Wall clock time and date at job start Tue Mar 31 2020 19:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52998 * 109.46735 * 2 1 4 4 H 1.08994 * 109.52720 * 305.08257 * 3 2 1 5 5 C 1.53191 * 109.49922 * 65.16519 * 3 2 1 6 6 N 1.46928 * 108.77570 * 174.57923 * 5 3 2 7 7 C 1.34778 * 120.62689 * 126.36794 * 6 5 3 8 8 O 1.21285 * 120.00435 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99841 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47077 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47487 * 179.97438 * 10 9 7 12 12 N 1.29025 * 124.91369 * 89.69028 * 11 10 9 13 13 C 1.31788 * 117.12249 * 179.81430 * 12 11 10 14 14 C 1.33639 * 114.49941 * 0.48204 * 13 12 11 15 15 S 1.70973 * 124.91710 * 270.00393 * 11 10 9 16 16 C 1.46926 * 118.74188 * 306.39608 * 6 5 3 17 17 C 1.53190 * 108.77633 * 53.60440 * 16 6 5 18 18 C 1.53040 * 109.31480 * 305.36629 * 17 16 6 19 19 H 1.09000 * 109.44982 * 301.35618 * 18 17 16 20 20 N 1.46492 * 109.46346 * 181.38918 * 18 17 16 21 21 C 1.36935 * 120.00376 * 84.93006 * 20 18 17 22 22 H 1.08003 * 119.99724 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00063 * 180.02562 * 21 20 18 24 24 N 1.31622 * 119.99887 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00212 * 359.97438 * 23 21 20 26 26 H 1.48506 * 109.47297 * 89.99941 * 25 23 21 27 27 H 1.48503 * 109.47261 * 330.00122 * 25 23 21 28 28 H 1.48500 * 109.47454 * 210.00115 * 25 23 21 29 29 H 1.08995 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46827 * 299.99641 * 1 2 3 31 31 H 1.08999 * 109.47106 * 59.99505 * 1 2 3 32 32 H 1.08993 * 109.46725 * 240.00495 * 2 1 3 33 33 H 1.09004 * 109.47180 * 120.00017 * 2 1 3 34 34 H 1.08993 * 109.58510 * 294.37075 * 5 3 2 35 35 H 1.09001 * 109.58698 * 54.65474 * 5 3 2 36 36 H 1.09000 * 109.47210 * 299.99477 * 9 7 6 37 37 H 1.08999 * 109.47561 * 60.00093 * 9 7 6 38 38 H 1.08998 * 109.47333 * 299.99930 * 10 9 7 39 39 H 1.09008 * 109.47385 * 59.99892 * 10 9 7 40 40 H 1.08001 * 122.74834 * 180.22757 * 13 12 11 41 41 H 1.07999 * 126.03727 * 179.71753 * 14 13 12 42 42 H 1.09001 * 109.58740 * 173.39201 * 16 6 5 43 43 H 1.09006 * 109.58199 * 293.67407 * 16 6 5 44 44 H 1.09001 * 109.49566 * 185.41415 * 17 16 6 45 45 H 1.08998 * 109.49566 * 65.31927 * 17 16 6 46 46 H 0.97009 * 119.99477 * 264.93591 * 20 18 17 47 47 H 0.97006 * 119.99732 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 -0.8406 5 6 1.6385 2.1268 1.3105 6 7 2.2452 3.4644 1.3508 7 6 1.4857 4.5565 1.5673 8 8 0.2897 4.4406 1.7317 9 6 2.1227 5.9217 1.6052 10 6 1.0477 6.9789 1.8654 11 6 1.6847 8.3442 1.9039 12 7 1.8489 9.1116 0.8798 13 6 2.4223 10.2795 1.0899 14 6 2.7698 10.5056 2.3604 15 16 2.3012 9.0971 3.3097 16 6 3.6953 3.5888 1.1498 17 6 4.0737 2.8882 -0.1589 18 6 3.5653 1.4451 -0.1258 19 1 4.0009 0.9263 0.7281 20 7 3.9542 0.7621 -1.3620 21 6 5.1923 0.1863 -1.4659 22 1 5.8819 0.2354 -0.6362 23 6 5.5609 -0.4604 -2.6375 24 7 6.7508 -1.0142 -2.7371 25 14 4.3679 -0.5459 -4.0723 26 1 4.5678 0.6328 -4.9533 27 1 2.9747 -0.5490 -3.5582 28 1 4.6126 -1.7895 -4.8462 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5533 2.2161 1.3586 35 1 1.9944 1.5364 2.1549 36 1 2.8646 5.9545 2.4031 37 1 2.6073 6.1233 0.6499 38 1 0.3055 6.9464 1.0679 39 1 0.5634 6.7773 2.8209 40 1 2.6007 10.9934 0.2994 41 1 3.2530 11.3945 2.7383 42 1 3.9671 4.6428 1.0918 43 1 4.2210 3.1211 1.9824 44 1 5.1578 2.8895 -0.2720 45 1 3.6192 3.4149 -0.9980 46 1 3.3346 0.7177 -2.1072 47 1 7.0086 -1.4658 -3.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037989766.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:02 Heat of formation + Delta-G solvation = -9.335579 kcal Electronic energy + Delta-G solvation = -27001.665494 eV Core-core repulsion = 23310.248331 eV Total energy + Delta-G solvation = -3691.417163 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.41640 -40.57130 -39.25984 -36.27973 -35.45045 -34.83069 -33.60444 -31.50997 -30.97711 -29.96323 -27.61563 -26.23256 -25.16595 -24.35690 -23.66550 -22.18298 -21.33015 -20.86588 -20.13593 -19.42567 -19.02504 -18.02388 -17.09273 -16.80010 -16.72299 -16.36954 -16.01088 -15.63022 -15.30965 -15.20494 -14.94254 -14.70952 -14.61705 -14.57402 -14.20556 -14.08919 -13.66504 -13.59211 -13.36335 -13.21420 -12.98622 -12.82658 -12.65089 -12.56118 -12.40917 -12.18699 -12.13054 -12.01521 -11.84996 -11.62968 -11.55542 -11.12418 -10.99041 -10.78256 -10.59116 -10.35290 -9.81416 -9.65908 -9.25906 -7.99781 -5.31146 -0.25044 0.43567 0.82104 1.37957 1.38844 1.46245 1.59987 1.83529 2.04630 2.49161 3.12233 3.32192 3.52079 3.59382 3.74018 3.92166 3.98075 4.03947 4.06245 4.19869 4.27291 4.31897 4.41901 4.44110 4.46302 4.54639 4.57767 4.62406 4.70210 4.80229 4.81835 4.84004 4.90549 4.98933 5.01164 5.05360 5.16445 5.24656 5.26641 5.35124 5.45825 5.50762 5.65072 5.81067 6.24692 6.41718 6.80738 7.10733 7.13812 7.88074 8.05933 9.21790 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.002568 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.900438 B =10899.274170 C =11949.656058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.059 0.941 5 C 0.125 3.875 6 N -0.607 5.607 7 C 0.517 3.483 8 O -0.579 6.579 9 C -0.126 4.126 10 C -0.024 4.024 11 C 0.034 3.966 12 N -0.505 5.505 13 C 0.017 3.983 14 C -0.253 4.253 15 S 0.151 5.849 16 C 0.114 3.886 17 C -0.146 4.146 18 C 0.182 3.818 19 H 0.049 0.951 20 N -0.748 5.748 21 C -0.215 4.215 22 H 0.063 0.937 23 C -0.063 4.063 24 N -0.984 5.984 25 Si 0.945 3.055 26 H -0.284 1.284 27 H -0.254 1.254 28 H -0.300 1.300 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.192 0.808 41 H 0.206 0.794 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.361 0.639 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.119 21.258 15.009 28.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.078 0.922 5 C 0.002 3.998 6 N -0.339 5.339 7 C 0.307 3.693 8 O -0.460 6.460 9 C -0.167 4.167 10 C -0.065 4.065 11 C -0.243 4.243 12 N -0.221 5.221 13 C -0.133 4.133 14 C -0.392 4.392 15 S 0.405 5.595 16 C -0.009 4.009 17 C -0.187 4.187 18 C 0.074 3.926 19 H 0.067 0.933 20 N -0.390 5.390 21 C -0.346 4.346 22 H 0.081 0.919 23 C -0.254 4.254 24 N -0.635 5.635 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.179 1.179 28 H -0.227 1.227 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.140 0.860 37 H 0.122 0.878 38 H 0.102 0.898 39 H 0.118 0.882 40 H 0.208 0.792 41 H 0.223 0.777 42 H 0.126 0.874 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.194 0.806 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.646 20.666 15.702 28.447 hybrid contribution 0.117 0.135 -2.307 2.314 sum -11.528 20.801 13.395 27.295 Atomic orbital electron populations 1.21792 0.94723 1.02004 1.01907 1.21422 0.96225 0.95199 1.02183 1.21692 0.95325 0.96672 0.98007 0.92210 1.21620 0.99507 0.82023 0.96668 1.48228 1.08993 1.06573 1.70113 1.20898 0.86439 0.86770 0.75195 1.90673 1.16235 1.87159 1.51892 1.21650 0.99407 0.89549 1.06116 1.19900 0.96623 0.84919 1.05036 1.27094 1.03440 1.01543 0.92240 1.66294 1.17144 1.05416 1.33220 1.22178 0.99508 0.94180 0.97470 1.27509 1.10224 1.04730 0.96730 1.83952 1.52757 1.09852 1.12959 1.21901 0.78787 1.02809 0.97404 1.22465 1.01398 0.97390 0.97407 1.20408 0.92582 0.91344 0.88277 0.93257 1.42807 1.14820 1.66552 1.14816 1.19004 0.91242 1.25410 0.98967 0.91935 1.25362 0.98125 1.01215 1.00688 1.69864 1.21643 1.43845 1.28181 0.85559 0.80168 0.76672 0.80258 1.21053 1.17903 1.22684 0.92086 0.91703 0.93355 0.93281 0.91549 0.89238 0.90167 0.86048 0.87798 0.89792 0.88188 0.79164 0.77748 0.87429 0.89575 0.91676 0.92872 0.80564 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.50 9.68 71.98 0.70 -2.81 16 2 C -0.11 -3.23 5.31 30.60 0.16 -3.07 16 3 C -0.10 -2.81 1.92 -10.71 -0.02 -2.83 16 4 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 5 C 0.12 3.08 5.33 86.36 0.46 3.54 16 6 N -0.61 -13.98 2.97 -818.90 -2.43 -16.41 16 7 C 0.52 12.10 7.70 87.66 0.67 12.77 16 8 O -0.58 -17.28 15.40 -3.05 -0.05 -17.32 16 9 C -0.13 -2.12 4.03 29.85 0.12 -2.00 16 10 C -0.02 -0.42 5.08 29.85 0.15 -0.27 16 11 C 0.03 0.60 6.64 88.52 0.59 1.19 16 12 N -0.51 -10.53 10.54 -191.44 -2.02 -12.55 16 13 C 0.02 0.26 11.35 83.66 0.95 1.21 16 14 C -0.25 -2.88 11.37 66.78 0.76 -2.12 16 15 S 0.15 1.90 23.18 -56.49 -1.31 0.59 16 16 C 0.11 2.36 6.34 86.36 0.55 2.91 16 17 C -0.15 -4.32 5.66 30.67 0.17 -4.14 16 18 C 0.18 6.24 2.19 45.02 0.10 6.34 16 19 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 20 N -0.75 -32.96 4.13 -322.82 -1.33 -34.30 16 21 C -0.22 -11.67 10.41 84.03 0.87 -10.80 16 22 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 23 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 24 N -0.98 -62.17 13.97 21.65 0.30 -61.87 16 25 Si 0.94 45.41 27.73 68.60 1.90 47.32 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 H -0.25 -11.12 6.52 99.48 0.65 -10.47 16 28 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.39 6.70 -2.38 -0.02 1.37 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.05 1.69 7.22 -2.39 -0.02 1.68 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.32 5.73 -2.39 -0.01 2.31 16 35 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.12 1.42 7.94 -2.39 -0.02 1.40 16 37 H 0.10 1.76 7.69 -2.39 -0.02 1.75 16 38 H 0.08 1.81 8.10 -2.39 -0.02 1.79 16 39 H 0.10 1.63 8.10 -2.38 -0.02 1.61 16 40 H 0.19 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.21 1.01 8.06 -2.91 -0.02 0.98 16 42 H 0.11 1.67 5.93 -2.39 -0.01 1.65 16 43 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 44 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.36 15.89 5.37 -92.70 -0.50 15.39 16 47 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -71.87 385.65 2.18 -69.69 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: 0.41 Total: 28.09 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.70 Total: -3.24 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -5.48 Total: -125.14 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.05 Total: -17.32 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.31 Total: 0.59 kcal Total: -71.87 2.18 -69.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037989766.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.358 kcal (2) G-P(sol) polarization free energy of solvation -71.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds