Wall clock time and date at job start Tue Mar 31 2020 19:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47042 * 2 1 4 4 H 1.08996 * 109.52459 * 305.07986 * 3 2 1 5 5 C 1.53195 * 109.49806 * 65.15796 * 3 2 1 6 6 N 1.46927 * 108.77692 * 174.58327 * 5 3 2 7 7 C 1.34782 * 120.62608 * 126.41596 * 6 5 3 8 8 O 1.21603 * 120.00206 * 0.02562 * 7 6 5 9 9 C 1.47343 * 119.99379 * 180.02562 * 7 6 5 10 10 C 1.39231 * 123.09122 * 89.70844 * 9 7 6 11 11 C 1.50708 * 121.53080 * 0.02562 * 10 9 7 12 12 N 1.29518 * 116.93624 * 179.77774 * 10 9 7 13 13 S 1.69473 * 107.84481 * 0.45026 * 12 10 9 14 14 C 1.37900 * 123.08225 * 269.99118 * 9 7 6 15 15 C 1.50705 * 127.31968 * 359.96828 * 14 9 7 16 16 C 1.46930 * 118.74233 * 306.39812 * 6 5 3 17 17 C 1.53162 * 108.76587 * 53.60702 * 16 6 5 18 18 C 1.53042 * 109.49822 * 184.99714 * 3 2 1 19 19 H 1.08998 * 109.46108 * 58.67938 * 18 3 2 20 20 N 1.46492 * 109.46427 * 298.70418 * 18 3 2 21 21 C 1.36935 * 120.00376 * 154.97139 * 20 18 3 22 22 H 1.08003 * 119.99724 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99887 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.09008 * 109.47364 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47367 * 299.99974 * 1 2 3 31 31 H 1.09005 * 109.47037 * 60.00552 * 1 2 3 32 32 H 1.09001 * 109.47367 * 240.00026 * 2 1 3 33 33 H 1.08996 * 109.47156 * 119.99698 * 2 1 3 34 34 H 1.09000 * 109.59049 * 294.37789 * 5 3 2 35 35 H 1.09001 * 109.58478 * 54.80401 * 5 3 2 36 36 H 1.09003 * 109.46704 * 89.99983 * 11 10 9 37 37 H 1.08994 * 109.46922 * 210.00296 * 11 10 9 38 38 H 1.08999 * 109.47100 * 330.00179 * 11 10 9 39 39 H 1.08997 * 109.47017 * 89.99521 * 15 14 9 40 40 H 1.08994 * 109.46855 * 209.99586 * 15 14 9 41 41 H 1.09004 * 109.46699 * 329.99379 * 15 14 9 42 42 H 1.08992 * 109.58462 * 173.39455 * 16 6 5 43 43 H 1.09001 * 109.58122 * 293.67470 * 16 6 5 44 44 H 1.09004 * 109.47861 * 185.41315 * 17 16 6 45 45 H 1.08993 * 109.50626 * 65.31983 * 17 16 6 46 46 H 0.97009 * 119.99477 * 334.97724 * 20 18 3 47 47 H 0.97006 * 119.99732 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6047 1.9827 -0.8407 5 6 1.6384 2.1268 1.3105 6 7 2.2450 3.4644 1.3507 7 6 1.4855 4.5564 1.5682 8 8 0.2865 4.4401 1.7338 9 6 2.1084 5.8912 1.6052 10 6 2.2656 6.6884 0.4745 11 6 1.8005 6.2301 -0.8837 12 7 2.8254 7.8439 0.6445 13 16 3.2112 7.9973 2.2876 14 6 2.5942 6.4633 2.7621 15 6 2.5859 5.8708 4.1477 16 6 3.6951 3.5889 1.1499 17 6 4.0733 2.8883 -0.1586 18 6 3.5652 1.4450 -0.1257 19 1 3.8546 0.9371 -1.0456 20 7 4.1507 0.7476 1.0218 21 6 5.3883 0.1714 0.9143 22 1 5.9329 0.2316 -0.0164 23 6 5.9428 -0.4899 2.0015 24 7 7.1326 -1.0433 1.8983 25 14 5.0011 -0.5933 3.6115 26 1 4.1578 -1.8157 3.6141 27 1 4.1362 0.6051 3.7569 28 1 5.9606 -0.6515 4.7434 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5531 2.2161 1.3585 35 1 1.9964 1.5378 2.1549 36 1 0.7685 6.5445 -1.0395 37 1 2.4347 6.6709 -1.6527 38 1 1.8618 5.1433 -0.9412 39 1 3.5030 5.3033 4.3057 40 1 2.5224 6.6712 4.8847 41 1 1.7262 5.2092 4.2548 42 1 3.9668 4.6428 1.0920 43 1 4.2207 3.1212 1.9825 44 1 5.1574 2.8898 -0.2715 45 1 3.6189 3.4149 -0.9978 46 1 3.6616 0.6939 1.8579 47 1 7.5199 -1.5057 2.6580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037978270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:49 Heat of formation + Delta-G solvation = -10.235101 kcal Electronic energy + Delta-G solvation = -28803.085548 eV Core-core repulsion = 25111.629379 eV Total energy + Delta-G solvation = -3691.456169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.89285 -40.10301 -38.86208 -35.98022 -35.39222 -34.33082 -33.56166 -31.49880 -30.95641 -30.14235 -29.12231 -26.70774 -25.25690 -24.99930 -23.70728 -22.29000 -21.92401 -20.34120 -19.87439 -19.53298 -18.99944 -18.04619 -17.26133 -16.65828 -16.23068 -16.01859 -15.84042 -15.62421 -15.33237 -14.99784 -14.87280 -14.70137 -14.45620 -14.37208 -14.23977 -14.14449 -13.76600 -13.59837 -13.31898 -13.25487 -13.16076 -13.01655 -12.93871 -12.64354 -12.47478 -12.30269 -12.16241 -12.03856 -11.85657 -11.82522 -11.59390 -11.50885 -11.16491 -11.05327 -10.88180 -10.44127 -9.74878 -9.68439 -9.22438 -7.96540 -5.27383 -0.55189 0.25673 0.64374 1.02414 1.36165 1.38652 1.39413 1.46116 1.96509 2.50537 3.27695 3.35404 3.41234 3.61767 3.75896 3.82514 3.93992 3.98825 4.13327 4.20524 4.25930 4.27761 4.37839 4.43946 4.45909 4.48357 4.54050 4.57767 4.66295 4.67979 4.79082 4.85028 4.93941 4.98047 5.01099 5.06142 5.14998 5.18459 5.24881 5.26187 5.39637 5.48473 5.49566 5.62128 5.86143 6.25272 6.28320 6.95060 7.14403 7.91009 8.09149 9.25393 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011945 B = 0.004378 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.587811 B = 6394.326743 C = 7310.625137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 C -0.094 4.094 4 H 0.094 0.906 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.598 3.402 8 O -0.566 6.566 9 C -0.232 4.232 10 C 0.151 3.849 11 C -0.090 4.090 12 N -0.492 5.492 13 S 0.313 5.687 14 C -0.135 4.135 15 C -0.089 4.089 16 C 0.125 3.875 17 C -0.142 4.142 18 C 0.178 3.822 19 H 0.053 0.947 20 N -0.741 5.741 21 C -0.210 4.210 22 H 0.061 0.939 23 C -0.059 4.059 24 N -0.985 5.985 25 Si 0.938 3.062 26 H -0.283 1.283 27 H -0.254 1.254 28 H -0.302 1.302 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.055 0.945 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.098 0.902 40 H 0.109 0.891 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.362 0.638 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.953 15.698 -0.809 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.148 4.148 3 C -0.114 4.114 4 H 0.112 0.888 5 C -0.004 4.004 6 N -0.320 5.320 7 C 0.384 3.616 8 O -0.446 6.446 9 C -0.252 4.252 10 C -0.026 4.026 11 C -0.151 4.151 12 N -0.313 5.313 13 S 0.469 5.531 14 C -0.265 4.265 15 C -0.148 4.148 16 C 0.003 3.997 17 C -0.182 4.182 18 C 0.070 3.930 19 H 0.071 0.929 20 N -0.385 5.385 21 C -0.342 4.342 22 H 0.079 0.921 23 C -0.250 4.250 24 N -0.636 5.636 25 Si 0.767 3.233 26 H -0.210 1.210 27 H -0.179 1.179 28 H -0.229 1.229 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.099 0.901 46 H 0.196 0.804 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.450 17.631 -0.865 21.601 hybrid contribution -0.541 -2.201 1.078 2.509 sum -12.990 15.430 0.213 20.171 Atomic orbital electron populations 1.21803 0.94552 1.02029 1.02132 1.21397 0.96267 0.94959 1.02163 1.21719 0.95183 0.96843 0.97655 0.88751 1.21718 0.99409 0.81343 0.97908 1.48112 1.08702 1.06207 1.68942 1.17484 0.85382 0.83258 0.75496 1.90760 1.15475 1.86680 1.51671 1.20121 1.12187 0.99204 0.93731 1.21446 0.94353 0.89032 0.97768 1.20726 1.02943 1.02089 0.89343 1.76296 1.23447 1.20739 1.10850 1.83808 1.54877 1.13058 1.01342 1.26418 0.98681 1.01024 1.00405 1.20547 1.04199 1.02129 0.87916 1.21556 0.78601 1.00765 0.98822 1.22378 1.01475 0.97667 0.96684 1.20417 0.91174 0.91021 0.90372 0.92918 1.42784 1.18212 1.65800 1.11674 1.18989 0.93084 1.24547 0.97538 0.92087 1.25286 0.97425 1.01296 1.01014 1.69863 1.18520 1.43520 1.31736 0.85669 0.78127 0.78624 0.80861 1.20954 1.17923 1.22910 0.92237 0.92818 0.91776 0.91687 0.93316 0.88549 0.92638 0.88785 0.88461 0.90117 0.88358 0.87257 0.90886 0.89959 0.92195 0.91835 0.90077 0.80370 0.93705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 9.67 71.98 0.70 -2.44 16 2 C -0.11 -2.89 5.19 30.59 0.16 -2.73 16 3 C -0.09 -2.49 2.14 -10.72 -0.02 -2.51 16 4 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 5 C 0.12 3.28 5.03 86.36 0.43 3.72 16 6 N -0.59 -16.11 2.97 -822.93 -2.45 -18.55 16 7 C 0.60 16.91 5.65 86.64 0.49 17.40 16 8 O -0.57 -19.11 16.52 -4.04 -0.07 -19.18 16 9 C -0.23 -5.81 3.61 -20.72 -0.07 -5.89 16 10 C 0.15 3.59 6.61 43.14 0.29 3.87 16 11 C -0.09 -1.71 9.96 71.24 0.71 -1.00 16 12 N -0.49 -11.87 11.97 -51.10 -0.61 -12.48 16 13 S 0.31 6.16 23.69 -56.49 -1.34 4.82 16 14 C -0.13 -2.90 6.67 25.61 0.17 -2.73 16 15 C -0.09 -1.54 10.19 71.24 0.73 -0.82 16 16 C 0.13 3.49 6.08 86.35 0.52 4.01 16 17 C -0.14 -4.06 5.78 30.66 0.18 -3.88 16 18 C 0.18 5.77 2.53 45.02 0.11 5.89 16 19 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 20 N -0.74 -30.32 3.53 -322.82 -1.14 -31.46 16 21 C -0.21 -10.93 10.41 84.03 0.87 -10.06 16 22 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 23 C -0.06 -3.29 5.50 84.86 0.47 -2.82 16 24 N -0.98 -60.89 13.97 21.65 0.30 -60.59 16 25 Si 0.94 43.57 27.73 68.60 1.90 45.48 16 26 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 27 H -0.25 -10.58 6.52 99.48 0.65 -9.93 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.05 1.14 6.70 -2.39 -0.02 1.12 16 31 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.05 1.50 7.70 -2.39 -0.02 1.48 16 34 H 0.10 2.64 5.73 -2.39 -0.01 2.62 16 35 H 0.06 1.69 6.64 -2.39 -0.02 1.68 16 36 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.10 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.55 7.39 -2.39 -0.02 1.53 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.46 7.85 -2.38 -0.02 1.44 16 42 H 0.08 2.10 6.23 -2.39 -0.01 2.08 16 43 H 0.06 1.95 7.74 -2.39 -0.02 1.93 16 44 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.36 14.70 3.81 -92.70 -0.35 14.34 16 47 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -66.80 381.78 2.90 -63.90 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.57 Total: 28.05 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: 5.73 Total: 0.01 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -3.89 Total: -123.08 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.90 Total: 45.48 kcal Atomic # 16 Polarization: 6.16 SS G_CDS: -1.34 Total: 4.82 kcal Total: -66.80 2.90 -63.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.662 kcal (2) G-P(sol) polarization free energy of solvation -66.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds