Wall clock time and date at job start Tue Mar 31 2020 19:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46735 * 2 1 4 4 H 1.08994 * 109.52720 * 305.08257 * 3 2 1 5 5 C 1.53191 * 109.49922 * 65.16519 * 3 2 1 6 6 N 1.46928 * 108.77570 * 174.57923 * 5 3 2 7 7 C 1.34778 * 120.62689 * 126.36794 * 6 5 3 8 8 O 1.21285 * 120.00435 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47077 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47487 * 179.97438 * 10 9 7 12 12 N 1.29025 * 124.91369 * 89.69028 * 11 10 9 13 13 C 1.31788 * 117.12249 * 179.81430 * 12 11 10 14 14 C 1.33639 * 114.49941 * 0.48204 * 13 12 11 15 15 S 1.70973 * 124.91710 * 270.00393 * 11 10 9 16 16 C 1.46926 * 118.74188 * 306.39608 * 6 5 3 17 17 C 1.53190 * 108.77633 * 53.60440 * 16 6 5 18 18 C 1.53040 * 109.31480 * 305.36629 * 17 16 6 19 19 H 1.09000 * 109.44982 * 301.35618 * 18 17 16 20 20 N 1.46492 * 109.46346 * 181.38918 * 18 17 16 21 21 C 1.36935 * 120.00376 * 84.93006 * 20 18 17 22 22 H 1.08003 * 119.99724 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99887 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46827 * 299.99641 * 1 2 3 31 31 H 1.08999 * 109.47106 * 59.99505 * 1 2 3 32 32 H 1.08993 * 109.46725 * 240.00495 * 2 1 3 33 33 H 1.09004 * 109.47180 * 120.00017 * 2 1 3 34 34 H 1.08993 * 109.58510 * 294.37075 * 5 3 2 35 35 H 1.09001 * 109.58698 * 54.65474 * 5 3 2 36 36 H 1.09000 * 109.47210 * 299.99477 * 9 7 6 37 37 H 1.08999 * 109.47561 * 60.00093 * 9 7 6 38 38 H 1.08998 * 109.47333 * 299.99930 * 10 9 7 39 39 H 1.09008 * 109.47385 * 59.99892 * 10 9 7 40 40 H 1.08001 * 122.74834 * 180.22757 * 13 12 11 41 41 H 1.07999 * 126.03727 * 179.71753 * 14 13 12 42 42 H 1.09001 * 109.58740 * 173.39201 * 16 6 5 43 43 H 1.09006 * 109.58199 * 293.67407 * 16 6 5 44 44 H 1.09001 * 109.49566 * 185.41415 * 17 16 6 45 45 H 1.08998 * 109.49566 * 65.31927 * 17 16 6 46 46 H 0.97009 * 119.99477 * 264.93591 * 20 18 17 47 47 H 0.97006 * 119.99732 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1268 1.3105 6 7 2.2452 3.4644 1.3508 7 6 1.4857 4.5565 1.5673 8 8 0.2897 4.4406 1.7317 9 6 2.1227 5.9217 1.6052 10 6 1.0477 6.9789 1.8654 11 6 1.6847 8.3442 1.9039 12 7 1.8489 9.1116 0.8798 13 6 2.4223 10.2795 1.0899 14 6 2.7698 10.5056 2.3604 15 16 2.3012 9.0971 3.3097 16 6 3.6953 3.5888 1.1498 17 6 4.0737 2.8882 -0.1589 18 6 3.5653 1.4451 -0.1258 19 1 4.0009 0.9263 0.7281 20 7 3.9542 0.7621 -1.3620 21 6 5.1923 0.1863 -1.4659 22 1 5.8819 0.2354 -0.6362 23 6 5.5609 -0.4604 -2.6375 24 7 6.7508 -1.0142 -2.7371 25 14 4.3679 -0.5459 -4.0723 26 1 4.5678 0.6328 -4.9533 27 1 2.9747 -0.5490 -3.5582 28 1 4.6126 -1.7895 -4.8462 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5533 2.2161 1.3586 35 1 1.9944 1.5364 2.1549 36 1 2.8646 5.9545 2.4031 37 1 2.6073 6.1233 0.6499 38 1 0.3055 6.9464 1.0679 39 1 0.5634 6.7773 2.8209 40 1 2.6007 10.9934 0.2994 41 1 3.2530 11.3945 2.7383 42 1 3.9671 4.6428 1.0918 43 1 4.2210 3.1211 1.9824 44 1 5.1578 2.8895 -0.2720 45 1 3.6192 3.4149 -0.9980 46 1 3.3346 0.7177 -2.1072 47 1 7.0086 -1.4658 -3.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037989766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:02 Heat of formation + Delta-G solvation = 10.655235 kcal Electronic energy + Delta-G solvation = -27000.798627 eV Core-core repulsion = 23310.248331 eV Total energy + Delta-G solvation = -3690.550296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38912 -39.87343 -38.02629 -34.88149 -34.29160 -33.79303 -31.80393 -30.23945 -29.91843 -28.91963 -26.67107 -24.95941 -24.02932 -23.30063 -22.33968 -20.85697 -20.25983 -19.97778 -18.98505 -18.39186 -17.58326 -17.02811 -16.05776 -15.86757 -15.75964 -15.02987 -14.77134 -14.49248 -14.30318 -13.96334 -13.80224 -13.75606 -13.44725 -13.23851 -13.04056 -12.72099 -12.61084 -12.48726 -12.33263 -11.91046 -11.84785 -11.79705 -11.47423 -11.39383 -11.05339 -11.02097 -10.80417 -10.43757 -10.34256 -10.22498 -9.96733 -9.84290 -9.75911 -9.72364 -9.60214 -9.21380 -8.95198 -8.56290 -7.30165 -5.80652 -3.16075 0.35511 1.01871 1.41185 2.49549 2.58861 3.00216 3.34990 3.38493 3.43714 3.80245 4.39856 4.56030 4.66219 4.75365 4.84910 4.85958 4.96448 5.03909 5.13648 5.14124 5.19781 5.24995 5.35875 5.46835 5.51106 5.53776 5.58547 5.59306 5.72337 5.77601 5.84728 5.91269 5.99921 6.01827 6.08116 6.22867 6.27042 6.32564 6.43696 6.53850 6.69406 6.78366 6.92559 7.41710 7.42461 7.94895 8.13809 8.38538 9.16771 9.89670 10.09543 11.37601 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002568 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.900438 B =10899.274170 C =11949.656058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.518 3.482 8 O -0.549 6.549 9 C -0.134 4.134 10 C -0.029 4.029 11 C 0.056 3.944 12 N -0.473 5.473 13 C 0.040 3.960 14 C -0.263 4.263 15 S 0.119 5.881 16 C 0.105 3.895 17 C -0.153 4.153 18 C 0.189 3.811 19 H 0.057 0.943 20 N -0.745 5.745 21 C -0.242 4.242 22 H 0.090 0.910 23 C 0.006 3.994 24 N -0.933 5.933 25 Si 0.882 3.118 26 H -0.285 1.285 27 H -0.276 1.276 28 H -0.292 1.292 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.067 0.933 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.176 0.824 41 H 0.177 0.823 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.059 0.941 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.991 19.217 13.483 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.306 3.694 8 O -0.427 6.427 9 C -0.176 4.176 10 C -0.070 4.070 11 C -0.222 4.222 12 N -0.187 5.187 13 C -0.111 4.111 14 C -0.403 4.403 15 S 0.373 5.627 16 C -0.018 4.018 17 C -0.194 4.194 18 C 0.079 3.921 19 H 0.075 0.925 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.190 4.190 24 N -0.581 5.581 25 Si 0.712 3.288 26 H -0.212 1.212 27 H -0.203 1.203 28 H -0.218 1.218 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.193 0.807 41 H 0.194 0.806 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.100 0.900 45 H 0.078 0.922 46 H 0.194 0.806 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.477 18.587 14.138 25.595 hybrid contribution -0.251 0.690 -1.966 2.099 sum -10.728 19.277 12.172 25.197 Atomic orbital electron populations 1.21853 0.96630 1.01166 1.01442 1.21466 0.94553 0.95701 1.03422 1.21831 0.97591 0.96298 0.97123 0.91277 1.21721 0.99524 0.81500 0.97560 1.48175 1.08655 1.06752 1.70229 1.20405 0.86855 0.85948 0.76231 1.90683 1.14813 1.86677 1.50565 1.21663 0.99135 0.91689 1.05080 1.20011 0.96996 0.84504 1.05482 1.27165 1.02378 1.01438 0.91249 1.66307 1.16245 1.04279 1.31888 1.21863 0.98790 0.94274 0.96159 1.27107 1.11652 1.04154 0.97344 1.84095 1.53848 1.10236 1.14525 1.21900 0.79286 1.01331 0.99255 1.22650 1.02677 0.98803 0.95234 1.20155 0.90698 0.90639 0.90630 0.92538 1.42776 1.16452 1.66304 1.13136 1.19040 0.90384 1.27342 1.00409 0.89212 1.24655 0.96413 1.00253 0.97691 1.69699 1.19320 1.41599 1.27498 0.86598 0.81172 0.77324 0.83691 1.21185 1.20251 1.21803 0.93060 0.92931 0.93090 0.90441 0.91950 0.89033 0.91468 0.88650 0.87997 0.87817 0.88725 0.80689 0.80567 0.90347 0.91122 0.90021 0.92217 0.80605 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.68 37.16 0.36 -1.61 16 2 C -0.11 -1.69 5.31 -26.73 -0.14 -1.84 16 3 C -0.11 -1.63 1.92 -90.50 -0.17 -1.81 16 4 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.59 5.33 -3.71 -0.02 1.57 16 6 N -0.61 -7.67 2.97 -172.77 -0.51 -8.19 16 7 C 0.52 6.58 7.70 -10.99 -0.08 6.50 16 8 O -0.55 -8.56 15.40 5.55 0.09 -8.48 16 9 C -0.13 -1.29 4.03 -27.89 -0.11 -1.40 16 10 C -0.03 -0.28 5.08 -27.88 -0.14 -0.42 16 11 C 0.06 0.54 6.64 -13.46 -0.09 0.45 16 12 N -0.47 -5.20 10.54 -11.86 -0.13 -5.33 16 13 C 0.04 0.35 11.35 -19.18 -0.22 0.13 16 14 C -0.26 -1.86 11.37 29.12 0.33 -1.53 16 15 S 0.12 0.90 23.18 -107.50 -2.49 -1.59 16 16 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 17 C -0.15 -2.34 5.66 -26.61 -0.15 -2.50 16 18 C 0.19 3.30 2.19 -67.89 -0.15 3.15 16 19 H 0.06 1.03 8.08 -51.93 -0.42 0.61 16 20 N -0.74 -16.46 4.13 -53.39 -0.22 -16.68 16 21 C -0.24 -6.46 10.41 -15.06 -0.16 -6.61 16 22 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 23 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 24 N -0.93 -28.63 13.97 55.49 0.78 -27.86 16 25 Si 0.88 21.70 27.73 -169.99 -4.71 16.99 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.39 6.52 56.52 0.37 -6.02 16 28 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.62 6.70 -51.92 -0.35 0.27 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.36 7.22 -51.93 -0.37 0.99 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.09 1.28 5.73 -51.93 -0.30 0.98 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.10 0.73 7.94 -51.93 -0.41 0.32 16 37 H 0.10 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.10 1.12 8.10 -51.93 -0.42 0.70 16 39 H 0.09 0.84 8.10 -51.92 -0.42 0.42 16 40 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.36 8.06 5.37 -40.82 -0.22 7.84 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 385.65 15.07 5.81 5.81 Total: -1.00 -32.42 385.65 -9.70 -42.12 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.44 Total: 7.83 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -0.87 Total: -4.63 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: -0.08 Total: -58.05 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.09 Total: -8.48 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.42 -9.70 -42.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.773 kcal (2) G-P(sol) polarization free energy of solvation -32.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds