Wall clock time and date at job start Tue Mar 31 2020 19:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08993 * 109.52781 * 54.91620 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.33640 * 122.74685 * 124.73444 * 10 9 7 12 12 S 1.76198 * 107.92471 * 179.97438 * 11 10 9 13 13 C 1.70985 * 90.28153 * 0.27416 * 12 11 10 14 14 C 1.50701 * 124.91648 * 179.84156 * 13 12 11 15 15 N 1.29031 * 110.16304 * 359.84254 * 13 12 11 16 16 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 17 17 C 1.53197 * 108.77484 * 306.64082 * 16 6 5 18 18 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 19 19 H 1.09007 * 109.45956 * 301.33304 * 18 3 2 20 20 N 1.46500 * 109.46359 * 61.28827 * 18 3 2 21 21 C 1.36941 * 119.99941 * 205.06683 * 20 18 3 22 22 H 1.07998 * 120.00247 * 0.02562 * 21 20 18 23 23 C 1.38815 * 119.99603 * 180.02562 * 21 20 18 24 24 N 1.31619 * 120.00024 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99832 * 179.97438 * 23 21 20 26 26 H 1.48508 * 109.47001 * 90.00309 * 25 23 21 27 27 H 1.48497 * 109.47422 * 210.00206 * 25 23 21 28 28 H 1.48498 * 109.47251 * 330.00660 * 25 23 21 29 29 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 31 31 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 32 32 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 33 33 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 34 34 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 35 35 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 36 36 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 37 37 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 38 38 H 1.08001 * 126.04068 * 0.03688 * 11 10 9 39 39 H 1.09001 * 109.46971 * 269.99692 * 14 13 12 40 40 H 1.08998 * 109.46958 * 29.99910 * 14 13 12 41 41 H 1.09006 * 109.46872 * 149.99831 * 14 13 12 42 42 H 1.09001 * 109.59151 * 66.42410 * 16 6 5 43 43 H 1.09003 * 109.59195 * 186.85244 * 16 6 5 44 44 H 1.09000 * 109.49544 * 174.58699 * 17 16 6 45 45 H 1.09001 * 109.49335 * 294.68070 * 17 16 6 46 46 H 0.97002 * 119.99966 * 25.07126 * 20 18 3 47 47 H 0.97003 * 119.99993 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 0.8406 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 6 0.8689 8.0090 -1.0519 12 16 -0.4530 8.9675 -1.7141 13 6 -0.6175 7.8621 -3.0081 14 6 -1.6292 7.9788 -4.1189 15 7 0.2501 6.9136 -2.8959 16 6 3.6953 3.5886 -1.1500 17 6 4.0737 2.8880 0.1587 18 6 3.5652 1.4450 0.1257 19 1 3.8546 0.9368 1.0456 20 7 4.1507 0.7473 -1.0218 21 6 5.3880 0.1704 -0.9139 22 1 5.9320 0.2294 0.0172 23 6 5.9429 -0.4902 -2.0014 24 7 5.2801 -0.5616 -3.1363 25 14 7.6309 -1.2766 -1.8545 26 1 7.4845 -2.6803 -1.3925 27 1 8.3022 -1.2589 -3.1790 28 1 8.4479 -0.5158 -0.8752 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5524 2.2172 -1.3494 35 1 1.9923 1.5357 -2.1491 36 1 2.8648 5.9544 -2.4033 37 1 2.6074 6.1231 -0.6501 38 1 1.4242 8.2287 -0.1520 39 1 -2.5437 7.4589 -3.8335 40 1 -1.8505 9.0306 -4.2998 41 1 -1.2250 7.5311 -5.0270 42 1 4.2211 3.1187 -1.9812 43 1 3.9672 4.6426 -1.0921 44 1 5.1579 2.8893 0.2718 45 1 3.6194 3.4148 0.9979 46 1 3.6620 0.6941 -1.8580 47 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037975328.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:24 Heat of formation + Delta-G solvation = -6.177578 kcal Electronic energy + Delta-G solvation = -27607.458164 eV Core-core repulsion = 23916.177943 eV Total energy + Delta-G solvation = -3691.280221 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58730 -40.60313 -39.00591 -35.84069 -35.38243 -34.01758 -33.37284 -31.12118 -30.93605 -29.69795 -28.72325 -26.34598 -25.38765 -25.01638 -23.81326 -22.13997 -21.14580 -20.51307 -19.71371 -19.23507 -18.45726 -18.10284 -17.03443 -16.61821 -16.35283 -16.05184 -15.96302 -15.64036 -15.51429 -15.00405 -14.79849 -14.74583 -14.47629 -14.33311 -14.07293 -13.98049 -13.60937 -13.52188 -13.11685 -13.02587 -12.97980 -12.85063 -12.81359 -12.62823 -12.36014 -12.32761 -12.09898 -12.06309 -11.81992 -11.57471 -11.44064 -11.10026 -10.89705 -10.72317 -10.49267 -10.28356 -9.60923 -9.52776 -8.89898 -7.86806 -5.12958 -0.20245 0.48921 0.78123 1.50152 1.50838 1.58601 1.68617 1.74239 2.20291 2.61110 3.15839 3.47054 3.60566 3.82021 3.88317 3.95385 4.05796 4.11500 4.15697 4.30169 4.37037 4.39755 4.44685 4.47408 4.48895 4.52638 4.62092 4.65254 4.71581 4.80137 4.87451 4.90073 4.99680 5.03197 5.06732 5.17545 5.23084 5.23984 5.29871 5.34956 5.41016 5.52451 5.62608 5.70683 6.34754 6.51888 6.91721 7.23576 7.42118 8.19232 8.42252 9.36592 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.002747 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.867113 B =10190.225952 C =10838.229752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.090 4.090 4 H 0.084 0.916 5 C 0.128 3.872 6 N -0.604 5.604 7 C 0.514 3.486 8 O -0.574 6.574 9 C -0.062 4.062 10 C 0.062 3.938 11 C -0.256 4.256 12 S 0.151 5.849 13 C 0.028 3.972 14 C -0.077 4.077 15 N -0.494 5.494 16 C 0.117 3.883 17 C -0.142 4.142 18 C 0.171 3.829 19 H 0.047 0.953 20 N -0.725 5.725 21 C -0.223 4.223 22 H 0.077 0.923 23 C -0.075 4.075 24 N -0.970 5.970 25 Si 0.963 3.037 26 H -0.294 1.294 27 H -0.303 1.303 28 H -0.268 1.268 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.041 0.959 36 H 0.118 0.882 37 H 0.145 0.855 38 H 0.207 0.793 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.110 0.890 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.372 0.628 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 20.481 6.731 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.110 4.110 4 H 0.103 0.897 5 C 0.005 3.995 6 N -0.336 5.336 7 C 0.303 3.697 8 O -0.454 6.454 9 C -0.103 4.103 10 C -0.070 4.070 11 C -0.395 4.395 12 S 0.406 5.594 13 C -0.250 4.250 14 C -0.137 4.137 15 N -0.210 5.210 16 C -0.005 4.005 17 C -0.182 4.182 18 C 0.063 3.937 19 H 0.065 0.935 20 N -0.366 5.366 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.267 4.267 24 N -0.622 5.622 25 Si 0.794 3.206 26 H -0.222 1.222 27 H -0.230 1.230 28 H -0.193 1.193 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.224 0.776 39 H 0.108 0.892 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.129 0.871 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.684 20.899 6.610 24.839 hybrid contribution 1.620 -1.864 -0.633 2.549 sum -10.064 19.035 5.977 22.346 Atomic orbital electron populations 1.21777 0.94939 1.01860 1.01703 1.21342 0.95920 0.95408 1.01704 1.21564 0.96060 0.96240 0.97147 0.89750 1.21322 0.98234 0.82405 0.97520 1.48154 1.08941 1.06094 1.70391 1.20872 0.86599 0.86682 0.75530 1.90659 1.16679 1.87034 1.51005 1.20353 0.95841 0.87379 1.06771 1.19808 0.98311 0.96956 0.91921 1.27138 1.04954 1.00133 1.07297 1.83563 1.29515 1.27077 1.19237 1.27556 1.00715 0.94191 1.02507 1.20564 0.94856 1.04832 0.93481 1.66009 1.06232 1.24873 1.23846 1.21729 0.78328 1.02040 0.98376 1.22397 1.01544 0.97474 0.96798 1.20464 0.90814 0.91819 0.90631 0.93460 1.42613 1.18350 1.64269 1.11404 1.19574 0.94287 1.24959 0.96676 0.90537 1.25396 1.01857 1.03362 0.96117 1.69816 1.39672 1.49877 1.02836 0.85279 0.80841 0.78332 0.76144 1.22214 1.23014 1.19283 0.92148 0.91799 0.93580 0.93910 0.91783 0.90383 0.94039 0.86458 0.83761 0.77646 0.89217 0.87439 0.90021 0.93261 0.87148 0.91221 0.90201 0.79460 0.94491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.67 71.98 0.70 -3.30 16 2 C -0.11 -3.45 5.19 30.59 0.16 -3.29 16 3 C -0.09 -2.91 2.12 -10.86 -0.02 -2.94 16 4 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.13 4.54 5.01 86.22 0.43 4.97 16 6 N -0.60 -19.33 2.98 -819.72 -2.44 -21.77 16 7 C 0.51 16.53 7.66 87.66 0.67 17.20 16 8 O -0.57 -23.01 14.86 -3.02 -0.04 -23.05 16 9 C -0.06 -1.42 4.54 29.10 0.13 -1.29 16 10 C 0.06 1.58 5.64 41.52 0.23 1.81 16 11 C -0.26 -4.81 11.07 66.78 0.74 -4.07 16 12 S 0.15 2.55 23.18 -56.49 -1.31 1.24 16 13 C 0.03 0.65 7.39 88.52 0.65 1.30 16 14 C -0.08 -1.22 10.46 71.24 0.75 -0.48 16 15 N -0.49 -14.68 9.68 -179.40 -1.74 -16.41 16 16 C 0.12 3.45 6.09 86.36 0.53 3.97 16 17 C -0.14 -4.18 5.78 30.67 0.18 -4.01 16 18 C 0.17 6.14 2.53 45.02 0.11 6.26 16 19 H 0.05 1.73 8.08 -2.38 -0.02 1.71 16 20 N -0.73 -33.59 3.72 -322.81 -1.20 -34.79 16 21 C -0.22 -11.56 9.93 84.03 0.83 -10.72 16 22 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 23 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 24 N -0.97 -58.32 13.06 21.65 0.28 -58.04 16 25 Si 0.96 45.21 29.55 68.60 2.03 47.24 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.05 1.33 6.70 -2.39 -0.02 1.31 16 32 H 0.04 1.68 7.70 -2.39 -0.02 1.67 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.86 5.72 -2.39 -0.01 2.85 16 35 H 0.04 1.72 6.64 -2.39 -0.02 1.71 16 36 H 0.12 2.50 7.94 -2.39 -0.02 2.49 16 37 H 0.14 2.16 7.58 -2.39 -0.02 2.15 16 38 H 0.21 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.05 1.83 7.74 -2.39 -0.02 1.81 16 43 H 0.11 2.31 5.93 -2.39 -0.01 2.29 16 44 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.37 19.16 5.95 -92.71 -0.55 18.61 16 47 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -72.78 384.39 2.56 -70.22 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.42 Total: 33.66 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: 6.56 Total: 1.71 kcal Atomic # 7 Polarization: -125.92 SS G_CDS: -5.10 Total: -131.01 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.04 Total: -23.05 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 2.55 SS G_CDS: -1.31 Total: 1.24 kcal Total: -72.78 2.56 -70.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037975328.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.039 kcal (2) G-P(sol) polarization free energy of solvation -72.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds