Wall clock time and date at job start Tue Mar 31 2020 19:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 H 1.08996 * 109.52459 * 305.07986 * 3 2 1 5 5 C 1.53195 * 109.49806 * 65.15796 * 3 2 1 6 6 N 1.46927 * 108.77692 * 174.58327 * 5 3 2 7 7 C 1.34782 * 120.62608 * 126.41596 * 6 5 3 8 8 O 1.21603 * 120.00206 * 0.02562 * 7 6 5 9 9 C 1.47343 * 119.99379 * 180.02562 * 7 6 5 10 10 C 1.39231 * 123.09122 * 89.70844 * 9 7 6 11 11 C 1.50708 * 121.53080 * 0.02562 * 10 9 7 12 12 N 1.29518 * 116.93624 * 179.77774 * 10 9 7 13 13 S 1.69473 * 107.84481 * 0.45026 * 12 10 9 14 14 C 1.37900 * 123.08225 * 269.99118 * 9 7 6 15 15 C 1.50705 * 127.31968 * 359.96828 * 14 9 7 16 16 C 1.46930 * 118.74233 * 306.39812 * 6 5 3 17 17 C 1.53162 * 108.76587 * 53.60702 * 16 6 5 18 18 C 1.53042 * 109.49822 * 184.99714 * 3 2 1 19 19 H 1.08998 * 109.46108 * 58.67938 * 18 3 2 20 20 N 1.46492 * 109.46427 * 298.70418 * 18 3 2 21 21 C 1.36935 * 120.00376 * 154.97139 * 20 18 3 22 22 H 1.08003 * 119.99724 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99887 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.09008 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47367 * 299.99974 * 1 2 3 31 31 H 1.09005 * 109.47037 * 60.00552 * 1 2 3 32 32 H 1.09001 * 109.47367 * 240.00026 * 2 1 3 33 33 H 1.08996 * 109.47156 * 119.99698 * 2 1 3 34 34 H 1.09000 * 109.59049 * 294.37789 * 5 3 2 35 35 H 1.09001 * 109.58478 * 54.80401 * 5 3 2 36 36 H 1.09003 * 109.46704 * 89.99983 * 11 10 9 37 37 H 1.08994 * 109.46922 * 210.00296 * 11 10 9 38 38 H 1.08999 * 109.47100 * 330.00179 * 11 10 9 39 39 H 1.08997 * 109.47017 * 89.99521 * 15 14 9 40 40 H 1.08994 * 109.46855 * 209.99586 * 15 14 9 41 41 H 1.09004 * 109.46699 * 329.99379 * 15 14 9 42 42 H 1.08992 * 109.58462 * 173.39455 * 16 6 5 43 43 H 1.09001 * 109.58122 * 293.67470 * 16 6 5 44 44 H 1.09004 * 109.47861 * 185.41315 * 17 16 6 45 45 H 1.08993 * 109.50626 * 65.31983 * 17 16 6 46 46 H 0.97009 * 119.99477 * 334.97724 * 20 18 3 47 47 H 0.97006 * 119.99732 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4644 1.3507 7 6 1.4855 4.5564 1.5682 8 8 0.2865 4.4401 1.7338 9 6 2.1084 5.8912 1.6052 10 6 2.2656 6.6884 0.4745 11 6 1.8005 6.2301 -0.8837 12 7 2.8254 7.8439 0.6445 13 16 3.2112 7.9973 2.2876 14 6 2.5942 6.4633 2.7621 15 6 2.5859 5.8708 4.1477 16 6 3.6951 3.5889 1.1499 17 6 4.0733 2.8883 -0.1586 18 6 3.5652 1.4450 -0.1257 19 1 3.8546 0.9371 -1.0456 20 7 4.1507 0.7476 1.0218 21 6 5.3883 0.1714 0.9143 22 1 5.9329 0.2316 -0.0164 23 6 5.9428 -0.4899 2.0015 24 7 7.1326 -1.0433 1.8983 25 14 5.0011 -0.5933 3.6115 26 1 4.1578 -1.8157 3.6141 27 1 4.1362 0.6051 3.7569 28 1 5.9606 -0.6515 4.7434 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5531 2.2161 1.3585 35 1 1.9964 1.5378 2.1549 36 1 0.7685 6.5445 -1.0395 37 1 2.4347 6.6709 -1.6527 38 1 1.8618 5.1433 -0.9412 39 1 3.5030 5.3033 4.3057 40 1 2.5224 6.6712 4.8847 41 1 1.7262 5.2092 4.2548 42 1 3.9668 4.6428 1.0920 43 1 4.2207 3.1212 1.9825 44 1 5.1574 2.8898 -0.2715 45 1 3.6189 3.4149 -0.9978 46 1 3.6616 0.6939 1.8579 47 1 7.5199 -1.5057 2.6580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:50 Heat of formation + Delta-G solvation = 7.390852 kcal Electronic energy + Delta-G solvation = -28802.321229 eV Core-core repulsion = 25111.629379 eV Total energy + Delta-G solvation = -3690.691850 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.75885 -38.97983 -37.64895 -34.60558 -33.92568 -33.44303 -31.81747 -30.06039 -29.87069 -29.06666 -28.14611 -25.44082 -24.01320 -23.27083 -22.68205 -21.16405 -20.82141 -19.10502 -18.52984 -18.05490 -17.76235 -16.89026 -16.12473 -15.11522 -15.03219 -14.81559 -14.54981 -14.36555 -14.08938 -13.76667 -13.68309 -13.58077 -13.43070 -13.25487 -13.04289 -12.81422 -12.52676 -12.51703 -12.42567 -12.36462 -11.98011 -11.68427 -11.39095 -11.30656 -11.14036 -11.01207 -10.90694 -10.85073 -10.45009 -10.42784 -10.27187 -9.89192 -9.87480 -9.61034 -9.50643 -9.01711 -8.79118 -8.46962 -7.33979 -5.83926 -3.19418 0.37321 1.15990 1.55407 1.98602 2.53247 3.12935 3.27718 3.31476 3.38746 4.13970 4.50436 4.51087 4.68603 4.93719 4.97330 5.03568 5.08974 5.16044 5.21836 5.26812 5.30687 5.34942 5.36699 5.48028 5.49899 5.51763 5.57204 5.60679 5.69145 5.71690 5.83235 5.84894 5.96959 6.00866 6.12483 6.21648 6.27081 6.37182 6.40849 6.45242 6.50547 6.61093 6.70372 6.82246 7.44676 7.92274 8.12252 8.35054 9.13085 9.85606 10.05189 11.34468 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004378 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.587811 B = 6394.326743 C = 7310.625137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.073 0.927 5 C 0.116 3.884 6 N -0.592 5.592 7 C 0.589 3.411 8 O -0.539 6.539 9 C -0.206 4.206 10 C 0.155 3.845 11 C -0.090 4.090 12 N -0.467 5.467 13 S 0.273 5.727 14 C -0.135 4.135 15 C -0.087 4.087 16 C 0.116 3.884 17 C -0.149 4.149 18 C 0.185 3.815 19 H 0.062 0.938 20 N -0.743 5.743 21 C -0.241 4.241 22 H 0.091 0.909 23 C 0.008 3.992 24 N -0.932 5.932 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.279 1.279 28 H -0.291 1.291 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.053 0.947 46 H 0.360 0.640 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 13.965 -0.997 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.092 0.908 5 C -0.006 4.006 6 N -0.324 5.324 7 C 0.373 3.627 8 O -0.417 6.417 9 C -0.226 4.226 10 C -0.023 4.023 11 C -0.151 4.151 12 N -0.287 5.287 13 S 0.429 5.571 14 C -0.266 4.266 15 C -0.146 4.146 16 C -0.007 4.007 17 C -0.190 4.190 18 C 0.075 3.925 19 H 0.080 0.920 20 N -0.387 5.387 21 C -0.370 4.370 22 H 0.108 0.892 23 C -0.188 4.188 24 N -0.580 5.580 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.206 1.206 28 H -0.218 1.218 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.072 0.928 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.566 15.858 -1.024 19.083 hybrid contribution -1.119 -1.747 1.209 2.401 sum -11.684 14.111 0.185 18.321 Atomic orbital electron populations 1.21864 0.96571 1.01238 1.01500 1.21428 0.94510 0.95578 1.03379 1.21813 0.97474 0.96292 0.97067 0.90842 1.21757 0.99162 0.81359 0.98279 1.48141 1.08916 1.06204 1.69101 1.17366 0.85883 0.82837 0.76570 1.90778 1.14241 1.86196 1.50445 1.20144 1.10237 0.99552 0.92715 1.21248 0.94632 0.89238 0.97157 1.20659 1.02286 1.02224 0.89934 1.76374 1.22652 1.20434 1.09283 1.83952 1.56078 1.14375 1.02649 1.26048 0.99906 1.00665 0.99956 1.20427 1.04484 1.01359 0.88340 1.21708 0.78695 1.00229 1.00042 1.22505 1.02425 0.98760 0.95281 1.20197 0.89362 0.90619 0.92339 0.92026 1.42833 1.19779 1.65771 1.10286 1.19047 0.92143 1.26638 0.99218 0.89152 1.24629 0.96431 1.00288 0.97466 1.69691 1.16260 1.41147 1.30910 0.86682 0.79408 0.77802 0.85309 1.21024 1.20562 1.21790 0.93010 0.92858 0.93066 0.91398 0.91150 0.89054 0.91366 0.89493 0.89657 0.89919 0.88989 0.89902 0.89757 0.91353 0.90104 0.90140 0.92839 0.80629 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 37.16 0.36 -1.46 16 2 C -0.11 -1.55 5.19 -26.74 -0.14 -1.69 16 3 C -0.11 -1.51 2.14 -90.50 -0.19 -1.71 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.73 5.03 -3.71 -0.02 1.71 16 6 N -0.59 -8.66 2.97 -174.08 -0.52 -9.18 16 7 C 0.59 8.87 5.65 -12.55 -0.07 8.80 16 8 O -0.54 -9.54 16.52 5.27 0.09 -9.45 16 9 C -0.21 -2.78 3.61 -105.95 -0.38 -3.17 16 10 C 0.16 2.00 6.61 -83.19 -0.55 1.45 16 11 C -0.09 -0.95 9.96 36.01 0.36 -0.59 16 12 N -0.47 -6.11 11.97 32.50 0.39 -5.72 16 13 S 0.27 3.02 23.69 -107.50 -2.55 0.47 16 14 C -0.14 -1.61 6.67 -34.43 -0.23 -1.84 16 15 C -0.09 -0.86 10.19 36.01 0.37 -0.49 16 16 C 0.12 1.71 6.08 -3.72 -0.02 1.68 16 17 C -0.15 -2.25 5.78 -26.62 -0.15 -2.40 16 18 C 0.18 3.09 2.53 -67.89 -0.17 2.92 16 19 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 20 N -0.74 -15.39 3.53 -53.39 -0.19 -15.58 16 21 C -0.24 -6.17 10.41 -15.06 -0.16 -6.32 16 22 H 0.09 2.51 8.06 -52.48 -0.42 2.09 16 23 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 24 N -0.93 -27.96 13.97 55.49 0.78 -27.19 16 25 Si 0.88 20.93 27.73 -169.99 -4.71 16.22 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 34 H 0.09 1.35 5.73 -51.93 -0.30 1.05 16 35 H 0.07 1.10 6.64 -51.93 -0.34 0.75 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.08 0.90 7.39 -51.93 -0.38 0.51 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.92 7.85 -51.93 -0.41 0.51 16 42 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 43 H 0.08 1.37 7.74 -51.93 -0.40 0.96 16 44 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.36 7.50 3.81 -40.82 -0.16 7.35 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 381.78 15.07 5.75 5.75 Total: -1.00 -30.67 381.78 -9.36 -40.03 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.30 Total: 7.63 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -1.10 Total: -2.99 kcal Atomic # 7 Polarization: -58.12 SS G_CDS: 0.46 Total: -57.66 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.22 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.55 Total: 0.47 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.67 -9.36 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.420 kcal (2) G-P(sol) polarization free energy of solvation -30.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds