Wall clock time and date at job start Tue Mar 31 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47163 * 2 1 4 4 H 1.08995 * 109.49652 * 304.93445 * 3 2 1 5 5 C 1.53189 * 109.49925 * 65.00128 * 3 2 1 6 6 N 1.46922 * 108.77899 * 174.58727 * 5 3 2 7 7 C 1.34768 * 120.63318 * 126.36800 * 6 5 3 8 8 O 1.21621 * 120.00152 * 0.02562 * 7 6 5 9 9 C 1.47345 * 120.00432 * 179.97438 * 7 6 5 10 10 C 1.39237 * 123.08790 * 270.00624 * 9 7 6 11 11 C 1.50703 * 121.53097 * 359.96928 * 10 9 7 12 12 N 1.29510 * 116.93747 * 180.24723 * 10 9 7 13 13 S 1.69482 * 107.84364 * 359.63249 * 12 10 9 14 14 C 1.37901 * 123.08351 * 89.99843 * 9 7 6 15 15 C 1.50695 * 127.31868 * 0.02562 * 14 9 7 16 16 C 1.46929 * 118.73712 * 306.64317 * 6 5 3 17 17 C 1.52767 * 109.00832 * 53.30903 * 16 6 5 18 18 C 1.53041 * 109.37950 * 305.58786 * 17 16 6 19 19 H 1.08997 * 109.46201 * 301.21677 * 18 17 16 20 20 N 1.46507 * 109.45556 * 181.25829 * 18 17 16 21 21 C 1.36938 * 119.99701 * 84.93380 * 20 18 17 22 22 H 1.08001 * 120.00124 * 359.97438 * 21 20 18 23 23 C 1.38813 * 119.99687 * 179.97438 * 21 20 18 24 24 N 1.31613 * 120.00096 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99805 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47036 * 89.99746 * 25 23 21 27 27 H 1.48498 * 109.47105 * 210.00187 * 25 23 21 28 28 H 1.48497 * 109.47211 * 330.00178 * 25 23 21 29 29 H 1.09002 * 109.46830 * 299.99962 * 1 2 3 30 30 H 1.09004 * 109.47393 * 59.99597 * 1 2 3 31 31 H 1.09006 * 109.47317 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47166 * 240.00456 * 2 1 3 33 33 H 1.09004 * 109.47393 * 120.00403 * 2 1 3 34 34 H 1.09001 * 109.58616 * 54.79554 * 5 3 2 35 35 H 1.08995 * 109.70379 * 294.44618 * 5 3 2 36 36 H 1.09002 * 109.47152 * 90.00304 * 11 10 9 37 37 H 1.09001 * 109.46980 * 330.00404 * 11 10 9 38 38 H 1.09004 * 109.47113 * 210.00385 * 11 10 9 39 39 H 1.08994 * 109.47489 * 90.00251 * 15 14 9 40 40 H 1.09007 * 109.46960 * 209.99989 * 15 14 9 41 41 H 1.08999 * 109.47532 * 329.99770 * 15 14 9 42 42 H 1.08993 * 109.58892 * 173.14246 * 16 6 5 43 43 H 1.09000 * 109.58756 * 293.56878 * 16 6 5 44 44 H 1.08994 * 109.56345 * 185.55247 * 17 16 6 45 45 H 1.08994 * 109.36060 * 65.49653 * 17 16 6 46 46 H 0.96992 * 120.00091 * 264.93073 * 20 18 17 47 47 H 0.97005 * 119.99910 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6065 1.9816 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3493 7 6 1.4815 4.5579 1.5628 8 8 0.2817 4.4419 1.7247 9 6 2.1043 5.8927 1.6014 10 6 2.5904 6.4712 2.7709 11 6 2.5092 5.7578 4.0959 12 7 3.1106 7.6529 2.6687 13 16 3.0258 8.1186 1.0413 14 6 2.2592 6.6837 0.4824 15 6 1.8447 6.3599 -0.9297 16 6 3.6913 3.5904 1.1466 17 6 4.0740 2.8880 -0.1549 18 6 3.5655 1.4449 -0.1217 19 1 3.9989 0.9267 0.7337 20 7 3.9577 0.7608 -1.3564 21 6 5.1961 0.1850 -1.4563 22 1 5.8838 0.2355 -0.6251 23 6 5.5675 -0.4637 -2.6260 24 7 4.7292 -0.5257 -3.6388 25 14 7.2571 -1.2486 -2.7627 26 1 7.1877 -2.6571 -2.2972 27 1 7.7049 -1.2164 -4.1782 28 1 8.2219 -0.4963 -1.9211 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9907 1.5397 2.1546 35 1 0.5498 2.2172 1.3564 36 1 3.4095 5.1611 4.2430 37 1 1.6358 5.1058 4.1045 38 1 2.4237 6.4905 4.8984 39 1 0.8250 6.7065 -1.0976 40 1 2.5171 6.8573 -1.6289 41 1 1.8922 5.2820 -1.0844 42 1 3.9623 4.6443 1.0847 43 1 4.2182 3.1238 1.9790 44 1 5.1584 2.8892 -0.2651 45 1 3.6219 3.4138 -0.9957 46 1 3.3402 0.7157 -2.1030 47 1 4.9887 -0.9794 -4.4561 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037978273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:52 Heat of formation + Delta-G solvation = -16.089946 kcal Electronic energy + Delta-G solvation = -28228.581491 eV Core-core repulsion = 24536.871437 eV Total energy + Delta-G solvation = -3691.710054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81739 -39.96958 -38.77324 -36.19432 -35.32946 -34.30895 -33.45545 -31.14881 -30.91145 -30.10695 -29.04052 -26.74392 -25.25862 -24.69541 -23.46382 -22.28404 -21.91910 -20.93046 -19.63847 -19.19072 -19.00710 -18.04304 -17.19440 -16.75590 -16.13021 -15.93534 -15.65552 -15.46780 -15.44613 -14.98684 -14.75407 -14.61357 -14.47003 -14.35298 -14.29258 -13.83446 -13.62776 -13.55192 -13.24705 -13.18466 -13.12586 -13.05110 -12.83372 -12.66426 -12.51980 -12.23424 -12.15014 -12.08023 -11.83624 -11.79991 -11.56097 -11.49479 -11.08564 -11.04280 -10.82674 -10.42099 -9.74186 -9.68820 -8.93570 -7.89018 -5.15895 -0.53939 0.26462 0.65928 1.03890 1.41304 1.50171 1.50618 1.58336 1.98486 2.59558 3.28752 3.41679 3.45768 3.77452 3.81223 3.84922 4.00199 4.05506 4.15075 4.23413 4.28187 4.33383 4.41298 4.46290 4.49456 4.49660 4.60389 4.66637 4.69540 4.74216 4.81889 4.82407 4.89432 4.95812 5.03004 5.07051 5.07890 5.17798 5.31119 5.37763 5.47804 5.50555 5.53788 5.60068 5.66594 6.27033 6.32700 6.97901 7.39766 8.15946 8.38829 9.34362 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013139 B = 0.003475 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.503155 B = 8054.912462 C = 9079.741505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.054 0.946 5 C 0.125 3.875 6 N -0.590 5.590 7 C 0.598 3.402 8 O -0.567 6.567 9 C -0.231 4.231 10 C 0.151 3.849 11 C -0.089 4.089 12 N -0.492 5.492 13 S 0.311 5.689 14 C -0.132 4.132 15 C -0.089 4.089 16 C 0.120 3.880 17 C -0.140 4.140 18 C 0.180 3.820 19 H 0.049 0.951 20 N -0.729 5.729 21 C -0.229 4.229 22 H 0.077 0.923 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.963 3.037 26 H -0.291 1.291 27 H -0.301 1.301 28 H -0.269 1.269 29 H 0.065 0.935 30 H 0.045 0.955 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.065 0.935 45 H 0.048 0.952 46 H 0.371 0.629 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.646 14.156 12.656 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.112 4.112 4 H 0.073 0.927 5 C 0.002 3.998 6 N -0.321 5.321 7 C 0.383 3.617 8 O -0.447 6.447 9 C -0.252 4.252 10 C -0.026 4.026 11 C -0.151 4.151 12 N -0.313 5.313 13 S 0.467 5.533 14 C -0.263 4.263 15 C -0.148 4.148 16 C -0.003 4.003 17 C -0.181 4.181 18 C 0.071 3.929 19 H 0.067 0.933 20 N -0.368 5.368 21 C -0.361 4.361 22 H 0.095 0.905 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.793 3.207 26 H -0.218 1.218 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.084 0.916 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.121 0.879 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.084 0.916 45 H 0.067 0.933 46 H 0.203 0.797 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.106 16.069 12.965 21.269 hybrid contribution -0.002 -2.292 -1.039 2.517 sum -5.108 13.777 11.925 18.924 Atomic orbital electron populations 1.21782 0.94906 1.01879 1.01765 1.21352 0.96012 0.95121 1.02020 1.21619 0.95704 0.96520 0.97311 0.92727 1.21753 0.99538 0.81160 0.97322 1.48127 1.08787 1.06277 1.68919 1.17494 0.85393 0.83295 0.75499 1.90775 1.15538 1.86628 1.51774 1.20120 1.12263 0.99153 0.93622 1.21470 0.93170 0.90668 0.97324 1.20725 1.04298 1.00061 0.89986 1.76306 1.26856 1.16118 1.12041 1.83855 1.52045 1.17387 0.99963 1.26365 0.99725 0.99609 1.00585 1.20523 1.03641 1.03242 0.87349 1.21687 0.78900 1.01508 0.98190 1.22390 1.01297 0.97882 0.96498 1.20404 0.92397 0.90991 0.89063 0.93303 1.42561 1.15453 1.64864 1.13933 1.19571 0.92617 1.25621 0.98248 0.90545 1.25407 1.01279 1.03201 0.96599 1.69806 1.37010 1.50044 1.05172 0.85290 0.80760 0.78435 0.76197 1.21847 1.22829 1.19416 0.91619 0.93594 0.92240 0.93474 0.91601 0.89402 0.89073 0.87880 0.90516 0.88756 0.88197 0.87673 0.91160 0.89849 0.89306 0.91596 0.93337 0.79700 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.67 71.98 0.70 -3.00 16 2 C -0.11 -3.24 5.31 30.59 0.16 -3.08 16 3 C -0.09 -2.75 1.93 -10.72 -0.02 -2.77 16 4 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 5 C 0.12 3.15 5.32 86.36 0.46 3.61 16 6 N -0.59 -14.72 2.98 -823.72 -2.45 -17.17 16 7 C 0.60 16.19 5.65 86.64 0.49 16.68 16 8 O -0.57 -18.88 16.52 -4.10 -0.07 -18.95 16 9 C -0.23 -5.54 3.62 -20.72 -0.07 -5.61 16 10 C 0.15 3.37 6.75 43.14 0.29 3.66 16 11 C -0.09 -1.54 9.96 71.24 0.71 -0.83 16 12 N -0.49 -11.31 11.97 -51.10 -0.61 -11.93 16 13 S 0.31 5.96 23.69 -56.49 -1.34 4.63 16 14 C -0.13 -2.80 6.52 25.60 0.17 -2.63 16 15 C -0.09 -1.62 10.19 71.23 0.73 -0.90 16 16 C 0.12 2.81 6.31 86.22 0.54 3.35 16 17 C -0.14 -4.26 5.64 30.53 0.17 -4.09 16 18 C 0.18 6.27 2.20 45.02 0.10 6.37 16 19 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 20 N -0.73 -33.71 4.33 -322.80 -1.40 -35.11 16 21 C -0.23 -11.82 9.93 84.03 0.83 -10.98 16 22 H 0.08 3.78 7.83 -2.91 -0.02 3.76 16 23 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 24 N -0.97 -57.42 13.06 21.65 0.28 -57.13 16 25 Si 0.96 44.60 29.55 68.60 2.03 46.62 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 29 H 0.06 1.46 6.70 -2.39 -0.02 1.45 16 30 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.05 1.79 7.22 -2.39 -0.02 1.77 16 33 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.09 2.41 5.72 -2.39 -0.01 2.40 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.42 7.39 -2.39 -0.02 1.40 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 42 H 0.08 1.83 6.22 -2.39 -0.01 1.82 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.37 18.99 7.51 -92.71 -0.70 18.30 16 47 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 Total: -1.00 -65.29 388.45 2.44 -62.85 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.28 Total: 29.93 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.72 Total: -3.74 kcal Atomic # 7 Polarization: -117.15 SS G_CDS: -4.18 Total: -121.34 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.07 Total: -18.95 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.34 Total: 4.63 kcal Total: -65.29 2.44 -62.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037978273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.757 kcal (2) G-P(sol) polarization free energy of solvation -65.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds