Wall clock time and date at job start Tue Mar 31 2020 19:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 H 1.08995 * 109.49652 * 304.93445 * 3 2 1 5 5 C 1.53189 * 109.49925 * 65.00128 * 3 2 1 6 6 N 1.46922 * 108.77899 * 174.58727 * 5 3 2 7 7 C 1.34768 * 120.63318 * 126.36800 * 6 5 3 8 8 O 1.21621 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.47345 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.39237 * 123.08790 * 270.00624 * 9 7 6 11 11 C 1.50703 * 121.53097 * 359.96928 * 10 9 7 12 12 N 1.29510 * 116.93747 * 180.24723 * 10 9 7 13 13 S 1.69482 * 107.84364 * 359.63249 * 12 10 9 14 14 C 1.37901 * 123.08351 * 89.99843 * 9 7 6 15 15 C 1.50695 * 127.31868 * 0.02562 * 14 9 7 16 16 C 1.46929 * 118.73712 * 306.64317 * 6 5 3 17 17 C 1.52767 * 109.00832 * 53.30903 * 16 6 5 18 18 C 1.53041 * 109.37950 * 305.58786 * 17 16 6 19 19 H 1.08997 * 109.46201 * 301.21677 * 18 17 16 20 20 N 1.46507 * 109.45556 * 181.25829 * 18 17 16 21 21 C 1.36938 * 119.99701 * 84.93380 * 20 18 17 22 22 H 1.08001 * 120.00124 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99687 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00096 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47036 * 89.99746 * 25 23 21 27 27 H 1.48498 * 109.47105 * 210.00187 * 25 23 21 28 28 H 1.48497 * 109.47211 * 330.00178 * 25 23 21 29 29 H 1.09002 * 109.46830 * 299.99962 * 1 2 3 30 30 H 1.09004 * 109.47393 * 59.99597 * 1 2 3 31 31 H 1.09006 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47166 * 240.00456 * 2 1 3 33 33 H 1.09004 * 109.47393 * 120.00403 * 2 1 3 34 34 H 1.09001 * 109.58616 * 54.79554 * 5 3 2 35 35 H 1.08995 * 109.70379 * 294.44618 * 5 3 2 36 36 H 1.09002 * 109.47152 * 90.00304 * 11 10 9 37 37 H 1.09001 * 109.46980 * 330.00404 * 11 10 9 38 38 H 1.09004 * 109.47113 * 210.00385 * 11 10 9 39 39 H 1.08994 * 109.47489 * 90.00251 * 15 14 9 40 40 H 1.09007 * 109.46960 * 209.99989 * 15 14 9 41 41 H 1.08999 * 109.47532 * 329.99770 * 15 14 9 42 42 H 1.08993 * 109.58892 * 173.14246 * 16 6 5 43 43 H 1.09000 * 109.58756 * 293.56878 * 16 6 5 44 44 H 1.08994 * 109.56345 * 185.55247 * 17 16 6 45 45 H 1.08994 * 109.36060 * 65.49653 * 17 16 6 46 46 H 0.96992 * 120.00091 * 264.93073 * 20 18 17 47 47 H 0.97005 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4815 4.5579 1.5628 8 8 0.2817 4.4419 1.7247 9 6 2.1043 5.8927 1.6014 10 6 2.5904 6.4712 2.7709 11 6 2.5092 5.7578 4.0959 12 7 3.1106 7.6529 2.6687 13 16 3.0258 8.1186 1.0413 14 6 2.2592 6.6837 0.4824 15 6 1.8447 6.3599 -0.9297 16 6 3.6913 3.5904 1.1466 17 6 4.0740 2.8880 -0.1549 18 6 3.5655 1.4449 -0.1217 19 1 3.9989 0.9267 0.7337 20 7 3.9577 0.7608 -1.3564 21 6 5.1961 0.1850 -1.4563 22 1 5.8838 0.2355 -0.6251 23 6 5.5675 -0.4637 -2.6260 24 7 4.7292 -0.5257 -3.6388 25 14 7.2571 -1.2486 -2.7627 26 1 7.1877 -2.6571 -2.2972 27 1 7.7049 -1.2164 -4.1782 28 1 8.2219 -0.4963 -1.9211 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9907 1.5397 2.1546 35 1 0.5498 2.2172 1.3564 36 1 3.4095 5.1611 4.2430 37 1 1.6358 5.1058 4.1045 38 1 2.4237 6.4905 4.8984 39 1 0.8250 6.7065 -1.0976 40 1 2.5171 6.8573 -1.6289 41 1 1.8922 5.2820 -1.0844 42 1 3.9623 4.6443 1.0847 43 1 4.2182 3.1238 1.9790 44 1 5.1584 2.8892 -0.2651 45 1 3.6219 3.4138 -0.9957 46 1 3.3402 0.7157 -2.1030 47 1 4.9887 -0.9794 -4.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037978273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:53 Heat of formation + Delta-G solvation = 0.996718 kcal Electronic energy + Delta-G solvation = -28227.840557 eV Core-core repulsion = 24536.871437 eV Total energy + Delta-G solvation = -3690.969121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.74275 -38.88144 -37.55678 -34.77490 -33.87834 -33.41531 -31.78452 -30.05819 -29.58439 -29.02517 -28.02113 -25.29033 -23.93127 -23.28337 -22.36955 -21.08704 -20.78309 -19.63183 -18.58945 -18.24514 -17.18147 -16.89795 -16.10952 -15.13928 -14.99971 -14.85918 -14.55941 -14.10030 -13.98409 -13.73994 -13.64668 -13.56193 -13.35259 -13.22562 -13.01742 -12.78370 -12.66554 -12.48570 -12.39625 -12.14662 -11.89147 -11.67092 -11.36085 -11.33223 -10.98261 -10.91224 -10.88772 -10.74865 -10.41109 -10.25013 -10.20002 -9.93711 -9.77302 -9.64927 -9.51944 -8.95719 -8.82020 -8.56851 -7.01451 -5.82249 -3.11041 0.35443 1.13968 1.53051 1.95152 2.50489 3.07424 3.39059 3.44741 3.46179 4.12508 4.46458 4.53664 4.68255 4.97138 4.98101 5.05080 5.16804 5.17868 5.24473 5.27092 5.29176 5.33367 5.41253 5.50778 5.53349 5.56508 5.63676 5.65163 5.72342 5.79883 5.83741 5.96880 6.07372 6.10722 6.27215 6.29695 6.34420 6.36667 6.41143 6.50478 6.61795 6.77501 6.90681 6.99433 7.38409 7.64457 8.08797 8.35869 9.47677 10.04389 10.39293 11.40075 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003475 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.503155 B = 8054.912462 C = 9079.741505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.118 3.882 6 N -0.594 5.594 7 C 0.591 3.409 8 O -0.536 6.536 9 C -0.209 4.209 10 C 0.153 3.847 11 C -0.090 4.090 12 N -0.468 5.468 13 S 0.275 5.725 14 C -0.131 4.131 15 C -0.088 4.088 16 C 0.109 3.891 17 C -0.150 4.150 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.719 5.719 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.124 13.067 10.890 18.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.088 0.912 5 C -0.004 4.004 6 N -0.325 5.325 7 C 0.375 3.625 8 O -0.414 6.414 9 C -0.230 4.230 10 C -0.025 4.025 11 C -0.151 4.151 12 N -0.289 5.289 13 S 0.431 5.569 14 C -0.261 4.261 15 C -0.146 4.146 16 C -0.014 4.014 17 C -0.192 4.192 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.360 5.360 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.579 5.579 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.218 0.782 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.602 14.954 11.142 19.472 hybrid contribution 0.178 -2.031 -0.506 2.100 sum -5.423 12.924 10.635 17.594 Atomic orbital electron populations 1.21846 0.96778 1.01090 1.01301 1.21450 0.94385 0.95596 1.03546 1.21779 0.97659 0.96334 0.96604 0.91202 1.21823 0.99496 0.81002 0.98090 1.48132 1.08632 1.06420 1.69338 1.17362 0.85907 0.82795 0.76446 1.90794 1.14161 1.86128 1.50280 1.20141 1.10646 0.99471 0.92716 1.21246 0.93709 0.90758 0.96749 1.20651 1.03888 0.99874 0.90730 1.76367 1.26010 1.15832 1.10706 1.83990 1.53166 1.18662 1.01100 1.26076 1.00518 0.99305 1.00219 1.20443 1.02469 1.04090 0.87646 1.21756 0.79192 1.01025 0.99428 1.22612 1.02295 0.99279 0.94981 1.20184 0.90718 0.90445 0.91322 0.93360 1.42398 1.16497 1.64397 1.12681 1.19203 0.91796 1.27415 0.98619 0.91261 1.24710 0.98087 1.01462 0.96412 1.69653 1.35289 1.48230 1.04766 0.86246 0.84080 0.79364 0.76816 1.21744 1.21839 1.20817 0.93200 0.93000 0.93140 0.89746 0.92398 0.91337 0.88967 0.89417 0.89908 0.89776 0.89202 0.89721 0.89503 0.90993 0.91310 0.90481 0.92266 0.78195 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.15 0.36 -1.65 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C -0.10 -1.58 1.93 -90.50 -0.17 -1.76 16 4 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.60 5.32 -3.71 -0.02 1.58 16 6 N -0.59 -7.92 2.98 -174.33 -0.52 -8.44 16 7 C 0.59 8.42 5.65 -12.56 -0.07 8.35 16 8 O -0.54 -9.19 16.52 5.26 0.09 -9.10 16 9 C -0.21 -2.68 3.62 -105.94 -0.38 -3.07 16 10 C 0.15 1.86 6.75 -83.20 -0.56 1.30 16 11 C -0.09 -0.87 9.96 36.01 0.36 -0.51 16 12 N -0.47 -5.85 11.97 32.50 0.39 -5.46 16 13 S 0.27 2.92 23.69 -107.50 -2.55 0.37 16 14 C -0.13 -1.50 6.52 -34.43 -0.22 -1.72 16 15 C -0.09 -0.86 10.19 36.00 0.37 -0.50 16 16 C 0.11 1.40 6.31 -3.93 -0.02 1.37 16 17 C -0.15 -2.37 5.64 -26.83 -0.15 -2.52 16 18 C 0.18 3.25 2.20 -67.88 -0.15 3.10 16 19 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 20 N -0.72 -16.42 4.33 -53.38 -0.23 -16.65 16 21 C -0.24 -6.18 9.93 -15.06 -0.15 -6.33 16 22 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -26.90 13.06 55.49 0.72 -26.17 16 25 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 29 H 0.05 0.60 6.70 -51.93 -0.35 0.25 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.56 7.22 -51.93 -0.37 1.19 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.30 5.72 -51.93 -0.30 1.00 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.84 7.39 -51.93 -0.38 0.45 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 42 H 0.07 0.88 6.22 -51.93 -0.32 0.55 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.38 9.51 7.51 -40.82 -0.31 9.20 16 47 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 LS Contribution 388.45 15.07 5.85 5.85 Total: -1.00 -30.23 388.45 -9.81 -40.04 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -7.48 Total: 7.62 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -1.06 Total: -4.58 kcal Atomic # 7 Polarization: -57.09 SS G_CDS: 0.36 Total: -56.72 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.55 Total: 0.37 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.23 -9.81 -40.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.032 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds