Wall clock time and date at job start Tue Mar 31 2020 19:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47224 * 2 1 4 4 H 1.09006 * 109.49117 * 55.06512 * 3 2 1 5 5 C 1.53195 * 109.49782 * 295.00494 * 3 2 1 6 6 N 1.46922 * 108.77515 * 185.41041 * 5 3 2 7 7 C 1.34768 * 120.63318 * 233.58358 * 6 5 3 8 8 O 1.21621 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.47345 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.39237 * 123.08790 * 270.00624 * 9 7 6 11 11 C 1.50703 * 121.53097 * 359.96928 * 10 9 7 12 12 N 1.29510 * 116.93747 * 180.24723 * 10 9 7 13 13 S 1.69482 * 107.84364 * 359.63249 * 12 10 9 14 14 C 1.37898 * 123.08373 * 89.99374 * 9 7 6 15 15 C 1.50697 * 127.31930 * 0.02562 * 14 9 7 16 16 C 1.46929 * 118.73712 * 53.85875 * 6 5 3 17 17 C 1.53624 * 108.54227 * 306.09470 * 16 6 5 18 18 C 1.53035 * 109.49744 * 175.16299 * 3 2 1 19 19 H 1.08999 * 109.46099 * 61.31120 * 18 3 2 20 20 N 1.46500 * 109.46297 * 301.33934 * 18 3 2 21 21 C 1.36935 * 120.00269 * 154.99860 * 20 18 3 22 22 H 1.07996 * 119.99785 * 0.02562 * 21 20 18 23 23 C 1.38809 * 119.99955 * 180.02562 * 21 20 18 24 24 N 1.31622 * 120.00232 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99937 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46902 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.46914 * 119.99810 * 25 23 21 28 28 H 1.48494 * 109.46972 * 239.99765 * 25 23 21 29 29 H 1.08997 * 109.47146 * 59.99877 * 1 2 3 30 30 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46762 * 299.99479 * 1 2 3 32 32 H 1.08997 * 109.46405 * 240.00001 * 2 1 3 33 33 H 1.08997 * 109.47146 * 120.00122 * 2 1 3 34 34 H 1.08999 * 109.58614 * 65.62065 * 5 3 2 35 35 H 1.09003 * 109.69866 * 305.27009 * 5 3 2 36 36 H 1.09002 * 109.47152 * 90.00304 * 11 10 9 37 37 H 1.09001 * 109.46980 * 330.00404 * 11 10 9 38 38 H 1.09004 * 109.47113 * 210.00385 * 11 10 9 39 39 H 1.08994 * 109.47849 * 89.99452 * 15 14 9 40 40 H 1.09007 * 109.46853 * 209.99346 * 15 14 9 41 41 H 1.08999 * 109.47279 * 329.98906 * 15 14 9 42 42 H 1.08999 * 109.58612 * 65.92610 * 16 6 5 43 43 H 1.08998 * 109.58590 * 186.35215 * 16 6 5 44 44 H 1.09001 * 109.63640 * 294.86373 * 17 16 6 45 45 H 1.09005 * 109.45531 * 174.74049 * 17 16 6 46 46 H 0.97005 * 119.99447 * 334.99634 * 20 18 3 47 47 H 0.96999 * 120.00304 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6065 1.9816 0.8424 5 6 1.6350 2.1280 -1.3087 6 7 2.2414 3.4657 -1.3493 7 6 1.4816 4.5579 -1.5636 8 8 0.2818 4.4419 -1.7253 9 6 2.1042 5.8928 -1.6010 10 6 2.2590 6.6912 -0.4708 11 6 1.7914 6.2343 0.8870 12 7 2.8184 7.8468 -0.6410 13 16 3.2048 7.9998 -2.2840 14 6 2.5872 6.4660 -2.7584 15 6 2.5758 5.8747 -4.1445 16 6 3.6929 3.5894 -1.1578 17 6 4.0740 2.8879 0.1548 18 6 3.5656 1.4449 0.1216 19 1 3.9989 0.9269 -0.7340 20 7 3.9579 0.7607 1.3562 21 6 5.1962 0.1848 1.4561 22 1 5.8839 0.2354 0.6249 23 6 5.5677 -0.4639 2.6257 24 7 4.7298 -0.5251 3.6389 25 14 7.2573 -1.2489 2.7622 26 1 8.0032 -1.0415 1.4950 27 1 8.0036 -0.6251 3.8843 28 1 7.1078 -2.7044 3.0156 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.5496 2.2173 -1.3538 35 1 1.9887 1.5406 -2.1560 36 1 2.5982 5.6997 1.3883 37 1 0.9333 5.5721 0.7719 38 1 1.5043 7.1007 1.4830 39 1 1.6535 6.1564 -4.6523 40 1 3.4300 6.2514 -4.7072 41 1 2.6360 4.7884 -4.0766 42 1 4.2130 3.1179 -1.9916 43 1 3.9658 4.6432 -1.1031 44 1 3.6219 3.4137 0.9958 45 1 5.1585 2.8891 0.2655 46 1 3.3403 0.7156 2.1029 47 1 4.9892 -0.9788 4.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037978265.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:43 Heat of formation + Delta-G solvation = -16.209565 kcal Electronic energy + Delta-G solvation = -28240.287094 eV Core-core repulsion = 24548.571853 eV Total energy + Delta-G solvation = -3691.715241 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.81292 -39.95370 -38.77843 -36.18932 -35.31207 -34.30166 -33.43429 -31.07728 -30.97154 -30.11989 -29.02383 -26.73593 -25.26504 -24.67817 -23.45795 -22.28022 -21.91418 -20.96701 -19.65834 -19.20920 -18.91708 -18.06161 -17.22761 -16.75051 -16.02530 -15.95321 -15.76758 -15.48553 -15.42285 -14.95008 -14.73268 -14.61826 -14.46542 -14.34785 -14.26234 -13.82787 -13.59130 -13.54498 -13.29530 -13.19756 -13.14346 -13.05487 -12.86309 -12.66206 -12.51851 -12.24309 -12.12219 -12.04061 -11.83079 -11.79197 -11.56134 -11.49089 -11.08490 -11.04262 -10.83147 -10.41814 -9.74184 -9.67778 -8.93557 -7.89120 -5.16064 -0.52962 0.28831 0.64796 1.01762 1.39876 1.49192 1.50194 1.58945 2.00102 2.59364 3.29243 3.42556 3.45949 3.78588 3.79752 3.86911 4.00548 4.05709 4.16304 4.21866 4.24924 4.33798 4.41095 4.45507 4.48019 4.51453 4.57396 4.66711 4.72776 4.73778 4.82028 4.82659 4.89839 4.98757 5.02610 5.04549 5.07767 5.17993 5.31726 5.38551 5.48028 5.49241 5.54174 5.60546 5.67035 6.27214 6.32706 6.98185 7.39569 8.15974 8.38637 9.34499 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013368 B = 0.003447 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.122894 B = 8121.871471 C = 9132.768584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.092 4.092 4 H 0.054 0.946 5 C 0.125 3.875 6 N -0.591 5.591 7 C 0.598 3.402 8 O -0.568 6.568 9 C -0.234 4.234 10 C 0.150 3.850 11 C -0.091 4.091 12 N -0.498 5.498 13 S 0.315 5.685 14 C -0.126 4.126 15 C -0.087 4.087 16 C 0.121 3.879 17 C -0.141 4.141 18 C 0.181 3.819 19 H 0.050 0.950 20 N -0.730 5.730 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.074 4.074 24 N -0.970 5.970 25 Si 0.963 3.037 26 H -0.264 1.264 27 H -0.299 1.299 28 H -0.298 1.298 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.371 0.629 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.017 13.704 -17.303 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.073 0.927 5 C 0.003 3.997 6 N -0.322 5.322 7 C 0.383 3.617 8 O -0.447 6.447 9 C -0.254 4.254 10 C -0.027 4.027 11 C -0.152 4.152 12 N -0.319 5.319 13 S 0.471 5.529 14 C -0.257 4.257 15 C -0.146 4.146 16 C -0.002 4.002 17 C -0.182 4.182 18 C 0.072 3.928 19 H 0.068 0.932 20 N -0.369 5.369 21 C -0.359 4.359 22 H 0.095 0.905 23 C -0.266 4.266 24 N -0.621 5.621 25 Si 0.793 3.207 26 H -0.189 1.189 27 H -0.227 1.227 28 H -0.226 1.226 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.099 0.901 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.203 0.797 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.512 15.629 -17.407 23.825 hybrid contribution -0.044 -2.227 1.411 2.637 sum -4.556 13.402 -15.996 21.360 Atomic orbital electron populations 1.21786 0.94921 1.01873 1.01765 1.21352 0.95998 0.95107 1.02025 1.21626 0.95701 0.96530 0.97361 0.92750 1.21749 0.99533 0.81138 0.97285 1.48134 1.08754 1.06316 1.68958 1.17493 0.85395 0.83314 0.75482 1.90774 1.15538 1.86658 1.51751 1.20070 1.12454 0.99259 0.93647 1.21341 0.94595 0.89215 0.97562 1.20663 1.01938 1.02596 0.90012 1.76274 1.23499 1.20752 1.11394 1.83779 1.54799 1.13457 1.00818 1.26483 0.98115 1.00645 1.00450 1.20591 1.05464 1.01461 0.87073 1.21862 0.78807 1.01446 0.98084 1.22555 1.01221 0.97929 0.96464 1.20400 0.92416 0.90925 0.89055 0.93197 1.42583 1.15465 1.64845 1.13975 1.19613 0.92584 1.25432 0.98259 0.90451 1.25421 1.01296 1.03279 0.96622 1.69817 1.36973 1.50132 1.05171 0.85216 0.80557 0.77385 0.77501 1.18871 1.22693 1.22594 0.91587 0.92236 0.93637 0.91540 0.93510 0.89099 0.89343 0.89220 0.90841 0.88848 0.88209 0.87105 0.90051 0.89035 0.89919 0.93440 0.91720 0.79724 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.67 71.98 0.70 -3.02 16 2 C -0.11 -3.24 5.31 30.60 0.16 -3.08 16 3 C -0.09 -2.79 1.93 -10.72 -0.02 -2.81 16 4 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 5 C 0.13 3.15 5.32 86.36 0.46 3.61 16 6 N -0.59 -14.70 2.97 -822.03 -2.44 -17.13 16 7 C 0.60 16.18 5.65 86.64 0.49 16.67 16 8 O -0.57 -18.87 16.52 -4.10 -0.07 -18.94 16 9 C -0.23 -5.61 3.60 -20.72 -0.07 -5.69 16 10 C 0.15 3.76 6.63 43.14 0.29 4.04 16 11 C -0.09 -2.14 9.96 71.24 0.71 -1.43 16 12 N -0.50 -12.37 11.97 -51.10 -0.61 -12.99 16 13 S 0.32 5.70 23.69 -56.49 -1.34 4.36 16 14 C -0.13 -2.33 6.67 25.60 0.17 -2.16 16 15 C -0.09 -1.04 10.19 71.23 0.73 -0.31 16 16 C 0.12 2.82 6.37 86.51 0.55 3.37 16 17 C -0.14 -4.37 5.67 30.82 0.17 -4.19 16 18 C 0.18 6.33 2.19 45.02 0.10 6.43 16 19 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 20 N -0.73 -34.03 4.33 -322.83 -1.40 -35.42 16 21 C -0.23 -11.79 9.93 84.03 0.83 -10.96 16 22 H 0.08 3.84 7.83 -2.91 -0.02 3.82 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.97 -57.93 13.06 21.65 0.28 -57.65 16 25 Si 0.96 44.89 29.55 68.60 2.03 46.91 16 26 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 29 H 0.07 1.47 6.70 -2.39 -0.02 1.45 16 30 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 31 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.79 7.22 -2.39 -0.02 1.77 16 34 H 0.09 2.40 5.72 -2.39 -0.01 2.38 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.07 1.85 7.39 -2.39 -0.02 1.83 16 38 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.82 6.24 -2.39 -0.01 1.81 16 44 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 46 H 0.37 19.18 7.51 -92.70 -0.70 18.49 16 47 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -66.63 388.55 2.47 -64.16 By element: Atomic # 1 Polarization: 29.57 SS G_CDS: 0.28 Total: 29.85 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: 5.73 Total: -3.15 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -4.17 Total: -123.20 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.07 Total: -18.94 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Atomic # 16 Polarization: 5.70 SS G_CDS: -1.34 Total: 4.36 kcal Total: -66.63 2.47 -64.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978265.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.952 kcal (2) G-P(sol) polarization free energy of solvation -66.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds