Wall clock time and date at job start Tue Mar 31 2020 21:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35721 * 117.00018 * 2 1 4 4 C 1.39361 * 120.35924 * 359.97438 * 3 2 1 5 5 N 1.31298 * 120.88092 * 180.02562 * 4 3 2 6 6 C 1.32880 * 121.71991 * 0.02562 * 5 4 3 7 7 C 1.47753 * 119.69080 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00486 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00099 * 0.02562 * 7 6 5 10 10 C 1.46500 * 120.00434 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.49394 * 325.06853 * 10 9 7 12 12 C 1.53038 * 109.49606 * 205.00122 * 10 9 7 13 13 C 1.53045 * 109.53296 * 178.68632 * 12 10 9 14 14 C 1.53186 * 109.31655 * 61.36386 * 13 12 10 15 15 H 1.09007 * 109.58589 * 65.29547 * 14 13 12 16 16 C 1.52992 * 109.58991 * 185.57651 * 14 13 12 17 17 N 1.46925 * 108.77711 * 305.36769 * 14 13 12 18 18 C 1.36933 * 120.62957 * 233.63215 * 17 14 13 19 19 H 1.08006 * 120.00469 * 29.53229 * 18 17 14 20 20 C 1.38822 * 120.00095 * 209.53881 * 18 17 14 21 21 N 1.31617 * 119.99829 * 16.10495 * 20 18 17 22 22 Si 1.86791 * 120.00098 * 196.10813 * 20 18 17 23 23 H 1.48501 * 109.47260 * 94.01689 * 22 20 18 24 24 H 1.48499 * 109.47197 * 214.01720 * 22 20 18 25 25 H 1.48502 * 109.47389 * 334.01831 * 22 20 18 26 26 C 1.46925 * 118.73844 * 53.60410 * 17 14 13 27 27 C 1.39725 * 120.62617 * 0.02562 * 6 5 4 28 28 F 1.35095 * 120.46702 * 179.70677 * 27 6 5 29 29 C 1.38690 * 119.06606 * 359.97438 * 27 6 5 30 30 H 1.09002 * 109.47492 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47267 * 300.00521 * 1 2 3 32 32 H 1.09005 * 109.47289 * 60.00114 * 1 2 3 33 33 H 1.07998 * 119.56327 * 0.02562 * 4 3 2 34 34 H 0.97004 * 119.99618 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.46260 * 298.70013 * 12 10 9 36 36 H 1.08999 * 109.46400 * 58.68166 * 12 10 9 37 37 H 1.09005 * 109.49507 * 181.31955 * 13 12 10 38 38 H 1.09004 * 109.49593 * 301.41185 * 13 12 10 39 39 H 1.09003 * 109.47484 * 60.00013 * 16 14 13 40 40 H 1.09004 * 109.47842 * 180.02562 * 16 14 13 41 41 H 1.09005 * 109.47147 * 299.99871 * 16 14 13 42 42 H 0.96994 * 120.00310 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.58606 * 186.60660 * 26 17 14 44 44 H 1.08996 * 109.59235 * 66.18360 * 26 17 14 45 45 H 1.08003 * 120.78833 * 179.97438 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 -0.0010 6 6 3.2021 3.6794 -0.0016 7 6 3.8136 5.0245 -0.0027 8 8 5.0236 5.1422 -0.0037 9 7 3.0300 6.1210 -0.0027 10 6 3.6363 7.4547 -0.0032 11 1 4.5540 7.4374 0.5848 12 6 2.6577 8.4609 0.6066 13 6 3.3027 9.8485 0.6365 14 6 3.6208 10.2903 -0.7954 15 1 2.6928 10.4202 -1.3524 16 6 4.3902 11.6123 -0.7653 17 7 4.4434 9.2562 -1.4377 18 6 5.6399 9.5786 -2.0203 19 1 6.2190 10.4079 -1.6415 20 6 6.1087 8.8397 -3.0980 21 7 5.2900 8.0503 -3.7605 22 14 7.9013 8.9657 -3.6077 23 1 8.6790 7.8821 -2.9548 24 1 8.0071 8.8311 -5.0828 25 1 8.4431 10.2840 -3.1909 26 6 3.9581 7.8694 -1.4424 27 6 4.0208 2.5471 -0.0021 28 9 5.3657 2.6743 -0.0086 29 6 3.4332 1.2909 -0.0016 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 0.2150 2.3248 -0.0005 34 1 2.0645 6.0272 -0.0015 35 1 1.7499 8.4954 0.0043 36 1 2.4080 8.1548 1.6225 37 1 2.6141 10.5600 1.0923 38 1 4.2237 9.8090 1.2181 39 1 5.3200 11.4792 -0.2123 40 1 4.6152 11.9252 -1.7849 41 1 3.7832 12.3749 -0.2773 42 1 5.6176 7.5337 -4.5133 43 1 4.7289 7.2139 -1.8479 44 1 3.0579 7.7993 -2.0529 45 1 4.0394 0.3970 -0.0024 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071554831.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:47 Heat of formation + Delta-G solvation = -54.445215 kcal Electronic energy + Delta-G solvation = -29688.426686 eV Core-core repulsion = 25428.840246 eV Total energy + Delta-G solvation = -4259.586439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.01922 -41.04809 -39.48556 -38.29568 -37.37526 -34.37624 -32.83691 -32.60479 -31.17177 -30.20139 -29.73394 -28.05623 -26.08717 -25.10866 -24.50540 -23.31473 -22.21498 -21.09149 -20.09593 -19.31065 -18.87281 -18.16798 -17.65001 -16.57150 -16.44719 -16.32519 -15.75023 -15.48015 -15.30843 -15.07360 -14.68457 -14.29216 -13.86964 -13.73931 -13.57944 -13.50957 -13.32762 -13.24196 -12.89343 -12.65401 -12.49880 -12.32562 -11.97227 -11.80302 -11.40060 -11.06913 -10.83017 -10.66830 -10.49601 -10.34212 -10.25263 -10.18773 -9.90943 -9.82649 -9.74344 -9.39351 -9.39162 -8.88003 -8.44149 -8.35119 -6.55028 -5.68017 -3.12406 0.36342 0.68276 2.49765 2.76246 3.33282 3.48157 3.54452 3.55866 3.71015 3.88935 3.95929 4.12583 4.48402 4.58313 4.62522 4.64873 4.68080 4.98400 5.02950 5.33496 5.40966 5.43281 5.48555 5.57720 5.64036 5.75549 6.02121 6.05164 6.17401 6.32769 6.35960 6.44605 6.50368 6.55664 6.60821 6.68582 6.80210 6.98551 7.09829 7.18033 7.28417 7.39432 7.79632 7.91829 7.98913 8.55686 8.62026 9.30570 9.95117 10.50712 11.40101 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014245 B = 0.003215 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.065316 B = 8707.480153 C = 9918.172337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.304 6.304 3 C 0.125 3.875 4 C 0.007 3.993 5 N -0.392 5.392 6 C 0.018 3.982 7 C 0.566 3.434 8 O -0.515 6.515 9 N -0.697 5.697 10 C 0.115 3.885 11 H 0.083 0.917 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.165 3.835 15 H 0.025 0.975 16 C -0.136 4.136 17 N -0.583 5.583 18 C -0.253 4.253 19 H 0.070 0.930 20 C 0.007 3.993 21 N -0.899 5.899 22 Si 0.899 3.101 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.169 3.831 27 C 0.155 3.845 28 F -0.095 7.095 29 C -0.161 4.161 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.172 0.828 34 H 0.402 0.598 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.252 0.748 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.322 -13.730 10.013 21.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.215 6.215 3 C 0.076 3.924 4 C -0.155 4.155 5 N -0.103 5.103 6 C -0.122 4.122 7 C 0.349 3.651 8 O -0.389 6.389 9 N -0.348 5.348 10 C 0.010 3.990 11 H 0.102 0.898 12 C -0.154 4.154 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.043 0.957 16 C -0.194 4.194 17 N -0.306 5.306 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.193 4.193 21 N -0.543 5.543 22 Si 0.729 3.271 23 H -0.213 1.213 24 H -0.219 1.219 25 H -0.204 1.204 26 C 0.042 3.958 27 C 0.132 3.868 28 F -0.073 7.073 29 C -0.188 4.188 30 H 0.125 0.875 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.189 0.811 34 H 0.236 0.764 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.062 0.938 43 H 0.111 0.889 44 H 0.036 0.964 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -12.732 -13.112 9.846 20.760 hybrid contribution 0.779 -0.933 -0.403 1.280 sum -11.953 -14.045 9.443 20.720 Atomic orbital electron populations 1.23252 0.77090 1.04898 1.02174 1.86058 1.22355 1.25554 1.87524 1.19980 0.92044 0.86044 0.94306 1.23038 1.00997 0.86489 1.04978 1.67498 1.09479 1.26723 1.06630 1.21505 0.89223 0.94577 1.06929 1.17443 0.86568 0.82934 0.78189 1.90910 1.13007 1.85894 1.49126 1.45862 1.10098 1.05733 1.73072 1.22067 0.96001 0.78765 1.02124 0.89842 1.21672 0.98414 0.95813 0.99485 1.22049 0.99894 0.94883 0.99736 1.20488 0.93536 0.89463 0.90691 0.95749 1.21799 0.99716 0.95873 1.01969 1.44018 1.20636 1.01027 1.64936 1.19148 0.95022 1.15621 1.08460 0.91192 1.25082 0.98014 1.00403 0.95752 1.70011 1.33103 1.30765 1.20435 0.86323 0.85511 0.77902 0.77315 1.21315 1.21892 1.20404 1.21067 0.98940 0.86869 0.88952 1.18271 0.78956 0.92727 0.96828 1.91670 1.27052 1.96393 1.92169 1.20819 0.92885 0.97736 1.07333 0.87483 0.91849 0.91768 0.81138 0.76355 0.92172 0.93012 0.92664 0.92052 0.92776 0.92036 0.94384 0.93782 0.88908 0.96376 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.41 10.50 -18.87 -0.20 -2.60 16 3 C 0.13 1.22 6.72 -38.86 -0.26 0.96 16 4 C 0.01 0.07 10.21 -17.36 -0.18 -0.11 16 5 N -0.39 -5.14 9.52 -9.63 -0.09 -5.23 16 6 C 0.02 0.28 6.75 -82.97 -0.56 -0.28 16 7 C 0.57 11.01 7.76 -12.37 -0.10 10.91 16 8 O -0.51 -12.13 14.97 5.30 0.08 -12.05 16 9 N -0.70 -12.53 5.07 -54.66 -0.28 -12.81 16 10 C 0.12 2.34 2.61 -67.81 -0.18 2.16 16 11 H 0.08 1.90 7.58 -51.93 -0.39 1.50 16 12 C -0.12 -1.94 5.35 -26.69 -0.14 -2.08 16 13 C -0.13 -2.18 5.37 -26.61 -0.14 -2.33 16 14 C 0.16 3.44 3.50 -67.61 -0.24 3.20 16 15 H 0.02 0.53 8.14 -51.92 -0.42 0.11 16 16 C -0.14 -2.60 7.95 37.15 0.30 -2.30 16 17 N -0.58 -14.80 2.99 -164.78 -0.49 -15.29 16 18 C -0.25 -7.05 8.58 -15.06 -0.13 -7.18 16 19 H 0.07 1.90 6.22 -52.48 -0.33 1.57 16 20 C 0.01 0.19 4.92 -17.43 -0.09 0.10 16 21 N -0.90 -27.20 11.25 55.49 0.62 -26.58 16 22 Si 0.90 22.85 29.58 -169.99 -5.03 17.82 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.17 4.20 4.87 -3.71 -0.02 4.19 16 27 C 0.16 2.29 7.31 -38.86 -0.28 2.00 16 28 F -0.10 -1.62 15.54 2.25 0.03 -1.59 16 29 C -0.16 -1.79 10.10 -39.11 -0.40 -2.19 16 30 H 0.11 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 32 H 0.06 0.19 7.67 -51.93 -0.40 -0.20 16 33 H 0.17 1.03 6.31 -52.49 -0.33 0.70 16 34 H 0.40 6.14 7.92 -40.82 -0.32 5.81 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 40 H 0.06 1.27 7.67 -51.93 -0.40 0.87 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.09 2.73 6.14 -51.93 -0.32 2.41 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.16 1.43 8.06 -52.48 -0.42 1.00 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -34.43 368.63 -7.42 -41.86 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -6.21 Total: 2.78 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: -1.42 Total: 8.14 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.24 Total: -59.91 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.12 Total: -14.66 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.03 Total: -1.59 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.03 Total: 17.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.43 -7.42 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071554831.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.588 kcal (2) G-P(sol) polarization free energy of solvation -34.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds