Wall clock time and date at job start Tue Mar 31 2020 19:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09006 * 109.49117 * 55.06512 * 3 2 1 5 5 C 1.53195 * 109.49782 * 295.00494 * 3 2 1 6 6 N 1.46922 * 108.77515 * 185.41041 * 5 3 2 7 7 C 1.34768 * 120.63318 * 233.58358 * 6 5 3 8 8 O 1.21621 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.47345 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.39237 * 123.08790 * 270.00624 * 9 7 6 11 11 C 1.50703 * 121.53097 * 359.96928 * 10 9 7 12 12 N 1.29510 * 116.93747 * 180.24723 * 10 9 7 13 13 S 1.69482 * 107.84364 * 359.63249 * 12 10 9 14 14 C 1.37898 * 123.08373 * 89.99374 * 9 7 6 15 15 C 1.50697 * 127.31930 * 0.02562 * 14 9 7 16 16 C 1.46929 * 118.73712 * 53.85875 * 6 5 3 17 17 C 1.53624 * 108.54227 * 306.09470 * 16 6 5 18 18 C 1.53035 * 109.49744 * 175.16299 * 3 2 1 19 19 H 1.08999 * 109.46099 * 61.31120 * 18 3 2 20 20 N 1.46500 * 109.46297 * 301.33934 * 18 3 2 21 21 C 1.36935 * 120.00269 * 154.99860 * 20 18 3 22 22 H 1.07996 * 119.99785 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99955 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00232 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46902 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46914 * 119.99810 * 25 23 21 28 28 H 1.48494 * 109.46972 * 239.99765 * 25 23 21 29 29 H 1.08997 * 109.47146 * 59.99877 * 1 2 3 30 30 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46762 * 299.99479 * 1 2 3 32 32 H 1.08997 * 109.46405 * 240.00001 * 2 1 3 33 33 H 1.08997 * 109.47146 * 120.00122 * 2 1 3 34 34 H 1.08999 * 109.58614 * 65.62065 * 5 3 2 35 35 H 1.09003 * 109.69866 * 305.27009 * 5 3 2 36 36 H 1.09002 * 109.47152 * 90.00304 * 11 10 9 37 37 H 1.09001 * 109.46980 * 330.00404 * 11 10 9 38 38 H 1.09004 * 109.47113 * 210.00385 * 11 10 9 39 39 H 1.08994 * 109.47849 * 89.99452 * 15 14 9 40 40 H 1.09007 * 109.46853 * 209.99346 * 15 14 9 41 41 H 1.08999 * 109.47279 * 329.98906 * 15 14 9 42 42 H 1.08999 * 109.58612 * 65.92610 * 16 6 5 43 43 H 1.08998 * 109.58590 * 186.35215 * 16 6 5 44 44 H 1.09001 * 109.63640 * 294.86373 * 17 16 6 45 45 H 1.09005 * 109.45531 * 174.74049 * 17 16 6 46 46 H 0.97005 * 119.99447 * 334.99634 * 20 18 3 47 47 H 0.96999 * 120.00304 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4816 4.5579 -1.5636 8 8 0.2818 4.4419 -1.7253 9 6 2.1042 5.8928 -1.6010 10 6 2.2590 6.6912 -0.4708 11 6 1.7914 6.2343 0.8870 12 7 2.8184 7.8468 -0.6410 13 16 3.2048 7.9998 -2.2840 14 6 2.5872 6.4660 -2.7584 15 6 2.5758 5.8747 -4.1445 16 6 3.6929 3.5894 -1.1578 17 6 4.0740 2.8879 0.1548 18 6 3.5656 1.4449 0.1216 19 1 3.9989 0.9269 -0.7340 20 7 3.9579 0.7607 1.3562 21 6 5.1962 0.1848 1.4561 22 1 5.8839 0.2354 0.6249 23 6 5.5677 -0.4639 2.6257 24 7 4.7298 -0.5251 3.6389 25 14 7.2573 -1.2489 2.7622 26 1 8.0032 -1.0415 1.4950 27 1 8.0036 -0.6251 3.8843 28 1 7.1078 -2.7044 3.0156 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5496 2.2173 -1.3538 35 1 1.9887 1.5406 -2.1560 36 1 2.5982 5.6997 1.3883 37 1 0.9333 5.5721 0.7719 38 1 1.5043 7.1007 1.4830 39 1 1.6535 6.1564 -4.6523 40 1 3.4300 6.2514 -4.7072 41 1 2.6360 4.7884 -4.0766 42 1 4.2130 3.1179 -1.9916 43 1 3.9658 4.6432 -1.1031 44 1 3.6219 3.4137 0.9958 45 1 5.1585 2.8891 0.2655 46 1 3.3403 0.7156 2.1029 47 1 4.9892 -0.9788 4.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:44 Heat of formation + Delta-G solvation = 1.234954 kcal Electronic energy + Delta-G solvation = -28239.530643 eV Core-core repulsion = 24548.571853 eV Total energy + Delta-G solvation = -3690.958790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74228 -38.85474 -37.55682 -34.76917 -33.85451 -33.46761 -31.75373 -30.00486 -29.53284 -29.01995 -28.05928 -25.28780 -23.94365 -23.26399 -22.38543 -21.05986 -20.76954 -19.65340 -18.66237 -18.14587 -17.14324 -16.95787 -16.14336 -15.05435 -14.98694 -14.89109 -14.62220 -14.05693 -13.95881 -13.74903 -13.65502 -13.60137 -13.34041 -13.22798 -12.99978 -12.88085 -12.62849 -12.40168 -12.33566 -12.15879 -11.89137 -11.65534 -11.39519 -11.31532 -10.98138 -10.89948 -10.88944 -10.74990 -10.40796 -10.23289 -10.17002 -9.93994 -9.76999 -9.64660 -9.54413 -8.95775 -8.80801 -8.56910 -7.00387 -5.81417 -3.10211 0.33547 1.12674 1.53554 1.97151 2.48903 3.07733 3.39396 3.45273 3.47524 4.10261 4.45629 4.54078 4.64668 4.94015 4.98523 5.10954 5.11766 5.16981 5.18739 5.29195 5.32428 5.41077 5.44475 5.46198 5.52371 5.56627 5.60753 5.63345 5.64644 5.83830 5.91264 5.98024 6.07759 6.11453 6.27355 6.30797 6.34955 6.39933 6.41860 6.51227 6.62883 6.78314 6.91461 7.00548 7.37854 7.65656 8.08084 8.36665 9.48520 10.05355 10.40188 11.40954 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003447 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.122894 B = 8121.871471 C = 9132.768584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.071 0.929 5 C 0.118 3.882 6 N -0.594 5.594 7 C 0.590 3.410 8 O -0.536 6.536 9 C -0.205 4.205 10 C 0.157 3.843 11 C -0.093 4.093 12 N -0.464 5.464 13 S 0.270 5.730 14 C -0.139 4.139 15 C -0.084 4.084 16 C 0.109 3.891 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.903 3.097 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.384 0.616 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.658 12.705 -14.315 19.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.374 3.626 8 O -0.413 6.413 9 C -0.225 4.225 10 C -0.021 4.021 11 C -0.154 4.154 12 N -0.285 5.285 13 S 0.426 5.574 14 C -0.270 4.270 15 C -0.143 4.143 16 C -0.014 4.014 17 C -0.191 4.191 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.094 0.906 46 H 0.218 0.782 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.167 14.608 -14.369 21.132 hybrid contribution 0.167 -2.010 0.595 2.102 sum -5.001 12.599 -13.774 19.325 Atomic orbital electron populations 1.21849 0.96779 1.01082 1.01313 1.21451 0.94383 0.95612 1.03529 1.21782 0.97666 0.96313 0.96616 0.91072 1.21822 0.99499 0.80973 0.98082 1.48138 1.08587 1.06451 1.69362 1.17369 0.85930 0.82827 0.76449 1.90795 1.14158 1.86140 1.50244 1.20160 1.10110 0.99567 0.92696 1.21300 0.94400 0.89079 0.97271 1.20701 1.02470 1.02462 0.89791 1.76414 1.22596 1.20510 1.08992 1.83952 1.56173 1.14462 1.02836 1.26023 1.00311 1.00803 0.99826 1.20385 1.03699 1.01610 0.88559 1.21936 0.79087 1.00988 0.99407 1.22769 1.02255 0.99244 0.94852 1.20178 0.90726 0.90447 0.91300 0.93416 1.42408 1.16503 1.64378 1.12700 1.19243 0.91783 1.27302 0.98633 0.91217 1.24713 0.98075 1.01494 0.96424 1.69664 1.35202 1.48288 1.04735 0.86179 0.84083 0.78921 0.77356 1.20612 1.21933 1.21912 0.93222 0.93154 0.92955 0.92441 0.89729 0.88971 0.91425 0.88975 0.89843 0.89718 0.89274 0.89893 0.89899 0.91324 0.90994 0.92084 0.90572 0.78171 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.67 37.16 0.36 -1.65 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.10 -1.59 1.93 -90.50 -0.17 -1.76 16 4 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 5 C 0.12 1.60 5.32 -3.71 -0.02 1.58 16 6 N -0.59 -7.91 2.97 -173.80 -0.52 -8.43 16 7 C 0.59 8.41 5.65 -12.56 -0.07 8.34 16 8 O -0.54 -9.18 16.52 5.26 0.09 -9.09 16 9 C -0.20 -2.62 3.60 -105.95 -0.38 -3.00 16 10 C 0.16 2.04 6.63 -83.20 -0.55 1.49 16 11 C -0.09 -1.09 9.96 36.01 0.36 -0.73 16 12 N -0.46 -6.08 11.97 32.50 0.39 -5.69 16 13 S 0.27 2.78 23.69 -107.50 -2.55 0.24 16 14 C -0.14 -1.48 6.67 -34.43 -0.23 -1.71 16 15 C -0.08 -0.65 10.19 36.00 0.37 -0.28 16 16 C 0.11 1.39 6.37 -3.48 -0.02 1.37 16 17 C -0.15 -2.38 5.67 -26.39 -0.15 -2.53 16 18 C 0.18 3.26 2.19 -67.89 -0.15 3.12 16 19 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 20 N -0.72 -16.49 4.33 -53.39 -0.23 -16.72 16 21 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.00 13.06 55.49 0.72 -26.27 16 25 Si 0.90 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.57 7.22 -51.93 -0.37 1.19 16 34 H 0.09 1.30 5.72 -51.93 -0.30 1.00 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.02 7.39 -51.93 -0.38 0.64 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.69 7.85 -51.93 -0.41 0.28 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.88 6.24 -51.93 -0.32 0.55 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.38 9.55 7.51 -40.82 -0.31 9.25 16 47 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 388.55 15.07 5.86 5.86 Total: -1.00 -30.44 388.55 -9.79 -40.24 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.48 Total: 7.61 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.05 Total: -4.35 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.37 Total: -57.10 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.55 Total: 0.24 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.44 -9.79 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.471 kcal (2) G-P(sol) polarization free energy of solvation -30.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds