Wall clock time and date at job start Tue Mar 31 2020 19:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09002 * 109.49961 * 305.00645 * 3 2 1 5 5 C 1.53196 * 109.49598 * 65.06552 * 3 2 1 6 6 N 1.46923 * 108.77932 * 174.58776 * 5 3 2 7 7 C 1.34777 * 120.63509 * 126.36712 * 6 5 3 8 8 O 1.21281 * 119.99530 * 0.02562 * 7 6 5 9 9 C 1.50694 * 120.00380 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47340 * 180.02562 * 9 7 6 11 11 C 1.50697 * 109.47578 * 179.97438 * 10 9 7 12 12 N 1.29024 * 124.91587 * 89.69082 * 11 10 9 13 13 C 1.31786 * 117.12245 * 179.81621 * 12 11 10 14 14 C 1.33641 * 114.50345 * 0.47465 * 13 12 11 15 15 S 1.70975 * 124.91558 * 270.00072 * 11 10 9 16 16 C 1.46922 * 118.73739 * 306.39669 * 6 5 3 17 17 C 1.53195 * 108.78179 * 53.60510 * 16 6 5 18 18 C 1.53038 * 109.50012 * 184.93683 * 3 2 1 19 19 H 1.08997 * 109.46213 * 58.66491 * 18 3 2 20 20 N 1.46500 * 109.45876 * 298.70327 * 18 3 2 21 21 C 1.36936 * 119.99759 * 155.00443 * 20 18 3 22 22 H 1.08001 * 120.00340 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99858 * 180.02562 * 21 20 18 24 24 N 1.31609 * 120.00047 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 120.00008 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47125 * 89.99456 * 25 23 21 27 27 H 1.48491 * 109.47499 * 210.00017 * 25 23 21 28 28 H 1.48502 * 109.47122 * 330.00065 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.58552 * 294.37777 * 5 3 2 35 35 H 1.09004 * 109.58283 * 54.79884 * 5 3 2 36 36 H 1.09008 * 109.47050 * 299.99697 * 9 7 6 37 37 H 1.08997 * 109.47739 * 59.99737 * 9 7 6 38 38 H 1.09004 * 109.47053 * 299.99874 * 10 9 7 39 39 H 1.09005 * 109.47374 * 59.99350 * 10 9 7 40 40 H 1.08007 * 122.74823 * 180.23020 * 13 12 11 41 41 H 1.07998 * 126.03778 * 179.71905 * 14 13 12 42 42 H 1.09000 * 109.58911 * 173.39097 * 16 6 5 43 43 H 1.09005 * 109.58750 * 293.67208 * 16 6 5 44 44 H 1.08998 * 109.49477 * 65.31125 * 17 16 6 45 45 H 1.08997 * 109.49886 * 185.41613 * 17 16 6 46 46 H 0.97003 * 120.00345 * 335.00027 * 20 18 3 47 47 H 0.97008 * 120.00283 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9820 -0.8416 5 6 1.6365 2.1275 1.3095 6 7 2.2429 3.4651 1.3500 7 6 1.4832 4.5574 1.5648 8 8 0.2869 4.4415 1.7273 9 6 2.1200 5.9226 1.6030 10 6 1.0447 6.9800 1.8608 11 6 1.6816 8.3452 1.8997 12 7 1.8474 9.1121 0.8754 13 6 2.4206 10.2800 1.0859 14 6 2.7659 10.5069 2.3568 15 16 2.2958 9.0989 3.3061 16 6 3.6933 3.5894 1.1513 17 6 4.0739 2.8881 -0.1564 18 6 3.5653 1.4450 -0.1241 19 1 3.8557 0.9365 -1.0435 20 7 4.1496 0.7479 1.0243 21 6 5.3876 0.1722 0.9184 22 1 5.9331 0.2317 -0.0118 23 6 5.9410 -0.4888 2.0064 24 7 5.2761 -0.5617 3.1398 25 14 7.6294 -1.2747 1.8618 26 1 8.6696 -0.2877 2.2480 27 1 7.7060 -2.4526 2.7626 28 1 7.8551 -1.7084 0.4596 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 0.5511 2.2168 1.3558 35 1 1.9931 1.5388 2.1548 36 1 2.8607 5.9558 2.4021 37 1 2.6062 6.1237 0.6484 38 1 0.3037 6.9469 1.0621 39 1 0.5588 6.7788 2.8156 40 1 2.6002 10.9936 0.2953 41 1 3.2485 11.3960 2.7351 42 1 3.9652 4.6433 1.0932 43 1 4.2178 3.1223 1.9850 44 1 3.6208 3.4143 -0.9966 45 1 5.1582 2.8894 -0.2677 46 1 3.6596 0.6941 1.8597 47 1 5.6629 -1.0233 3.9003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037989760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:59 Heat of formation + Delta-G solvation = -8.459145 kcal Electronic energy + Delta-G solvation = -27317.680364 eV Core-core repulsion = 23626.301206 eV Total energy + Delta-G solvation = -3691.379158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.43719 -40.57091 -39.26760 -35.86935 -35.42092 -34.83840 -33.38418 -31.03230 -30.88987 -29.82728 -27.58698 -26.05510 -25.32966 -25.02820 -23.91860 -22.12964 -20.91684 -20.68291 -19.59431 -19.21644 -19.02605 -17.98469 -17.05818 -16.85949 -16.45688 -16.37864 -15.90648 -15.62174 -15.46844 -15.29935 -14.88800 -14.75900 -14.62016 -14.36923 -14.21286 -13.86441 -13.63183 -13.48528 -13.30324 -13.00708 -12.84162 -12.77094 -12.62834 -12.39881 -12.34764 -12.18237 -12.12974 -12.04412 -11.82309 -11.56135 -11.43447 -11.10431 -10.92333 -10.73555 -10.59775 -10.35489 -9.82038 -9.56789 -8.89856 -7.86925 -5.12751 -0.25295 0.43093 0.83258 1.50343 1.51255 1.58645 1.61636 1.84332 2.07302 2.61103 3.12237 3.46824 3.57489 3.79320 3.88592 3.95717 4.03649 4.06080 4.11587 4.21783 4.30870 4.38590 4.42495 4.47187 4.49497 4.54986 4.58088 4.62874 4.72925 4.81450 4.87096 4.91411 4.98819 5.03256 5.07323 5.18919 5.24482 5.25649 5.27500 5.33408 5.42435 5.53408 5.62491 5.69061 6.34950 6.48269 6.79524 7.15109 7.42679 8.19126 8.42843 9.36291 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.002842 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.674251 B = 9849.137980 C =11267.847815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.083 0.917 5 C 0.125 3.875 6 N -0.602 5.602 7 C 0.515 3.485 8 O -0.582 6.582 9 C -0.124 4.124 10 C -0.022 4.022 11 C 0.036 3.964 12 N -0.500 5.500 13 C 0.019 3.981 14 C -0.252 4.252 15 S 0.139 5.861 16 C 0.119 3.881 17 C -0.143 4.143 18 C 0.172 3.828 19 H 0.045 0.955 20 N -0.724 5.724 21 C -0.225 4.225 22 H 0.074 0.926 23 C -0.072 4.072 24 N -0.968 5.968 25 Si 0.962 3.038 26 H -0.290 1.290 27 H -0.303 1.303 28 H -0.273 1.273 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.086 0.914 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.196 0.804 41 H 0.206 0.794 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.374 0.626 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.466 20.094 -3.715 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.102 0.898 5 C 0.002 3.998 6 N -0.333 5.333 7 C 0.304 3.696 8 O -0.463 6.463 9 C -0.165 4.165 10 C -0.063 4.063 11 C -0.241 4.241 12 N -0.215 5.215 13 C -0.131 4.131 14 C -0.391 4.391 15 S 0.392 5.608 16 C -0.004 4.004 17 C -0.184 4.184 18 C 0.063 3.937 19 H 0.063 0.937 20 N -0.365 5.365 21 C -0.357 4.357 22 H 0.092 0.908 23 C -0.265 4.265 24 N -0.620 5.620 25 Si 0.793 3.207 26 H -0.217 1.217 27 H -0.230 1.230 28 H -0.198 1.198 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.213 0.787 41 H 0.223 0.777 42 H 0.122 0.878 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.028 19.507 -3.189 20.979 hybrid contribution 1.170 -0.274 -0.134 1.209 sum -5.858 19.234 -3.322 20.379 Atomic orbital electron populations 1.21784 0.94759 1.01894 1.01874 1.21340 0.96063 0.95293 1.01685 1.21651 0.95788 0.96395 0.97329 0.89831 1.21497 0.98636 0.82164 0.97499 1.48171 1.08904 1.06395 1.69831 1.20939 0.86484 0.86822 0.75325 1.90652 1.16233 1.87254 1.52144 1.21620 0.99280 0.89502 1.06057 1.19873 0.96587 0.84875 1.04999 1.27038 1.03447 1.01475 0.92160 1.66297 1.17016 1.05349 1.32881 1.22217 0.99364 0.94150 0.97394 1.27502 1.10319 1.04514 0.96744 1.84114 1.52984 1.10249 1.13425 1.21684 0.78547 1.01721 0.98399 1.22400 1.01432 0.97714 0.96833 1.20445 0.91068 0.91527 0.90639 0.93677 1.42581 1.18190 1.64310 1.11424 1.19549 0.94277 1.25139 0.96709 0.90791 1.25357 1.01705 1.03254 0.96151 1.69797 1.39469 1.49852 1.02845 0.85303 0.80976 0.77429 0.77027 1.21743 1.23049 1.19802 0.93150 0.92218 0.91870 0.93735 0.92055 0.89612 0.93451 0.87145 0.87101 0.89191 0.88738 0.78736 0.77699 0.87808 0.92778 0.90678 0.91449 0.79286 0.94418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.81 9.67 71.98 0.70 -3.11 16 2 C -0.11 -3.34 5.19 30.59 0.16 -3.18 16 3 C -0.09 -2.88 2.14 -10.72 -0.02 -2.91 16 4 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.12 4.15 5.03 86.36 0.43 4.58 16 6 N -0.60 -18.22 2.97 -818.90 -2.43 -20.65 16 7 C 0.51 14.85 7.70 87.66 0.67 15.53 16 8 O -0.58 -20.22 15.39 -3.03 -0.05 -20.27 16 9 C -0.12 -2.61 4.03 29.84 0.12 -2.49 16 10 C -0.02 -0.47 5.08 29.85 0.15 -0.31 16 11 C 0.04 0.72 6.64 88.52 0.59 1.31 16 12 N -0.50 -10.89 10.54 -191.44 -2.02 -12.91 16 13 C 0.02 0.31 11.35 83.66 0.95 1.25 16 14 C -0.25 -3.27 11.37 66.78 0.76 -2.51 16 15 S 0.14 2.17 23.18 -56.49 -1.31 0.86 16 16 C 0.12 3.46 6.08 86.36 0.53 3.99 16 17 C -0.14 -4.33 5.78 30.68 0.18 -4.16 16 18 C 0.17 6.14 2.53 45.02 0.11 6.25 16 19 H 0.05 1.67 8.08 -2.39 -0.02 1.65 16 20 N -0.72 -32.99 3.73 -322.81 -1.20 -34.20 16 21 C -0.22 -11.56 9.93 84.03 0.83 -10.73 16 22 H 0.07 3.68 7.83 -2.91 -0.02 3.66 16 23 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 24 N -0.97 -57.09 13.06 21.65 0.28 -56.81 16 25 Si 0.96 44.80 29.55 68.60 2.03 46.83 16 26 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 27 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 28 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 29 H 0.05 1.35 6.70 -2.39 -0.02 1.33 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.04 1.69 7.70 -2.39 -0.02 1.68 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.09 2.87 5.72 -2.39 -0.01 2.85 16 35 H 0.05 1.83 6.64 -2.39 -0.02 1.82 16 36 H 0.11 2.02 7.94 -2.38 -0.02 2.01 16 37 H 0.11 2.14 7.69 -2.39 -0.02 2.12 16 38 H 0.09 2.10 8.10 -2.38 -0.02 2.08 16 39 H 0.09 1.94 8.10 -2.38 -0.02 1.92 16 40 H 0.20 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.21 1.31 8.06 -2.91 -0.02 1.28 16 42 H 0.10 2.31 5.93 -2.39 -0.01 2.29 16 43 H 0.05 1.95 7.75 -2.38 -0.02 1.94 16 44 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 46 H 0.37 18.70 5.94 -92.71 -0.55 18.15 16 47 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 Total: -1.00 -65.71 385.16 2.35 -63.36 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 0.42 Total: 33.77 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 6.63 Total: 0.01 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -5.37 Total: -124.57 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.05 Total: -20.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.86 kcal Total: -65.71 2.35 -63.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.901 kcal (2) G-P(sol) polarization free energy of solvation -65.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds