Wall clock time and date at job start Tue Mar 31 2020 19:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 H 1.09001 * 109.49844 * 55.06335 * 3 2 1 5 5 C 1.53196 * 109.49528 * 295.00092 * 3 2 1 6 6 N 1.46929 * 108.77486 * 185.37572 * 5 3 2 7 7 C 1.34766 * 120.63348 * 233.63046 * 6 5 3 8 8 O 1.21286 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00319 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47385 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46865 * 179.97438 * 10 9 7 12 12 N 1.29036 * 124.91693 * 90.00704 * 11 10 9 13 13 C 1.31782 * 117.12705 * 179.97438 * 12 11 10 14 14 C 1.33633 * 114.49893 * 359.97438 * 13 12 11 15 15 S 1.70975 * 124.92218 * 269.69672 * 11 10 9 16 16 C 1.46924 * 118.73409 * 53.61317 * 6 5 3 17 17 C 1.53191 * 108.77817 * 306.38734 * 16 6 5 18 18 C 1.53035 * 109.52733 * 175.14937 * 3 2 1 19 19 H 1.09004 * 109.45792 * 301.35459 * 18 3 2 20 20 N 1.46498 * 109.46284 * 61.30825 * 18 3 2 21 21 C 1.36935 * 120.00292 * 204.99969 * 20 18 3 22 22 H 1.08004 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00109 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99938 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47304 * 59.99858 * 25 23 21 27 27 H 1.48502 * 109.47049 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47290 * 299.99922 * 25 23 21 29 29 H 1.08999 * 109.47568 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47175 * 300.00264 * 1 2 3 31 31 H 1.08999 * 109.47235 * 59.99970 * 1 2 3 32 32 H 1.09001 * 109.46960 * 240.00194 * 2 1 3 33 33 H 1.08999 * 109.47235 * 120.00030 * 2 1 3 34 34 H 1.08998 * 109.58804 * 305.17010 * 5 3 2 35 35 H 1.09003 * 109.58394 * 65.59587 * 5 3 2 36 36 H 1.09003 * 109.47289 * 300.00768 * 9 7 6 37 37 H 1.09005 * 109.46555 * 59.99877 * 9 7 6 38 38 H 1.08998 * 109.47327 * 299.99957 * 10 9 7 39 39 H 1.09001 * 109.46635 * 60.00528 * 10 9 7 40 40 H 1.07996 * 122.74782 * 180.02562 * 13 12 11 41 41 H 1.08007 * 126.03900 * 179.97438 * 14 13 12 42 42 H 1.08999 * 109.58511 * 186.60055 * 16 6 5 43 43 H 1.09005 * 109.70744 * 66.24599 * 16 6 5 44 44 H 1.09006 * 109.49784 * 294.68835 * 17 16 6 45 45 H 1.08997 * 109.52766 * 174.60233 * 17 16 6 46 46 H 0.97006 * 119.99685 * 25.00375 * 20 18 3 47 47 H 0.97003 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4805 4.5579 -1.5625 8 8 0.2840 4.4418 -1.7233 9 6 2.1169 5.9234 -1.6016 10 6 1.0408 6.9805 -1.8578 11 6 1.6771 8.3460 -1.8961 12 7 2.1394 8.9158 -2.9575 13 6 2.6649 10.1159 -2.8148 14 6 2.6443 10.5847 -1.5636 15 16 1.8843 9.3676 -0.5409 16 6 3.6915 3.5907 -1.1516 17 6 4.0734 2.8889 0.1554 18 6 3.5655 1.4456 0.1220 19 1 3.8574 0.9365 1.0406 20 7 4.1485 0.7495 -1.0277 21 6 5.3869 0.1743 -0.9240 22 1 5.9336 0.2333 0.0055 23 6 5.9395 -0.4848 -2.0136 24 7 5.2730 -0.5572 -3.1462 25 14 7.6285 -1.2701 -1.8718 26 1 7.6073 -2.3002 -0.8024 27 1 7.9885 -1.9065 -3.1644 28 1 8.6321 -0.2285 -1.5359 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9912 1.5400 -2.1547 35 1 0.5496 2.2169 -1.3541 36 1 2.6045 6.1245 -0.6476 37 1 2.8563 5.9568 -2.4017 38 1 0.5537 6.7793 -2.8119 39 1 0.3011 6.9471 -1.0579 40 1 3.0776 10.6750 -3.6415 41 1 3.0237 11.5418 -1.2373 42 1 3.9629 4.6448 -1.0931 43 1 4.2173 3.1236 -1.9844 44 1 3.6208 3.4144 0.9964 45 1 5.1577 2.8904 0.2664 46 1 3.6573 0.6962 -1.8625 47 1 5.6590 -1.0181 -3.9075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037989754.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:57 Heat of formation + Delta-G solvation = 8.756433 kcal Electronic energy + Delta-G solvation = -27316.704689 eV Core-core repulsion = 23626.072055 eV Total energy + Delta-G solvation = -3690.632634 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.22725 -39.77594 -37.92032 -34.45654 -34.08110 -33.67956 -31.70020 -30.10005 -29.40519 -28.53164 -26.56852 -24.76579 -23.85789 -23.50248 -22.98963 -20.79920 -20.16631 -19.45164 -18.32668 -18.13215 -17.37808 -16.79770 -15.83797 -15.78543 -15.58542 -14.81532 -14.67240 -14.38117 -14.23292 -14.00009 -13.70426 -13.48721 -13.35323 -13.26923 -12.85493 -12.69599 -12.43847 -12.28726 -12.20925 -11.77167 -11.65606 -11.42627 -11.27090 -11.08813 -10.96471 -10.81327 -10.71581 -10.30611 -10.27271 -10.20113 -9.87683 -9.79438 -9.68012 -9.57894 -9.54895 -9.12399 -8.93176 -8.22474 -6.99098 -5.80203 -3.08777 0.43605 1.09975 1.49337 2.57820 2.81343 3.25080 3.40775 3.46097 3.46961 3.91534 4.56135 4.56804 4.81478 4.87043 4.95892 4.98567 5.15239 5.21221 5.28820 5.33816 5.36182 5.52335 5.55396 5.58189 5.67465 5.70166 5.80134 5.82853 5.84538 5.91845 5.94057 6.09912 6.15492 6.19616 6.35390 6.38518 6.41058 6.56551 6.62886 6.70561 6.76579 6.93814 7.00888 7.49833 7.66615 7.71363 8.37136 8.38289 9.49863 10.06581 10.41592 11.42060 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.002821 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.352157 B = 9922.769475 C =11284.878560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.065 0.935 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.515 3.485 8 O -0.554 6.554 9 C -0.133 4.133 10 C -0.029 4.029 11 C 0.058 3.942 12 N -0.474 5.474 13 C 0.040 3.960 14 C -0.265 4.265 15 S 0.119 5.881 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.050 0.950 20 N -0.718 5.718 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.413 18.250 6.487 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.303 3.697 8 O -0.434 6.434 9 C -0.175 4.175 10 C -0.070 4.070 11 C -0.220 4.220 12 N -0.188 5.188 13 C -0.111 4.111 14 C -0.405 4.405 15 S 0.373 5.627 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.214 1.214 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.193 0.807 41 H 0.194 0.806 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.142 17.753 6.979 20.740 hybrid contribution 1.556 0.181 -0.957 1.835 sum -6.586 17.934 6.022 20.032 Atomic orbital electron populations 1.21850 0.96813 1.01027 1.01349 1.21415 0.94275 0.95767 1.03355 1.21743 0.97331 0.96129 0.97049 0.91622 1.21696 0.98790 0.81625 0.98285 1.48119 1.08696 1.06588 1.69676 1.20349 0.86846 0.85973 0.76516 1.90666 1.14873 1.86765 1.51065 1.21646 0.99286 0.91877 1.04645 1.20018 0.96515 0.84631 1.05817 1.27198 1.01922 1.01786 0.91070 1.66312 1.12441 1.09709 1.30347 1.21851 1.00565 0.91756 0.96903 1.27092 1.10842 1.05622 0.96895 1.84098 1.54141 1.09761 1.14749 1.21751 0.79133 1.00038 1.00115 1.22528 1.01807 0.99344 0.95435 1.20217 0.89778 0.90617 0.92591 0.93172 1.42471 1.18981 1.64053 1.10580 1.19163 0.93578 1.27195 0.97026 0.91341 1.24700 0.98516 1.01460 0.96028 1.69637 1.38117 1.48020 1.02246 0.86321 0.84382 0.79193 0.76565 1.21387 1.21814 1.21373 0.93180 0.93403 0.92762 0.90496 0.92062 0.90759 0.89551 0.88765 0.88179 0.87809 0.88772 0.80742 0.80626 0.91258 0.89605 0.93321 0.90744 0.78078 0.93461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 37.15 0.36 -1.70 16 2 C -0.11 -1.73 5.19 -26.73 -0.14 -1.87 16 3 C -0.10 -1.63 2.14 -90.50 -0.19 -1.82 16 4 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 5 C 0.12 1.95 5.03 -3.71 -0.02 1.93 16 6 N -0.60 -9.32 2.97 -172.77 -0.51 -9.83 16 7 C 0.52 7.72 7.70 -10.99 -0.08 7.63 16 8 O -0.55 -9.77 15.39 5.55 0.09 -9.68 16 9 C -0.13 -1.53 4.03 -27.88 -0.11 -1.64 16 10 C -0.03 -0.32 5.09 -27.88 -0.14 -0.46 16 11 C 0.06 0.63 6.64 -13.45 -0.09 0.54 16 12 N -0.47 -5.66 10.54 -11.87 -0.13 -5.78 16 13 C 0.04 0.38 11.35 -19.19 -0.22 0.16 16 14 C -0.27 -2.09 11.36 29.12 0.33 -1.76 16 15 S 0.12 1.02 23.18 -107.50 -2.49 -1.47 16 16 C 0.11 1.71 6.08 -3.71 -0.02 1.68 16 17 C -0.15 -2.37 5.78 -26.61 -0.15 -2.52 16 18 C 0.18 3.22 2.53 -67.89 -0.17 3.05 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -16.15 3.72 -53.39 -0.20 -16.34 16 21 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 22 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -26.84 13.06 55.49 0.72 -26.12 16 25 Si 0.90 21.60 29.55 -169.99 -5.02 16.58 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 32 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.38 6.64 -51.93 -0.34 1.04 16 35 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 36 H 0.09 0.92 7.69 -51.93 -0.40 0.52 16 37 H 0.10 1.15 7.94 -51.93 -0.41 0.74 16 38 H 0.10 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 40 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 43 H 0.09 1.57 7.74 -51.93 -0.40 1.17 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.38 9.31 5.94 -40.82 -0.24 9.07 16 47 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -30.24 385.15 -9.98 -40.22 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -7.34 Total: 10.06 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.90 Total: -3.43 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.11 Total: -58.08 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.24 -9.98 -40.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989754.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.975 kcal (2) G-P(sol) polarization free energy of solvation -30.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds