Wall clock time and date at job start Tue Mar 31 2020 21:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35718 * 116.99932 * 2 1 4 4 C 1.39365 * 120.36362 * 0.02562 * 3 2 1 5 5 N 1.31292 * 120.88186 * 179.97438 * 4 3 2 6 6 C 1.32891 * 121.71580 * 0.02562 * 5 4 3 7 7 C 1.47755 * 119.68058 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99899 * 180.02562 * 7 6 5 9 9 N 1.34776 * 120.00688 * 0.02562 * 7 6 5 10 10 C 1.46492 * 120.00626 * 179.97438 * 9 7 6 11 11 H 1.09005 * 109.49491 * 35.06402 * 10 9 7 12 12 C 1.53042 * 109.50076 * 155.16532 * 10 9 7 13 13 C 1.53037 * 109.53899 * 181.32192 * 12 10 9 14 14 C 1.53194 * 109.31217 * 298.63202 * 13 12 10 15 15 H 1.09007 * 109.58896 * 294.85411 * 14 13 12 16 16 C 1.52998 * 109.70641 * 174.49564 * 14 13 12 17 17 N 1.46928 * 108.77374 * 54.63715 * 14 13 12 18 18 C 1.36941 * 120.62910 * 126.37462 * 17 14 13 19 19 H 1.08001 * 119.99897 * 330.17925 * 18 17 14 20 20 C 1.38813 * 120.00005 * 150.18593 * 18 17 14 21 21 N 1.31618 * 119.99927 * 344.49694 * 20 18 17 22 22 Si 1.86795 * 119.99915 * 164.49175 * 20 18 17 23 23 H 1.48504 * 109.47234 * 60.00011 * 22 20 18 24 24 H 1.48505 * 109.47321 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47649 * 299.99969 * 22 20 18 26 26 C 1.46928 * 118.73938 * 306.38835 * 17 14 13 27 27 C 1.39705 * 120.62947 * 359.97438 * 6 5 4 28 28 F 1.35106 * 120.46889 * 180.02562 * 27 6 5 29 29 C 1.38692 * 119.06998 * 0.27939 * 27 6 5 30 30 H 1.09003 * 109.46930 * 300.00091 * 1 2 3 31 31 H 1.09000 * 109.46638 * 59.99752 * 1 2 3 32 32 H 1.08992 * 109.47316 * 180.02562 * 1 2 3 33 33 H 1.07995 * 119.55445 * 359.97438 * 4 3 2 34 34 H 0.97005 * 119.99472 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.45673 * 301.34086 * 12 10 9 36 36 H 1.09000 * 109.45608 * 61.29766 * 12 10 9 37 37 H 1.09006 * 109.49997 * 178.68827 * 13 12 10 38 38 H 1.08999 * 109.50413 * 58.58201 * 13 12 10 39 39 H 1.09004 * 109.47165 * 300.63788 * 16 14 13 40 40 H 1.08999 * 109.47415 * 60.63911 * 16 14 13 41 41 H 1.08998 * 109.47627 * 180.64149 * 16 14 13 42 42 H 0.97001 * 119.99700 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.58749 * 293.82421 * 26 17 14 44 44 H 1.08997 * 109.70090 * 173.46373 * 26 17 14 45 45 H 1.08003 * 120.78591 * 179.70221 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2936 2.3829 0.0005 5 7 1.8790 3.5580 0.0010 6 6 3.2024 3.6793 0.0006 7 6 3.8139 5.0244 0.0006 8 8 5.0238 5.1420 -0.0003 9 7 3.0303 6.1209 0.0016 10 6 3.6365 7.4545 0.0022 11 1 4.5525 7.4380 -0.5885 12 6 2.6559 8.4618 -0.6026 13 6 3.3008 9.8493 -0.6327 14 6 3.6239 10.2890 0.7988 15 1 2.6980 10.4155 1.3601 16 6 4.3919 11.6120 0.7713 17 7 4.4488 9.2538 1.4366 18 6 5.6474 9.5754 2.0157 19 1 6.2272 10.4024 1.6333 20 6 6.1171 8.8383 3.0941 21 7 5.3012 8.0432 3.7531 22 14 7.9072 8.9749 3.6098 23 1 8.2107 10.3814 3.9772 24 1 8.1540 8.0940 4.7797 25 1 8.7803 8.5582 2.4831 26 6 3.9635 7.8670 1.4410 27 6 4.0209 2.5471 0.0000 28 9 5.3660 2.6741 0.0001 29 6 3.4333 1.2908 -0.0059 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 0.2152 2.3248 0.0005 34 1 2.0648 6.0271 0.0027 35 1 2.4025 8.1571 -1.6180 36 1 1.7502 8.4953 0.0030 37 1 2.6107 10.5617 -1.0849 38 1 4.2198 9.8109 -1.2175 39 1 5.3148 11.4846 0.2055 40 1 3.7783 12.3785 0.2979 41 1 4.6297 11.9154 1.7908 42 1 5.6294 7.5284 4.5069 43 1 3.0653 7.7961 2.0545 44 1 4.7339 7.2093 1.8435 45 1 4.0396 0.3970 -0.0113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071554833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:52 Heat of formation + Delta-G solvation = -79.691840 kcal Electronic energy + Delta-G solvation = -29688.448232 eV Core-core repulsion = 25427.767017 eV Total energy + Delta-G solvation = -4260.681215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.20045 -41.97559 -40.84149 -39.44987 -38.81672 -36.05860 -34.66731 -33.61910 -32.50838 -31.80518 -31.29177 -28.54024 -27.75730 -26.86519 -25.66603 -24.34079 -23.93597 -22.51167 -21.68018 -21.01874 -19.69614 -19.27295 -18.78935 -18.32139 -17.44488 -17.40519 -17.20557 -16.82119 -16.60897 -16.22725 -15.95636 -15.74515 -15.56207 -15.34489 -15.01701 -14.86982 -14.51638 -14.38990 -14.22621 -14.10872 -13.90724 -13.49671 -13.07250 -12.92725 -12.77122 -12.70198 -12.56745 -12.50383 -12.30195 -12.13613 -12.00460 -11.68090 -11.49365 -11.30144 -11.13662 -10.82632 -10.76879 -10.53461 -10.16795 -9.70444 -8.61708 -7.85254 -5.31715 -0.67092 -0.22261 1.39761 1.46283 1.50101 1.56354 1.79899 2.03662 2.49832 2.51212 2.86869 2.97487 3.31060 3.32945 3.50914 3.71309 3.73662 3.94968 4.00401 4.09419 4.25620 4.38616 4.40945 4.42368 4.44556 4.60301 4.67197 4.71838 4.81301 4.82855 4.89974 5.01727 5.07342 5.10796 5.18829 5.29413 5.31965 5.43859 5.56204 5.61351 5.70581 5.78285 5.96008 6.27049 6.41850 6.59590 7.13812 7.19628 7.89882 8.39848 9.19922 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.014255 B = 0.003213 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.817553 B = 8713.284380 C = 9923.801515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.306 6.306 3 C 0.149 3.851 4 C 0.022 3.978 5 N -0.397 5.397 6 C -0.015 4.015 7 C 0.559 3.441 8 O -0.571 6.571 9 N -0.687 5.687 10 C 0.129 3.871 11 H 0.053 0.947 12 C -0.106 4.106 13 C -0.117 4.117 14 C 0.153 3.847 15 H 0.023 0.977 16 C -0.129 4.129 17 N -0.602 5.602 18 C -0.251 4.251 19 H 0.075 0.925 20 C -0.054 4.054 21 N -0.934 5.934 22 Si 0.957 3.043 23 H -0.266 1.266 24 H -0.297 1.297 25 H -0.286 1.286 26 C 0.182 3.818 27 C 0.134 3.866 28 F -0.120 7.120 29 C -0.159 4.159 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.217 0.783 34 H 0.417 0.583 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.045 0.955 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.244 0.756 43 H -0.002 1.002 44 H 0.039 0.961 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.593 -14.401 -11.807 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.098 3.902 4 C -0.142 4.142 5 N -0.109 5.109 6 C -0.152 4.152 7 C 0.345 3.655 8 O -0.449 6.449 9 N -0.337 5.337 10 C 0.023 3.977 11 H 0.072 0.928 12 C -0.144 4.144 13 C -0.156 4.156 14 C 0.047 3.953 15 H 0.040 0.960 16 C -0.186 4.186 17 N -0.326 5.326 18 C -0.382 4.382 19 H 0.093 0.907 20 C -0.249 4.249 21 N -0.580 5.580 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.224 1.224 25 H -0.213 1.213 26 C 0.055 3.945 27 C 0.111 3.889 28 F -0.098 7.098 29 C -0.185 4.185 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.147 0.853 33 H 0.233 0.767 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.016 0.984 44 H 0.057 0.943 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.047 -13.769 -11.668 24.150 hybrid contribution 1.553 -0.877 0.958 2.025 sum -14.494 -14.646 -10.709 23.222 Atomic orbital electron populations 1.23711 0.74440 1.07029 1.03723 1.86099 1.24954 1.24176 1.86386 1.19989 0.91506 0.86986 0.91677 1.23766 1.02844 0.85291 1.02318 1.67456 1.07868 1.28516 1.07049 1.20894 0.90615 0.92685 1.11005 1.18068 0.86099 0.84633 0.76730 1.90861 1.15439 1.87004 1.51622 1.45689 1.10730 1.04765 1.72562 1.21638 0.96571 0.80941 0.98527 0.92831 1.21646 0.97396 0.94154 1.01240 1.21954 1.00689 0.96035 0.96945 1.20830 0.92839 0.89144 0.92438 0.95971 1.21727 0.99971 0.95989 1.00927 1.44305 1.20597 1.02231 1.65506 1.19442 0.96044 1.15073 1.07604 0.90695 1.25832 1.01522 1.00983 0.96599 1.70163 1.34723 1.32011 1.21115 0.85490 0.81284 0.77821 0.76842 1.19111 1.22355 1.21305 1.20713 0.96037 0.86368 0.91397 1.18540 0.78017 0.93980 0.98365 1.91602 1.28877 1.96633 1.92690 1.20980 0.94068 0.96811 1.06658 0.90397 0.89998 0.85331 0.76710 0.74551 0.89615 0.90770 0.88330 0.92859 0.93540 0.90161 0.94333 0.94726 0.98428 0.94253 0.80012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -3.61 10.50 -90.39 -0.95 -4.56 16 3 C 0.15 2.45 6.72 22.74 0.15 2.60 16 4 C 0.02 0.36 10.21 85.05 0.87 1.23 16 5 N -0.40 -9.90 9.52 -184.40 -1.76 -11.66 16 6 C -0.02 -0.49 6.75 41.86 0.28 -0.21 16 7 C 0.56 23.16 7.76 86.76 0.67 23.83 16 8 O -0.57 -29.29 14.97 -3.93 -0.06 -29.35 16 9 N -0.69 -25.47 5.07 -445.12 -2.26 -27.73 16 10 C 0.13 5.40 2.60 45.07 0.12 5.51 16 11 H 0.05 2.57 7.58 -2.38 -0.02 2.55 16 12 C -0.11 -3.34 5.35 30.62 0.16 -3.17 16 13 C -0.12 -3.75 5.38 30.67 0.16 -3.59 16 14 C 0.15 6.23 3.49 44.97 0.16 6.39 16 15 H 0.02 0.93 8.14 -2.38 -0.02 0.92 16 16 C -0.13 -4.73 7.96 71.98 0.57 -4.16 16 17 N -0.60 -31.56 2.99 -675.20 -2.02 -33.58 16 18 C -0.25 -14.49 8.57 84.03 0.72 -13.77 16 19 H 0.08 4.14 6.24 -2.91 -0.02 4.12 16 20 C -0.05 -3.27 4.94 84.86 0.42 -2.86 16 21 N -0.93 -59.85 11.23 21.65 0.24 -59.60 16 22 Si 0.96 49.00 29.58 68.60 2.03 51.03 16 23 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 25 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 26 C 0.18 9.59 4.86 86.36 0.42 10.01 16 27 C 0.13 4.11 7.31 22.73 0.17 4.27 16 28 F -0.12 -4.44 15.54 44.97 0.70 -3.74 16 29 C -0.16 -3.37 10.10 22.57 0.23 -3.14 16 30 H 0.08 0.07 7.67 -2.39 -0.02 0.06 16 31 H 0.08 0.00 7.67 -2.39 -0.02 -0.02 16 32 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 33 H 0.22 1.44 6.31 -2.91 -0.02 1.42 16 34 H 0.42 12.61 7.92 -92.70 -0.73 11.87 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.75 7.43 -2.38 -0.02 1.73 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.04 1.57 7.63 -2.39 -0.02 1.55 16 42 H 0.24 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.04 2.49 6.15 -2.39 -0.01 2.47 16 45 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -83.53 368.64 2.45 -81.08 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.30 Total: 14.04 kcal Atomic # 6 Polarization: 17.85 SS G_CDS: 6.22 Total: 24.07 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -5.79 Total: -132.56 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.01 Total: -33.91 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.70 Total: -3.74 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 2.03 Total: 51.03 kcal Total: -83.53 2.45 -81.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071554833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.389 kcal (2) G-P(sol) polarization free energy of solvation -83.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds