Wall clock time and date at job start Tue Mar 31 2020 21:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35723 * 117.00186 * 2 1 4 4 C 1.39359 * 120.36009 * 359.97438 * 3 2 1 5 5 N 1.31284 * 120.88402 * 179.97438 * 4 3 2 6 6 C 1.32885 * 121.71785 * 0.02562 * 5 4 3 7 7 C 1.47758 * 119.68847 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00318 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00013 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00144 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50163 * 35.06285 * 10 9 7 12 12 C 1.53110 * 109.51520 * 155.13095 * 10 9 7 13 13 C 1.53038 * 109.50242 * 58.63231 * 12 10 9 14 14 C 1.53195 * 109.34267 * 61.34830 * 13 12 10 15 15 H 1.08991 * 109.58843 * 65.13325 * 14 13 12 16 16 C 1.53001 * 109.58793 * 185.56366 * 14 13 12 17 17 N 1.46930 * 108.77212 * 305.34776 * 14 13 12 18 18 C 1.36935 * 120.62926 * 233.58692 * 17 14 13 19 19 H 1.08000 * 120.00188 * 29.05289 * 18 17 14 20 20 C 1.38818 * 120.00092 * 209.05252 * 18 17 14 21 21 N 1.31620 * 119.99342 * 15.06278 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 195.06135 * 20 18 17 23 23 H 1.48495 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46779 * 120.00451 * 22 20 18 25 25 H 1.48504 * 109.47072 * 239.99843 * 22 20 18 26 26 C 1.46923 * 118.73837 * 53.60789 * 17 14 13 27 27 C 1.39718 * 120.62563 * 0.25900 * 6 5 4 28 28 F 1.35103 * 120.46526 * 179.74398 * 27 6 5 29 29 C 1.38685 * 119.06732 * 359.46745 * 27 6 5 30 30 H 1.09003 * 109.47444 * 300.00118 * 1 2 3 31 31 H 1.09007 * 109.47108 * 60.00252 * 1 2 3 32 32 H 1.09006 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.55324 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00290 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.50572 * 298.60464 * 12 10 9 36 36 H 1.09000 * 109.45009 * 178.62327 * 12 10 9 37 37 H 1.09000 * 109.49955 * 301.37868 * 13 12 10 38 38 H 1.08999 * 109.49853 * 181.31607 * 13 12 10 39 39 H 1.09000 * 109.47179 * 59.99206 * 16 14 13 40 40 H 1.08994 * 109.47056 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47050 * 299.99666 * 16 14 13 42 42 H 0.97004 * 119.99493 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58731 * 66.18021 * 26 17 14 44 44 H 1.08997 * 109.58692 * 186.46145 * 26 17 14 45 45 H 1.08006 * 120.78736 * 180.26242 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 0.0000 6 6 3.2022 3.6793 0.0005 7 6 3.8137 5.0244 0.0005 8 8 5.0237 5.1421 0.0005 9 7 3.0301 6.1209 -0.0006 10 6 3.6364 7.4546 -0.0012 11 1 4.5528 7.4374 -0.5910 12 6 2.6564 8.4616 -0.6092 13 6 1.3573 8.4626 0.1997 14 6 1.6570 8.8884 1.6405 15 1 2.0021 9.9221 1.6517 16 6 0.3897 8.7584 2.4879 17 7 2.7048 8.0133 2.1838 18 6 2.5134 7.3455 3.3639 19 1 1.5169 7.0602 3.6675 20 6 3.6001 7.0350 4.1699 21 7 4.7594 7.6242 3.9670 22 14 3.4170 5.7813 5.5424 23 1 2.0235 5.2685 5.5618 24 1 4.3566 4.6546 5.3122 25 1 3.7253 6.4246 6.8449 26 6 3.9619 7.8688 1.4373 27 6 4.0207 2.5471 -0.0049 28 9 5.3658 2.6742 -0.0096 29 6 3.4332 1.2908 0.0004 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2151 2.3247 -0.0014 34 1 2.0646 6.0271 -0.0010 35 1 2.4416 8.1831 -1.6408 36 1 3.0989 9.4575 -0.5868 37 1 0.9271 7.4611 0.1983 38 1 0.6511 9.1625 -0.2470 39 1 0.0515 7.7222 2.4791 40 1 0.6050 9.0621 3.5123 41 1 -0.3902 9.3986 2.0758 42 1 5.5189 7.4070 4.5300 43 1 4.4951 8.8196 1.4320 44 1 4.5810 7.1054 1.9084 45 1 4.0395 0.3970 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071554832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:50 Heat of formation + Delta-G solvation = -52.104631 kcal Electronic energy + Delta-G solvation = -30647.537343 eV Core-core repulsion = 26388.052399 eV Total energy + Delta-G solvation = -4259.484944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -48.90487 -40.91357 -39.44390 -38.26115 -37.26838 -34.07899 -32.75789 -32.48454 -31.09549 -30.10310 -29.74765 -27.93527 -26.20449 -25.03839 -24.54402 -23.26424 -22.11412 -21.15280 -20.30580 -18.78216 -18.67867 -18.12447 -17.65387 -16.44329 -16.32135 -16.24334 -15.64462 -15.39799 -15.14148 -14.97680 -14.61908 -14.19344 -13.90920 -13.80455 -13.45199 -13.39565 -13.29134 -13.06083 -12.75348 -12.70709 -12.44610 -12.36984 -11.93241 -11.74977 -11.17919 -11.11738 -10.91489 -10.81711 -10.67684 -10.32368 -10.26577 -10.11008 -9.90350 -9.70295 -9.53587 -9.40149 -9.32919 -8.74575 -8.39464 -8.26070 -6.53925 -5.68830 -3.12321 0.50748 0.82399 2.61549 2.91507 3.41050 3.47790 3.50139 3.51148 3.89135 4.03229 4.11890 4.26005 4.55081 4.61496 4.74033 4.75676 4.81651 5.09232 5.15460 5.37081 5.41933 5.45417 5.52370 5.57357 5.65705 5.67470 6.07108 6.16507 6.17834 6.21801 6.38513 6.40324 6.49560 6.57852 6.67297 6.72550 6.75168 6.96022 7.09686 7.18546 7.41601 7.48315 7.77126 7.90034 8.17548 8.55388 8.78702 9.29801 9.94415 10.50264 11.39107 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.004437 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.946928 B = 6309.466401 C = 6751.426927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.305 6.305 3 C 0.123 3.877 4 C 0.009 3.991 5 N -0.388 5.388 6 C 0.022 3.978 7 C 0.568 3.432 8 O -0.530 6.530 9 N -0.676 5.676 10 C 0.116 3.884 11 H 0.077 0.923 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.025 0.975 16 C -0.135 4.135 17 N -0.583 5.583 18 C -0.246 4.246 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.899 5.899 22 Si 0.892 3.108 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.161 3.839 27 C 0.152 3.848 28 F -0.097 7.097 29 C -0.162 4.162 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.171 0.829 34 H 0.405 0.595 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.098 0.902 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.223 -11.087 -11.498 18.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.216 6.216 3 C 0.074 3.926 4 C -0.154 4.154 5 N -0.100 5.100 6 C -0.117 4.117 7 C 0.351 3.649 8 O -0.407 6.407 9 N -0.326 5.326 10 C 0.011 3.989 11 H 0.095 0.905 12 C -0.156 4.156 13 C -0.171 4.171 14 C 0.059 3.941 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.306 5.306 18 C -0.375 4.375 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.723 3.277 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.034 3.966 27 C 0.129 3.871 28 F -0.075 7.075 29 C -0.188 4.188 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.188 0.812 34 H 0.241 0.759 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.044 0.956 44 H 0.116 0.884 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.565 -10.401 -11.382 18.145 hybrid contribution -0.010 -1.462 0.889 1.711 sum -9.575 -11.863 -10.494 18.508 Atomic orbital electron populations 1.23241 0.77180 1.04783 1.02198 1.86043 1.22292 1.25618 1.87642 1.19973 0.92042 0.86013 0.94585 1.23036 1.00986 0.86504 1.04848 1.67512 1.09514 1.26610 1.06340 1.21508 0.89202 0.94642 1.06390 1.17366 0.86443 0.83004 0.78047 1.90839 1.13144 1.86090 1.50606 1.45642 1.10344 1.04998 1.71612 1.21877 0.95462 0.80432 1.01178 0.90489 1.21693 0.96661 0.99281 0.97939 1.22078 0.96169 1.00814 0.98043 1.20455 0.89906 0.93165 0.90542 0.95784 1.21791 0.96164 1.00688 1.00641 1.44045 1.13507 1.50561 1.22462 1.19112 0.93398 1.28995 0.96028 0.91451 1.25031 0.96939 0.99782 0.97614 1.69985 1.01463 1.42364 1.40513 0.86375 0.77415 0.81714 0.82225 1.20411 1.21713 1.21742 1.21202 0.88711 1.00120 0.86519 1.18266 0.78883 0.92771 0.97177 1.91651 1.27138 1.96413 1.92280 1.20787 0.92866 0.97673 1.07502 0.91748 0.91898 0.87567 0.81224 0.75860 0.92985 0.91039 0.92463 0.92885 0.92897 0.92135 0.94467 0.93762 0.95575 0.88396 0.82204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.82 101.05 0.99 1.10 16 2 O -0.30 -2.86 10.50 -18.88 -0.20 -3.06 16 3 C 0.12 1.40 6.72 -38.86 -0.26 1.14 16 4 C 0.01 0.10 10.21 -17.37 -0.18 -0.08 16 5 N -0.39 -5.95 9.52 -9.63 -0.09 -6.04 16 6 C 0.02 0.40 6.75 -82.97 -0.56 -0.16 16 7 C 0.57 11.79 7.76 -12.37 -0.10 11.69 16 8 O -0.53 -12.61 14.97 5.30 0.08 -12.53 16 9 N -0.68 -13.11 4.91 -54.63 -0.27 -13.37 16 10 C 0.12 2.30 2.81 -67.77 -0.19 2.11 16 11 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 12 C -0.12 -1.91 5.59 -26.66 -0.15 -2.06 16 13 C -0.13 -2.16 5.20 -26.61 -0.14 -2.30 16 14 C 0.17 3.32 3.50 -67.59 -0.24 3.08 16 15 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 16 C -0.14 -2.49 7.94 37.16 0.30 -2.19 16 17 N -0.58 -14.12 2.91 -164.77 -0.48 -14.59 16 18 C -0.25 -6.60 8.61 -15.06 -0.13 -6.73 16 19 H 0.07 1.78 6.20 -52.49 -0.33 1.46 16 20 C 0.01 0.14 4.96 -17.43 -0.09 0.06 16 21 N -0.90 -26.86 11.14 55.49 0.62 -26.24 16 22 Si 0.89 22.53 29.58 -169.99 -5.03 17.50 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 26 C 0.16 3.93 4.89 -3.71 -0.02 3.91 16 27 C 0.15 2.47 7.31 -38.86 -0.28 2.19 16 28 F -0.10 -1.75 15.54 2.25 0.03 -1.72 16 29 C -0.16 -2.05 10.10 -39.12 -0.40 -2.44 16 30 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 31 H 0.06 0.25 7.67 -51.93 -0.40 -0.15 16 32 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.17 1.37 6.31 -52.49 -0.33 1.04 16 34 H 0.40 7.33 6.09 -40.82 -0.25 7.08 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.95 6.41 -51.93 -0.33 0.61 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.99 7.40 -51.93 -0.38 0.60 16 40 H 0.06 1.21 7.66 -51.93 -0.40 0.82 16 41 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.10 2.82 6.06 -51.93 -0.31 2.51 16 45 H 0.16 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -33.38 364.96 -7.31 -40.69 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.04 Total: 4.55 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -1.44 Total: 9.31 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: -0.22 Total: -60.25 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.12 Total: -15.59 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.03 Total: -1.72 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.38 -7.31 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071554832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.413 kcal (2) G-P(sol) polarization free energy of solvation -33.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds