Wall clock time and date at job start Tue Mar 31 2020 19:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 H 1.09001 * 109.49844 * 55.06335 * 3 2 1 5 5 C 1.53196 * 109.49528 * 295.00092 * 3 2 1 6 6 N 1.46929 * 108.77486 * 185.37572 * 5 3 2 7 7 C 1.34766 * 120.63348 * 233.63046 * 6 5 3 8 8 O 1.21286 * 120.00250 * 0.02562 * 7 6 5 9 9 C 1.50699 * 120.00319 * 180.02562 * 7 6 5 10 10 C 1.53003 * 109.47385 * 179.97438 * 9 7 6 11 11 C 1.50696 * 109.46865 * 179.97438 * 10 9 7 12 12 C 1.33645 * 122.74783 * 124.73376 * 11 10 9 13 13 S 1.76199 * 107.92615 * 179.97438 * 12 11 10 14 14 C 1.70976 * 90.28189 * 0.27475 * 13 12 11 15 15 N 1.29031 * 110.16964 * 359.84394 * 14 13 12 16 16 C 1.46924 * 118.73409 * 53.61317 * 6 5 3 17 17 C 1.53191 * 108.77817 * 306.38734 * 16 6 5 18 18 C 1.53035 * 109.52733 * 175.14937 * 3 2 1 19 19 H 1.09004 * 109.45792 * 301.35459 * 18 3 2 20 20 N 1.46498 * 109.46284 * 61.30825 * 18 3 2 21 21 C 1.36935 * 120.00292 * 204.99969 * 20 18 3 22 22 H 1.08004 * 120.00061 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00109 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99938 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99975 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47304 * 59.99858 * 25 23 21 27 27 H 1.48502 * 109.47049 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47290 * 299.99922 * 25 23 21 29 29 H 1.08999 * 109.47235 * 59.99970 * 1 2 3 30 30 H 1.08999 * 109.47568 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47175 * 300.00264 * 1 2 3 32 32 H 1.09001 * 109.46960 * 240.00194 * 2 1 3 33 33 H 1.08999 * 109.47235 * 120.00030 * 2 1 3 34 34 H 1.08998 * 109.58804 * 305.17010 * 5 3 2 35 35 H 1.09003 * 109.58394 * 65.59587 * 5 3 2 36 36 H 1.09003 * 109.47289 * 300.00768 * 9 7 6 37 37 H 1.09005 * 109.46555 * 59.99877 * 9 7 6 38 38 H 1.08998 * 109.47327 * 299.99957 * 10 9 7 39 39 H 1.09001 * 109.46635 * 60.00528 * 10 9 7 40 40 H 1.07997 * 126.03795 * 0.04250 * 12 11 10 41 41 H 1.08004 * 124.91983 * 179.83551 * 14 13 12 42 42 H 1.08999 * 109.58511 * 186.60055 * 16 6 5 43 43 H 1.09005 * 109.70744 * 66.24599 * 16 6 5 44 44 H 1.09006 * 109.49784 * 294.68835 * 17 16 6 45 45 H 1.08997 * 109.52766 * 174.60233 * 17 16 6 46 46 H 0.97006 * 119.99685 * 25.00375 * 20 18 3 47 47 H 0.97003 * 119.99863 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6066 1.9817 0.8423 5 6 1.6351 2.1280 -1.3088 6 7 2.2409 3.4659 -1.3490 7 6 1.4805 4.5579 -1.5625 8 8 0.2840 4.4418 -1.7233 9 6 2.1169 5.9234 -1.6016 10 6 1.0408 6.9805 -1.8578 11 6 1.6771 8.3460 -1.8961 12 6 1.5405 9.1784 -2.9327 13 16 2.4364 10.6510 -2.5675 14 6 2.9123 9.9978 -1.0607 15 7 2.4192 8.8146 -0.9131 16 6 3.6915 3.5907 -1.1516 17 6 4.0734 2.8889 0.1554 18 6 3.5655 1.4456 0.1220 19 1 3.8574 0.9365 1.0406 20 7 4.1485 0.7495 -1.0277 21 6 5.3869 0.1743 -0.9240 22 1 5.9336 0.2333 0.0055 23 6 5.9395 -0.4848 -2.0136 24 7 5.2730 -0.5572 -3.1462 25 14 7.6285 -1.2701 -1.8718 26 1 7.6073 -2.3002 -0.8024 27 1 7.9885 -1.9065 -3.1644 28 1 8.6321 -0.2285 -1.5359 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.9912 1.5400 -2.1547 35 1 0.5496 2.2169 -1.3541 36 1 2.6045 6.1245 -0.6476 37 1 2.8563 5.9568 -2.4017 38 1 0.5537 6.7793 -2.8119 39 1 0.3011 6.9471 -1.0579 40 1 0.9791 8.9834 -3.8345 41 1 3.5355 10.5025 -0.3373 42 1 3.9629 4.6448 -1.0931 43 1 4.2173 3.1236 -1.9844 44 1 3.6208 3.4144 0.9964 45 1 5.1577 2.8904 0.2664 46 1 3.6573 0.6962 -1.8625 47 1 5.6590 -1.0181 -3.9075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037991924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:47 Heat of formation + Delta-G solvation = -8.487249 kcal Electronic energy + Delta-G solvation = -27368.720428 eV Core-core repulsion = 23677.340052 eV Total energy + Delta-G solvation = -3691.380376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.47356 -40.71849 -39.22752 -35.86578 -35.39007 -34.43692 -33.38944 -31.10742 -30.95364 -29.80854 -27.20135 -26.04258 -25.46940 -25.04861 -24.40791 -22.13615 -20.77628 -20.47007 -19.57437 -19.23283 -18.88723 -17.98469 -17.05358 -16.95606 -16.55613 -16.33838 -15.92887 -15.65643 -15.47463 -15.03875 -14.85215 -14.76373 -14.53167 -14.22078 -14.15840 -13.98279 -13.86437 -13.53160 -13.24113 -13.00043 -12.80595 -12.73961 -12.64571 -12.45405 -12.35165 -12.16914 -12.10879 -11.94766 -11.82538 -11.56647 -11.43964 -11.11020 -10.89706 -10.70792 -10.57821 -10.38043 -9.72073 -9.56760 -8.90686 -7.87346 -5.13425 -0.17183 0.53314 0.82748 1.50237 1.51389 1.57166 1.62948 1.79566 2.09671 2.60734 3.28865 3.46099 3.55873 3.82352 3.88013 3.96902 4.05243 4.10582 4.12475 4.22266 4.31727 4.37781 4.45907 4.46657 4.48348 4.57505 4.61329 4.62600 4.72898 4.86153 4.90498 4.97388 5.01033 5.04365 5.06596 5.17888 5.23474 5.25168 5.27283 5.32342 5.41608 5.52546 5.61472 5.68673 6.34291 6.48752 6.80803 7.16490 7.41847 8.18305 8.42144 9.35764 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012648 B = 0.002734 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2213.270507 B =10237.238103 C =11696.120089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.083 0.917 5 C 0.125 3.875 6 N -0.603 5.603 7 C 0.512 3.488 8 O -0.584 6.584 9 C -0.119 4.119 10 C -0.021 4.021 11 C 0.049 3.951 12 C -0.261 4.261 13 S 0.154 5.846 14 C 0.018 3.982 15 N -0.498 5.498 16 C 0.120 3.880 17 C -0.142 4.142 18 C 0.172 3.828 19 H 0.046 0.954 20 N -0.724 5.724 21 C -0.226 4.226 22 H 0.075 0.925 23 C -0.073 4.073 24 N -0.969 5.969 25 Si 0.963 3.037 26 H -0.283 1.283 27 H -0.302 1.302 28 H -0.279 1.279 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.062 0.938 34 H 0.046 0.954 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.192 0.808 41 H 0.227 0.773 42 H 0.101 0.899 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.373 0.627 47 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 21.654 4.441 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.111 4.111 4 H 0.101 0.899 5 C 0.002 3.998 6 N -0.334 5.334 7 C 0.302 3.698 8 O -0.465 6.465 9 C -0.159 4.159 10 C -0.061 4.061 11 C -0.082 4.082 12 C -0.401 4.401 13 S 0.407 5.593 14 C -0.279 4.279 15 N -0.213 5.213 16 C -0.002 4.002 17 C -0.183 4.183 18 C 0.063 3.937 19 H 0.064 0.936 20 N -0.365 5.365 21 C -0.358 4.358 22 H 0.092 0.908 23 C -0.265 4.265 24 N -0.621 5.621 25 Si 0.794 3.206 26 H -0.209 1.209 27 H -0.229 1.229 28 H -0.205 1.205 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.210 0.790 41 H 0.243 0.757 42 H 0.119 0.881 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.207 0.793 47 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.162 22.208 4.431 23.751 hybrid contribution 0.641 -1.782 -0.549 1.972 sum -6.520 20.425 3.882 21.790 Atomic orbital electron populations 1.21780 0.94743 1.01915 1.01854 1.21340 0.96081 0.95241 1.01706 1.21648 0.95798 0.96416 0.97271 0.89857 1.21491 0.98589 0.82208 0.97514 1.48184 1.08855 1.06423 1.69920 1.21122 0.86511 0.87032 0.75124 1.90634 1.16279 1.87335 1.52287 1.21524 0.99484 0.89413 1.05487 1.19797 0.95974 0.86539 1.03827 1.20321 0.99190 0.98620 0.90111 1.27182 1.09509 0.97806 1.05554 1.83901 1.43230 1.17225 1.14984 1.28947 1.03525 0.94000 1.01467 1.66120 1.11756 1.13263 1.30147 1.21644 0.78601 1.01576 0.98383 1.22394 1.01394 0.97738 0.96765 1.20442 0.91077 0.91484 0.90655 0.93578 1.42575 1.18174 1.64350 1.11399 1.19527 0.94276 1.25302 0.96721 0.90756 1.25380 1.01805 1.03255 0.96095 1.69800 1.39585 1.49840 1.02830 0.85356 0.80979 0.78416 0.75858 1.20939 1.22910 1.20525 0.93218 0.92150 0.91855 0.93753 0.91976 0.93562 0.89687 0.87411 0.88174 0.89459 0.90623 0.79035 0.75687 0.88066 0.92970 0.90709 0.91476 0.79333 0.94411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.67 71.98 0.70 -3.19 16 2 C -0.11 -3.41 5.19 30.59 0.16 -3.25 16 3 C -0.09 -2.96 2.14 -10.72 -0.02 -2.98 16 4 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 5 C 0.12 4.30 5.03 86.36 0.43 4.74 16 6 N -0.60 -19.26 2.97 -818.90 -2.43 -21.70 16 7 C 0.51 15.77 7.70 87.66 0.67 16.45 16 8 O -0.58 -21.26 15.39 -3.05 -0.05 -21.31 16 9 C -0.12 -2.81 3.95 29.85 0.12 -2.69 16 10 C -0.02 -0.47 5.00 29.85 0.15 -0.32 16 11 C 0.05 0.99 6.08 41.52 0.25 1.24 16 12 C -0.26 -4.17 11.07 66.78 0.74 -3.43 16 13 S 0.15 1.83 23.22 -56.49 -1.31 0.52 16 14 C 0.02 0.26 12.23 130.65 1.60 1.85 16 15 N -0.50 -10.24 10.34 -191.54 -1.98 -12.22 16 16 C 0.12 3.72 6.08 86.36 0.53 4.25 16 17 C -0.14 -4.49 5.78 30.67 0.18 -4.31 16 18 C 0.17 6.31 2.53 45.02 0.11 6.42 16 19 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 20 N -0.72 -33.65 3.72 -322.82 -1.20 -34.85 16 21 C -0.23 -11.81 9.93 84.03 0.83 -10.97 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 23 C -0.07 -4.05 5.50 84.86 0.47 -3.59 16 24 N -0.97 -57.82 13.06 21.65 0.28 -57.54 16 25 Si 0.96 45.21 29.55 68.60 2.03 47.23 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 29 H 0.05 1.36 6.70 -2.39 -0.02 1.35 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.72 7.70 -2.39 -0.02 1.70 16 33 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.85 6.64 -2.39 -0.02 1.83 16 35 H 0.08 2.95 5.72 -2.39 -0.01 2.93 16 36 H 0.11 2.43 7.62 -2.39 -0.02 2.41 16 37 H 0.10 2.19 7.94 -2.38 -0.02 2.18 16 38 H 0.09 1.89 7.99 -2.39 -0.02 1.87 16 39 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 40 H 0.19 2.31 8.06 -2.91 -0.02 2.29 16 41 H 0.23 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.10 2.50 5.93 -2.39 -0.01 2.49 16 43 H 0.05 1.98 7.74 -2.38 -0.02 1.96 16 44 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.37 19.06 5.94 -92.70 -0.55 18.51 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -66.65 384.66 2.67 -63.98 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.42 Total: 35.67 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 6.91 Total: 0.22 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.33 Total: -126.31 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.05 Total: -21.31 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -1.31 Total: 0.52 kcal Total: -66.65 2.67 -63.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037991924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.489 kcal (2) G-P(sol) polarization free energy of solvation -66.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds