Wall clock time and date at job start Tue Mar 31 2020 19:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.49961 * 305.00645 * 3 2 1 5 5 C 1.53196 * 109.49598 * 65.06552 * 3 2 1 6 6 N 1.46923 * 108.77932 * 174.58776 * 5 3 2 7 7 C 1.34777 * 120.63509 * 126.36712 * 6 5 3 8 8 O 1.21281 * 119.99530 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47340 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47578 * 179.97438 * 10 9 7 12 12 N 1.29024 * 124.91587 * 89.69082 * 11 10 9 13 13 C 1.31786 * 117.12245 * 179.81621 * 12 11 10 14 14 C 1.33641 * 114.50345 * 0.47465 * 13 12 11 15 15 S 1.70975 * 124.91558 * 270.00072 * 11 10 9 16 16 C 1.46922 * 118.73739 * 306.39669 * 6 5 3 17 17 C 1.53195 * 108.78179 * 53.60510 * 16 6 5 18 18 C 1.53038 * 109.50012 * 184.93683 * 3 2 1 19 19 H 1.08997 * 109.46213 * 58.66491 * 18 3 2 20 20 N 1.46500 * 109.45876 * 298.70327 * 18 3 2 21 21 C 1.36936 * 119.99759 * 155.00443 * 20 18 3 22 22 H 1.08001 * 120.00340 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99858 * 180.02562 * 21 20 18 24 24 N 1.31609 * 120.00047 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00008 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47125 * 89.99456 * 25 23 21 27 27 H 1.48491 * 109.47499 * 210.00017 * 25 23 21 28 28 H 1.48502 * 109.47122 * 330.00065 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.58552 * 294.37777 * 5 3 2 35 35 H 1.09004 * 109.58283 * 54.79884 * 5 3 2 36 36 H 1.09008 * 109.47050 * 299.99697 * 9 7 6 37 37 H 1.08997 * 109.47739 * 59.99737 * 9 7 6 38 38 H 1.09004 * 109.47053 * 299.99874 * 10 9 7 39 39 H 1.09005 * 109.47374 * 59.99350 * 10 9 7 40 40 H 1.08007 * 122.74823 * 180.23020 * 13 12 11 41 41 H 1.07998 * 126.03778 * 179.71905 * 14 13 12 42 42 H 1.09000 * 109.58911 * 173.39097 * 16 6 5 43 43 H 1.09005 * 109.58750 * 293.67208 * 16 6 5 44 44 H 1.08998 * 109.49477 * 65.31125 * 17 16 6 45 45 H 1.08997 * 109.49886 * 185.41613 * 17 16 6 46 46 H 0.97003 * 120.00345 * 335.00027 * 20 18 3 47 47 H 0.97008 * 120.00283 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4832 4.5574 1.5648 8 8 0.2869 4.4415 1.7273 9 6 2.1200 5.9226 1.6030 10 6 1.0447 6.9800 1.8608 11 6 1.6816 8.3452 1.8997 12 7 1.8474 9.1121 0.8754 13 6 2.4206 10.2800 1.0859 14 6 2.7659 10.5069 2.3568 15 16 2.2958 9.0989 3.3061 16 6 3.6933 3.5894 1.1513 17 6 4.0739 2.8881 -0.1564 18 6 3.5653 1.4450 -0.1241 19 1 3.8557 0.9365 -1.0435 20 7 4.1496 0.7479 1.0243 21 6 5.3876 0.1722 0.9184 22 1 5.9331 0.2317 -0.0118 23 6 5.9410 -0.4888 2.0064 24 7 5.2761 -0.5617 3.1398 25 14 7.6294 -1.2747 1.8618 26 1 8.6696 -0.2877 2.2480 27 1 7.7060 -2.4526 2.7626 28 1 7.8551 -1.7084 0.4596 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 0.5511 2.2168 1.3558 35 1 1.9931 1.5388 2.1548 36 1 2.8607 5.9558 2.4021 37 1 2.6062 6.1237 0.6484 38 1 0.3037 6.9469 1.0621 39 1 0.5588 6.7788 2.8156 40 1 2.6002 10.9936 0.2953 41 1 3.2485 11.3960 2.7351 42 1 3.9652 4.6433 1.0932 43 1 4.2178 3.1223 1.9850 44 1 3.6208 3.4143 -0.9966 45 1 5.1582 2.8894 -0.2677 46 1 3.6596 0.6941 1.8597 47 1 5.6629 -1.0233 3.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037989760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:00 Heat of formation + Delta-G solvation = 8.529239 kcal Electronic energy + Delta-G solvation = -27316.943692 eV Core-core repulsion = 23626.301206 eV Total energy + Delta-G solvation = -3690.642486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22697 -39.77390 -37.91914 -34.45678 -34.08193 -33.67907 -31.70035 -30.09747 -29.40328 -28.52996 -26.56731 -24.76560 -23.85677 -23.50525 -22.98979 -20.79540 -20.15661 -19.45683 -18.34336 -18.10931 -17.38237 -16.80150 -15.85660 -15.72544 -15.62418 -14.81605 -14.66645 -14.41760 -14.16893 -13.99659 -13.67816 -13.59910 -13.31618 -13.21698 -12.92800 -12.60725 -12.45450 -12.30300 -12.21117 -11.75694 -11.65250 -11.42480 -11.26945 -11.08549 -10.97853 -10.81160 -10.72317 -10.30497 -10.26113 -10.17910 -9.87872 -9.79408 -9.67918 -9.57685 -9.54940 -9.11998 -8.93748 -8.22544 -6.99314 -5.80900 -3.09225 0.44019 1.10834 1.50554 2.57413 2.81207 3.25082 3.39842 3.46115 3.47293 3.91321 4.55770 4.56918 4.81588 4.87099 4.95669 4.99266 5.15555 5.21475 5.28846 5.34100 5.37753 5.51961 5.55776 5.58051 5.66585 5.70594 5.80886 5.82765 5.84418 5.92369 5.94244 6.09628 6.15832 6.19728 6.35585 6.39098 6.41541 6.56870 6.63298 6.70970 6.77078 6.94121 7.01138 7.49223 7.66944 7.71268 8.37045 8.37641 9.49398 10.06137 10.41293 11.41455 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.002842 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.674251 B = 9849.137980 C =11267.847815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.066 0.934 5 C 0.118 3.882 6 N -0.599 5.599 7 C 0.515 3.485 8 O -0.554 6.554 9 C -0.133 4.133 10 C -0.029 4.029 11 C 0.057 3.943 12 N -0.475 5.475 13 C 0.039 3.961 14 C -0.266 4.266 15 S 0.123 5.877 16 C 0.112 3.888 17 C -0.150 4.150 18 C 0.178 3.822 19 H 0.051 0.949 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.384 0.616 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.862 17.883 -2.525 19.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.084 0.916 5 C -0.004 4.004 6 N -0.331 5.331 7 C 0.303 3.697 8 O -0.434 6.434 9 C -0.175 4.175 10 C -0.070 4.070 11 C -0.221 4.221 12 N -0.189 5.189 13 C -0.112 4.112 14 C -0.405 4.405 15 S 0.377 5.623 16 C -0.010 4.010 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.068 0.932 20 N -0.361 5.361 21 C -0.368 4.368 22 H 0.087 0.913 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.735 3.265 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.209 1.209 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.192 0.808 41 H 0.194 0.806 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.424 17.269 -1.943 18.897 hybrid contribution 1.343 0.328 -0.470 1.460 sum -6.082 17.596 -2.413 18.773 Atomic orbital electron populations 1.21853 0.96814 1.01019 1.01359 1.21415 0.94275 0.95761 1.03347 1.21745 0.97333 0.96137 0.97077 0.91603 1.21692 0.98785 0.81622 0.98270 1.48128 1.08727 1.06596 1.69656 1.20351 0.86851 0.85949 0.76536 1.90665 1.14865 1.86750 1.51080 1.21645 0.99062 0.91844 1.04908 1.20016 0.97020 0.84453 1.05487 1.27190 1.02207 1.01438 0.91248 1.66307 1.16400 1.04293 1.31920 1.21841 0.98943 0.94303 0.96113 1.27103 1.11760 1.04209 0.97410 1.84168 1.53697 1.10042 1.14409 1.21755 0.79120 1.00050 1.00085 1.22524 1.01807 0.99319 0.95475 1.20221 0.89771 0.90608 0.92600 0.93152 1.42479 1.19016 1.64010 1.10593 1.19212 0.93573 1.26960 0.97069 0.91289 1.24695 0.98519 1.01481 0.96054 1.69644 1.38024 1.48113 1.02260 0.86247 0.84438 0.78769 0.77051 1.21849 1.21902 1.20867 0.92771 0.93182 0.93388 0.90503 0.92061 0.89556 0.90762 0.88687 0.88260 0.87880 0.88712 0.80779 0.80630 0.91257 0.89621 0.93281 0.90746 0.78092 0.93536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 37.16 0.36 -1.71 16 2 C -0.11 -1.74 5.19 -26.73 -0.14 -1.88 16 3 C -0.10 -1.65 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 5 C 0.12 1.96 5.03 -3.71 -0.02 1.94 16 6 N -0.60 -9.31 2.97 -172.77 -0.51 -9.83 16 7 C 0.52 7.71 7.70 -10.99 -0.08 7.63 16 8 O -0.55 -9.76 15.39 5.56 0.09 -9.68 16 9 C -0.13 -1.53 4.03 -27.89 -0.11 -1.64 16 10 C -0.03 -0.31 5.08 -27.89 -0.14 -0.46 16 11 C 0.06 0.61 6.64 -13.46 -0.09 0.52 16 12 N -0.47 -5.55 10.54 -11.86 -0.13 -5.68 16 13 C 0.04 0.36 11.35 -19.18 -0.22 0.14 16 14 C -0.27 -2.11 11.37 29.12 0.33 -1.78 16 15 S 0.12 1.09 23.18 -107.50 -2.49 -1.40 16 16 C 0.11 1.71 6.08 -3.71 -0.02 1.69 16 17 C -0.15 -2.40 5.78 -26.61 -0.15 -2.56 16 18 C 0.18 3.24 2.53 -67.89 -0.17 3.07 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.72 -16.12 3.73 -53.38 -0.20 -16.32 16 21 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 25 Si 0.90 21.54 29.55 -169.99 -5.02 16.51 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 29 H 0.05 0.74 6.70 -51.93 -0.35 0.39 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.44 5.72 -51.93 -0.30 1.14 16 35 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 36 H 0.09 0.98 7.94 -51.92 -0.41 0.57 16 37 H 0.10 1.09 7.69 -51.93 -0.40 0.69 16 38 H 0.10 1.22 8.10 -51.93 -0.42 0.80 16 39 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 42 H 0.07 0.86 5.93 -51.93 -0.31 0.55 16 43 H 0.09 1.54 7.75 -51.93 -0.40 1.14 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.38 9.26 5.94 -40.82 -0.24 9.02 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -30.07 385.16 -9.98 -40.05 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -7.34 Total: 9.99 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.90 Total: -3.50 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.11 Total: -57.79 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.40 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.07 -9.98 -40.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.584 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds