Wall clock time and date at job start Tue Mar 31 2020 21:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35723 * 117.00186 * 2 1 4 4 C 1.39359 * 120.36009 * 359.97438 * 3 2 1 5 5 N 1.31284 * 120.88402 * 179.97438 * 4 3 2 6 6 C 1.32885 * 121.71785 * 0.02562 * 5 4 3 7 7 C 1.47758 * 119.68847 * 179.97438 * 6 5 4 8 8 O 1.21571 * 120.00318 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00013 * 359.97438 * 7 6 5 10 10 C 1.46501 * 120.00144 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.50163 * 35.06285 * 10 9 7 12 12 C 1.53110 * 109.51520 * 155.13095 * 10 9 7 13 13 C 1.53038 * 109.50242 * 58.63231 * 12 10 9 14 14 C 1.53195 * 109.34267 * 61.34830 * 13 12 10 15 15 H 1.08991 * 109.58843 * 65.13325 * 14 13 12 16 16 C 1.53001 * 109.58793 * 185.56366 * 14 13 12 17 17 N 1.46930 * 108.77212 * 305.34776 * 14 13 12 18 18 C 1.36935 * 120.62926 * 233.58692 * 17 14 13 19 19 H 1.08000 * 120.00188 * 29.05289 * 18 17 14 20 20 C 1.38818 * 120.00092 * 209.05252 * 18 17 14 21 21 N 1.31620 * 119.99342 * 15.06278 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 195.06135 * 20 18 17 23 23 H 1.48495 * 109.47287 * 359.97438 * 22 20 18 24 24 H 1.48505 * 109.46779 * 120.00451 * 22 20 18 25 25 H 1.48504 * 109.47072 * 239.99843 * 22 20 18 26 26 C 1.46923 * 118.73837 * 53.60789 * 17 14 13 27 27 C 1.39718 * 120.62563 * 0.25900 * 6 5 4 28 28 F 1.35103 * 120.46526 * 179.74398 * 27 6 5 29 29 C 1.38685 * 119.06732 * 359.46745 * 27 6 5 30 30 H 1.09003 * 109.47444 * 300.00118 * 1 2 3 31 31 H 1.09007 * 109.47108 * 60.00252 * 1 2 3 32 32 H 1.09006 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.08002 * 119.55324 * 359.97438 * 4 3 2 34 34 H 0.97002 * 120.00290 * 0.02562 * 9 7 6 35 35 H 1.08993 * 109.50572 * 298.60464 * 12 10 9 36 36 H 1.09000 * 109.45009 * 178.62327 * 12 10 9 37 37 H 1.09000 * 109.49955 * 301.37868 * 13 12 10 38 38 H 1.08999 * 109.49853 * 181.31607 * 13 12 10 39 39 H 1.09000 * 109.47179 * 59.99206 * 16 14 13 40 40 H 1.08994 * 109.47056 * 180.02562 * 16 14 13 41 41 H 1.08999 * 109.47050 * 299.99666 * 16 14 13 42 42 H 0.97004 * 119.99493 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58731 * 66.18021 * 26 17 14 44 44 H 1.08997 * 109.58692 * 186.46145 * 26 17 14 45 45 H 1.08006 * 120.78736 * 180.26242 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0005 5 7 1.8789 3.5580 0.0000 6 6 3.2022 3.6793 0.0005 7 6 3.8137 5.0244 0.0005 8 8 5.0237 5.1421 0.0005 9 7 3.0301 6.1209 -0.0006 10 6 3.6364 7.4546 -0.0012 11 1 4.5528 7.4374 -0.5910 12 6 2.6564 8.4616 -0.6092 13 6 1.3573 8.4626 0.1997 14 6 1.6570 8.8884 1.6405 15 1 2.0021 9.9221 1.6517 16 6 0.3897 8.7584 2.4879 17 7 2.7048 8.0133 2.1838 18 6 2.5134 7.3455 3.3639 19 1 1.5169 7.0602 3.6675 20 6 3.6001 7.0350 4.1699 21 7 4.7594 7.6242 3.9670 22 14 3.4170 5.7813 5.5424 23 1 2.0235 5.2685 5.5618 24 1 4.3566 4.6546 5.3122 25 1 3.7253 6.4246 6.8449 26 6 3.9619 7.8688 1.4373 27 6 4.0207 2.5471 -0.0049 28 9 5.3658 2.6742 -0.0096 29 6 3.4332 1.2908 0.0004 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 0.2151 2.3247 -0.0014 34 1 2.0646 6.0271 -0.0010 35 1 2.4416 8.1831 -1.6408 36 1 3.0989 9.4575 -0.5868 37 1 0.9271 7.4611 0.1983 38 1 0.6511 9.1625 -0.2470 39 1 0.0515 7.7222 2.4791 40 1 0.6050 9.0621 3.5123 41 1 -0.3902 9.3986 2.0758 42 1 5.5189 7.4070 4.5300 43 1 4.4951 8.8196 1.4320 44 1 4.5810 7.1054 1.9084 45 1 4.0395 0.3970 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071554832.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:49 Heat of formation + Delta-G solvation = -75.957608 kcal Electronic energy + Delta-G solvation = -30648.571685 eV Core-core repulsion = 26388.052399 eV Total energy + Delta-G solvation = -4260.519287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.18207 -41.95112 -40.87232 -39.43920 -38.73462 -35.80714 -34.52400 -33.60166 -32.48213 -31.75752 -31.24069 -28.51851 -27.85245 -26.82230 -25.75434 -24.33613 -23.86230 -22.53239 -21.94048 -20.36697 -19.72302 -19.37884 -18.79107 -18.16211 -17.42008 -17.39829 -17.12507 -16.68877 -16.58595 -16.21047 -15.93752 -15.74908 -15.57674 -15.34643 -14.92199 -14.72752 -14.50709 -14.39304 -14.14671 -14.01785 -13.89973 -13.62398 -13.01684 -12.92427 -12.87914 -12.63473 -12.54149 -12.49110 -12.40785 -12.10835 -12.05665 -11.56187 -11.38133 -11.20992 -11.03621 -10.80217 -10.75524 -10.52894 -10.04150 -9.65841 -8.56580 -7.81393 -5.25930 -0.63629 -0.20308 1.36480 1.39564 1.47681 1.62554 1.82204 2.16089 2.49052 2.57141 2.89968 3.03735 3.33955 3.34355 3.59108 3.64738 3.73710 4.00347 4.03641 4.11767 4.20496 4.41252 4.43302 4.43760 4.50356 4.65352 4.67709 4.75913 4.81472 4.83865 4.97809 5.04969 5.09074 5.12561 5.14297 5.28320 5.34256 5.58593 5.63379 5.68061 5.74546 5.75719 5.96370 6.33623 6.45153 6.67712 7.19260 7.26021 7.94169 8.44581 9.23823 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.004437 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.946928 B = 6309.466401 C = 6751.426927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.146 3.854 4 C 0.020 3.980 5 N -0.399 5.399 6 C -0.014 4.014 7 C 0.559 3.441 8 O -0.577 6.577 9 N -0.668 5.668 10 C 0.124 3.876 11 H 0.067 0.933 12 C -0.109 4.109 13 C -0.120 4.120 14 C 0.154 3.846 15 H 0.016 0.984 16 C -0.128 4.128 17 N -0.595 5.595 18 C -0.230 4.230 19 H 0.076 0.924 20 C -0.057 4.057 21 N -0.936 5.936 22 Si 0.945 3.055 23 H -0.258 1.258 24 H -0.307 1.307 25 H -0.291 1.291 26 C 0.172 3.828 27 C 0.131 3.869 28 F -0.119 7.119 29 C -0.159 4.159 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.214 0.786 34 H 0.413 0.587 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.050 0.950 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.241 0.759 43 H 0.000 1.000 44 H 0.047 0.953 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.769 -12.741 -12.984 23.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.096 3.904 4 C -0.144 4.144 5 N -0.110 5.110 6 C -0.151 4.151 7 C 0.344 3.656 8 O -0.457 6.457 9 N -0.318 5.318 10 C 0.018 3.982 11 H 0.085 0.915 12 C -0.147 4.147 13 C -0.159 4.159 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.185 4.185 17 N -0.319 5.319 18 C -0.361 4.361 19 H 0.094 0.906 20 C -0.252 4.252 21 N -0.584 5.584 22 Si 0.775 3.225 23 H -0.182 1.182 24 H -0.235 1.235 25 H -0.219 1.219 26 C 0.044 3.956 27 C 0.108 3.892 28 F -0.097 7.097 29 C -0.186 4.186 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.230 0.770 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.050 0.950 43 H 0.018 0.982 44 H 0.065 0.935 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.184 -12.047 -12.886 22.635 hybrid contribution 1.202 -1.079 1.311 2.080 sum -12.982 -13.125 -11.574 21.789 Atomic orbital electron populations 1.23701 0.74533 1.07005 1.03642 1.86084 1.24885 1.24135 1.86512 1.19974 0.91556 0.86929 0.91978 1.23742 1.02799 0.85421 1.02457 1.67462 1.08143 1.28474 1.06932 1.21026 0.90547 0.93178 1.10346 1.17963 0.86126 0.84594 0.76915 1.90795 1.15155 1.87069 1.52655 1.45552 1.10565 1.04516 1.71182 1.21633 0.96779 0.81916 0.97917 0.91522 1.21676 0.95539 0.98171 0.99326 1.21965 0.96786 1.01951 0.95164 1.20780 0.89179 0.91925 0.93210 0.96591 1.21716 0.96277 1.01375 0.99127 1.44265 1.14174 1.51457 1.21975 1.19439 0.93286 1.27343 0.96038 0.90611 1.25716 0.97096 1.02069 1.00272 1.70161 1.02027 1.44433 1.41785 0.85515 0.77796 0.79294 0.79928 1.18201 1.23542 1.21863 1.20851 0.88366 0.97196 0.89149 1.18532 0.78071 0.93967 0.98611 1.91587 1.28723 1.96634 1.92738 1.20976 0.94016 0.96855 1.06722 0.90678 0.89961 0.85214 0.76974 0.74904 0.89669 0.90458 0.92124 0.88887 0.93115 0.94624 0.90442 0.94953 0.98195 0.93502 0.79941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.82 113.37 1.11 1.14 16 2 O -0.31 -4.42 10.50 -90.46 -0.95 -5.37 16 3 C 0.15 2.85 6.72 22.73 0.15 3.01 16 4 C 0.02 0.40 10.21 85.04 0.87 1.27 16 5 N -0.40 -11.56 9.52 -184.39 -1.76 -13.32 16 6 C -0.01 -0.50 6.75 41.86 0.28 -0.21 16 7 C 0.56 24.27 7.76 86.76 0.67 24.94 16 8 O -0.58 -29.55 14.97 -3.94 -0.06 -29.61 16 9 N -0.67 -26.24 4.91 -445.01 -2.18 -28.43 16 10 C 0.12 5.00 2.81 45.09 0.13 5.13 16 11 H 0.07 2.82 7.58 -2.39 -0.02 2.80 16 12 C -0.11 -3.31 5.59 30.64 0.17 -3.14 16 13 C -0.12 -3.51 5.20 30.67 0.16 -3.35 16 14 C 0.15 5.93 3.50 44.98 0.16 6.08 16 15 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 16 C -0.13 -4.36 7.94 71.98 0.57 -3.79 16 17 N -0.59 -29.28 2.91 -675.22 -1.96 -31.24 16 18 C -0.23 -12.56 8.61 84.04 0.72 -11.84 16 19 H 0.08 3.96 6.20 -2.91 -0.02 3.94 16 20 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 21 N -0.94 -59.35 11.14 21.65 0.24 -59.11 16 22 Si 0.94 47.70 29.58 68.60 2.03 49.73 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.31 -16.22 7.11 99.48 0.71 -15.52 16 25 H -0.29 -14.60 7.11 99.48 0.71 -13.90 16 26 C 0.17 8.80 4.89 86.36 0.42 9.23 16 27 C 0.13 4.37 7.31 22.73 0.17 4.54 16 28 F -0.12 -4.58 15.54 44.97 0.70 -3.88 16 29 C -0.16 -3.82 10.10 22.57 0.23 -3.59 16 30 H 0.07 0.31 7.67 -2.39 -0.02 0.30 16 31 H 0.08 0.20 7.67 -2.38 -0.02 0.18 16 32 H 0.13 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.21 2.26 6.31 -2.91 -0.02 2.24 16 34 H 0.41 14.52 6.09 -92.71 -0.56 13.96 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.06 1.77 6.41 -2.39 -0.02 1.76 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 1.74 7.40 -2.39 -0.02 1.72 16 40 H 0.03 1.37 7.66 -2.39 -0.02 1.35 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.05 2.90 6.06 -2.39 -0.01 2.89 16 45 H 0.18 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -80.12 364.96 2.76 -77.35 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.47 Total: 17.40 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.24 Total: 26.48 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -5.66 Total: -132.10 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -1.01 Total: -34.98 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.70 Total: -3.88 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Total: -80.12 2.76 -77.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071554832.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.394 kcal (2) G-P(sol) polarization free energy of solvation -80.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds