Wall clock time and date at job start Tue Mar 31 2020 19:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09009 * 109.52235 * 305.07693 * 3 2 1 5 5 C 1.53187 * 109.49977 * 65.16029 * 3 2 1 6 6 N 1.46927 * 108.77285 * 174.58721 * 5 3 2 7 7 C 1.34785 * 120.62951 * 126.37211 * 6 5 3 8 8 O 1.21284 * 119.99694 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00180 * 179.97438 * 7 6 5 10 10 C 1.52995 * 109.47140 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46945 * 180.02562 * 10 9 7 12 12 C 1.33638 * 122.75289 * 124.99789 * 11 10 9 13 13 S 1.76193 * 107.92806 * 179.97438 * 12 11 10 14 14 C 1.70974 * 90.28322 * 0.02562 * 13 12 11 15 15 N 1.29031 * 110.16329 * 359.73151 * 14 13 12 16 16 C 1.46924 * 118.74314 * 306.39038 * 6 5 3 17 17 C 1.53195 * 108.77197 * 53.60867 * 16 6 5 18 18 C 1.53036 * 109.31520 * 305.36360 * 17 16 6 19 19 H 1.08997 * 109.45248 * 301.35782 * 18 17 16 20 20 N 1.46500 * 109.46251 * 181.38357 * 18 17 16 21 21 C 1.36935 * 119.99795 * 84.93172 * 20 18 17 22 22 H 1.08006 * 119.99956 * 0.02562 * 21 20 18 23 23 C 1.38809 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31615 * 120.00002 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00116 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47261 * 239.99934 * 25 23 21 28 28 H 1.48500 * 109.47454 * 119.99927 * 25 23 21 29 29 H 1.09002 * 109.47133 * 60.00043 * 1 2 3 30 30 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46617 * 300.00192 * 1 2 3 32 32 H 1.08999 * 109.47327 * 240.00014 * 2 1 3 33 33 H 1.09002 * 109.47133 * 119.99957 * 2 1 3 34 34 H 1.08998 * 109.58963 * 294.37473 * 5 3 2 35 35 H 1.09003 * 109.58732 * 54.66165 * 5 3 2 36 36 H 1.09008 * 109.46905 * 299.99946 * 9 7 6 37 37 H 1.09000 * 109.46837 * 59.99631 * 9 7 6 38 38 H 1.08998 * 109.47173 * 299.99756 * 10 9 7 39 39 H 1.09000 * 109.47683 * 59.99995 * 10 9 7 40 40 H 1.08002 * 126.03247 * 0.02562 * 12 11 10 41 41 H 1.08004 * 124.91929 * 179.97438 * 14 13 12 42 42 H 1.08994 * 109.59020 * 173.40048 * 16 6 5 43 43 H 1.09003 * 109.58579 * 293.68537 * 16 6 5 44 44 H 1.09004 * 109.49353 * 185.41727 * 17 16 6 45 45 H 1.08998 * 109.49696 * 65.32066 * 17 16 6 46 46 H 0.96997 * 120.00022 * 264.93646 * 20 18 17 47 47 H 0.97004 * 120.00335 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8408 5 6 1.6385 2.1268 1.3104 6 7 2.2452 3.4644 1.3505 7 6 1.4857 4.5566 1.5671 8 8 0.2895 4.4408 1.7306 9 6 2.1228 5.9218 1.6059 10 6 1.0478 6.9790 1.8658 11 6 1.6849 8.3442 1.9041 12 6 1.2806 9.3527 1.1260 13 16 2.2849 10.7541 1.4892 14 6 3.1491 9.8445 2.6507 15 7 2.6828 8.6429 2.7112 16 6 3.6953 3.5889 1.1497 17 6 4.0736 2.8881 -0.1590 18 6 3.5653 1.4450 -0.1258 19 1 4.0009 0.9263 0.7282 20 7 3.9542 0.7619 -1.3621 21 6 5.1923 0.1862 -1.4659 22 1 5.8820 0.2354 -0.6361 23 6 5.5610 -0.4605 -2.6374 24 7 4.7207 -0.5200 -3.6487 25 14 7.2497 -1.2465 -2.7787 26 1 7.9988 -1.0410 -1.5130 27 1 7.9944 -0.6212 -3.9011 28 1 7.0987 -2.7015 -3.0345 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5533 2.2162 1.3585 35 1 1.9944 1.5365 2.1549 36 1 2.8642 5.9541 2.4043 37 1 2.6081 6.1235 0.6510 38 1 0.3061 6.9468 1.0678 39 1 0.5629 6.7771 2.8209 40 1 0.4793 9.3155 0.4029 41 1 3.9644 10.2221 3.2500 42 1 3.9671 4.6428 1.0917 43 1 4.2209 3.1212 1.9822 44 1 5.1578 2.8893 -0.2720 45 1 3.6193 3.4147 -0.9982 46 1 3.3346 0.7175 -2.1071 47 1 3.8439 -0.1116 -3.5755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037991923.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:45 Heat of formation + Delta-G solvation = 7.064940 kcal Electronic energy + Delta-G solvation = -27015.640852 eV Core-core repulsion = 23324.934870 eV Total energy + Delta-G solvation = -3690.705983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.46713 -39.91651 -37.91391 -34.86124 -34.09563 -33.58010 -31.82219 -30.34165 -29.40309 -28.56838 -26.13106 -25.02480 -23.97461 -23.64163 -22.69514 -20.93922 -19.95294 -19.81354 -18.84708 -18.27492 -17.29377 -17.06681 -16.18352 -15.94257 -15.58151 -14.99896 -14.83645 -14.29106 -14.05812 -13.92931 -13.65421 -13.59264 -13.48341 -13.45982 -13.23969 -12.98765 -12.65108 -12.33009 -12.12915 -11.77589 -11.72430 -11.66727 -11.37159 -11.23101 -10.91407 -10.73207 -10.58193 -10.30130 -10.24454 -10.06902 -10.00662 -9.86207 -9.81397 -9.70375 -9.18419 -9.14429 -8.91039 -8.48570 -7.04481 -6.11455 -3.11550 0.37982 1.05202 1.38441 2.44171 2.68571 3.10188 3.49969 3.56258 3.65381 3.87091 4.45127 4.64295 4.70723 4.85417 4.91347 4.96284 4.99801 5.16317 5.20822 5.23502 5.29664 5.36519 5.45786 5.53789 5.59134 5.63146 5.65914 5.69891 5.79336 5.84177 5.94744 5.97370 6.06655 6.08481 6.18958 6.28221 6.33090 6.37703 6.50166 6.60200 6.74743 6.85692 6.97788 7.37611 7.50500 7.79852 8.22759 8.74063 9.20840 10.07295 10.22803 11.36842 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.002464 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.747961 B =11359.232456 C =12814.009124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.119 3.881 6 N -0.606 5.606 7 C 0.515 3.485 8 O -0.552 6.552 9 C -0.131 4.131 10 C -0.027 4.027 11 C 0.068 3.932 12 C -0.252 4.252 13 S 0.111 5.889 14 C 0.024 3.976 15 N -0.465 5.465 16 C 0.107 3.893 17 C -0.151 4.151 18 C 0.189 3.811 19 H 0.049 0.951 20 N -0.732 5.732 21 C -0.329 4.329 22 H 0.064 0.936 23 C -0.045 4.045 24 N -0.945 5.945 25 Si 1.083 2.917 26 H -0.295 1.295 27 H -0.294 1.294 28 H -0.293 1.293 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.179 0.821 41 H 0.200 0.800 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.057 0.943 46 H 0.366 0.634 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 19.862 12.738 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.004 4.004 6 N -0.339 5.339 7 C 0.304 3.696 8 O -0.431 6.431 9 C -0.172 4.172 10 C -0.068 4.068 11 C -0.064 4.064 12 C -0.391 4.391 13 S 0.363 5.637 14 C -0.275 4.275 15 N -0.179 5.179 16 C -0.017 4.017 17 C -0.192 4.192 18 C 0.079 3.921 19 H 0.067 0.933 20 N -0.373 5.373 21 C -0.460 4.460 22 H 0.082 0.918 23 C -0.243 4.243 24 N -0.590 5.590 25 Si 0.915 3.085 26 H -0.222 1.222 27 H -0.221 1.221 28 H -0.221 1.221 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.196 0.804 41 H 0.216 0.784 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.200 0.800 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.147 19.590 12.030 23.558 hybrid contribution -1.257 0.186 0.700 1.451 sum -6.403 19.775 12.730 24.375 Atomic orbital electron populations 1.21843 0.96659 1.01113 1.01377 1.21436 0.94492 0.95697 1.03284 1.21798 0.97609 0.96220 0.96906 0.91402 1.21713 0.99459 0.81625 0.97556 1.48175 1.08587 1.06776 1.70338 1.20596 0.86858 0.86189 0.75979 1.90665 1.14929 1.86786 1.50680 1.21582 0.99616 0.91351 1.04608 1.19927 0.96263 0.86174 1.04402 1.20411 0.94373 0.97846 0.93735 1.26915 1.08032 0.95541 1.08623 1.84079 1.27555 1.16393 1.35691 1.28436 1.04483 0.92405 1.02163 1.66126 1.11438 1.17498 1.22849 1.21873 0.79435 1.01283 0.99074 1.22657 1.02240 0.99157 0.95153 1.20116 0.90684 0.90480 0.90836 0.93338 1.42426 1.16477 1.65700 1.12744 1.20070 0.92405 1.31933 1.01553 0.91759 1.25718 1.05811 1.00300 0.92431 1.70815 1.08373 1.47685 1.32158 0.83176 0.74323 0.76269 0.74766 1.22154 1.22108 1.22066 0.93033 0.93090 0.93071 0.90284 0.92339 0.89123 0.91737 0.88089 0.88965 0.89406 0.89283 0.80405 0.78353 0.90353 0.91412 0.90546 0.92388 0.80008 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.11 -1.73 1.92 -90.50 -0.17 -1.90 16 4 H 0.07 1.20 8.14 -51.92 -0.42 0.78 16 5 C 0.12 1.75 5.33 -3.71 -0.02 1.73 16 6 N -0.61 -8.54 2.97 -172.77 -0.51 -9.05 16 7 C 0.52 7.28 7.70 -10.98 -0.08 7.19 16 8 O -0.55 -9.33 15.39 5.55 0.09 -9.24 16 9 C -0.13 -1.45 3.95 -27.89 -0.11 -1.56 16 10 C -0.03 -0.29 5.00 -27.88 -0.14 -0.42 16 11 C 0.07 0.68 6.07 -84.23 -0.51 0.17 16 12 C -0.25 -2.08 11.07 29.12 0.32 -1.76 16 13 S 0.11 0.74 23.22 -107.50 -2.50 -1.76 16 14 C 0.02 0.18 12.23 51.59 0.63 0.81 16 15 N -0.47 -4.78 10.35 -11.90 -0.12 -4.90 16 16 C 0.11 1.40 6.34 -3.71 -0.02 1.37 16 17 C -0.15 -2.52 5.66 -26.61 -0.15 -2.67 16 18 C 0.19 3.57 2.19 -67.89 -0.15 3.42 16 19 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 20 N -0.73 -17.39 4.33 -53.38 -0.23 -17.62 16 21 C -0.33 -8.86 9.93 -15.06 -0.15 -9.01 16 22 H 0.06 1.72 7.83 -52.48 -0.41 1.31 16 23 C -0.04 -1.27 5.50 -17.43 -0.10 -1.37 16 24 N -0.94 -28.72 13.70 55.49 0.76 -27.96 16 25 Si 1.08 25.63 29.92 -169.99 -5.09 20.55 16 26 H -0.30 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 32 H 0.08 1.52 7.22 -51.93 -0.37 1.14 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.39 5.73 -51.93 -0.30 1.09 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.10 1.07 7.88 -51.92 -0.41 0.66 16 37 H 0.09 0.96 7.69 -51.93 -0.40 0.57 16 38 H 0.09 0.89 7.98 -51.93 -0.41 0.48 16 39 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 40 H 0.18 1.14 8.06 -52.49 -0.42 0.71 16 41 H 0.20 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.08 0.86 5.93 -51.93 -0.31 0.56 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.37 9.18 6.34 -40.82 -0.26 8.92 16 47 H 0.26 7.66 6.78 -40.82 -0.28 7.38 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -32.59 386.59 -9.58 -42.17 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -7.36 Total: 9.70 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: -0.44 Total: -7.70 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.11 Total: -59.54 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -5.09 Total: 20.55 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.50 Total: -1.76 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.59 -9.58 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037991923.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.236 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds