Wall clock time and date at job start Tue Mar 31 2020 21:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35723 * 116.99908 * 2 1 4 4 C 1.39354 * 120.36352 * 359.97273 * 3 2 1 5 5 N 1.31292 * 120.88416 * 180.02562 * 4 3 2 6 6 C 1.32884 * 121.71551 * 0.02562 * 5 4 3 7 7 C 1.47761 * 119.68462 * 180.02562 * 6 5 4 8 8 O 1.21565 * 119.99964 * 180.02562 * 7 6 5 9 9 N 1.34772 * 120.00181 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00185 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.49372 * 324.99919 * 10 9 7 12 12 C 1.53047 * 109.49656 * 204.93811 * 10 9 7 13 13 C 1.53043 * 109.53537 * 301.41274 * 12 10 9 14 14 C 1.53191 * 109.31320 * 298.63386 * 13 12 10 15 15 H 1.09000 * 109.58890 * 294.70826 * 14 13 12 16 16 C 1.52999 * 109.58258 * 174.42363 * 14 13 12 17 17 N 1.46924 * 108.77359 * 54.64077 * 14 13 12 18 18 C 1.36936 * 120.63117 * 126.41333 * 17 14 13 19 19 H 1.07994 * 120.00229 * 330.18429 * 18 17 14 20 20 C 1.38817 * 119.99934 * 150.18897 * 18 17 14 21 21 N 1.31621 * 119.99981 * 344.47956 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 164.48046 * 20 18 17 23 23 H 1.48501 * 109.46727 * 60.00003 * 22 20 18 24 24 H 1.48493 * 109.47232 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47158 * 300.00126 * 22 20 18 26 26 C 1.46998 * 118.75572 * 306.38862 * 17 14 13 27 27 C 1.39716 * 120.63107 * 359.97438 * 6 5 4 28 28 F 1.35097 * 120.47200 * 179.97438 * 27 6 5 29 29 C 1.38688 * 119.06372 * 0.02562 * 27 6 5 30 30 H 1.08999 * 109.46675 * 60.00293 * 1 2 3 31 31 H 1.09003 * 109.47202 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47182 * 300.00442 * 1 2 3 33 33 H 1.08003 * 119.55648 * 0.02922 * 4 3 2 34 34 H 0.97007 * 119.99765 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.45850 * 61.43214 * 12 10 9 36 36 H 1.08998 * 109.45812 * 181.39582 * 12 10 9 37 37 H 1.08993 * 109.49809 * 58.58944 * 13 12 10 38 38 H 1.09007 * 109.49227 * 178.68540 * 13 12 10 39 39 H 1.08996 * 109.47119 * 60.00597 * 16 14 13 40 40 H 1.09009 * 109.47009 * 180.02562 * 16 14 13 41 41 H 1.08993 * 109.47314 * 299.99959 * 16 14 13 42 42 H 0.97000 * 119.99779 * 179.97438 * 21 20 18 43 43 H 1.09005 * 109.57880 * 293.83457 * 26 17 14 44 44 H 1.09000 * 109.63437 * 173.38336 * 26 17 14 45 45 H 1.08008 * 120.78866 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2936 2.3828 -0.0006 5 7 1.8790 3.5580 -0.0011 6 6 3.2022 3.6793 -0.0016 7 6 3.8138 5.0244 -0.0016 8 8 5.0237 5.1421 -0.0025 9 7 3.0302 6.1209 -0.0016 10 6 3.6365 7.4546 -0.0021 11 1 4.5534 7.4376 0.5869 12 6 2.6572 8.4612 0.6063 13 6 1.3565 8.4613 -0.2003 14 6 1.6541 8.8868 -1.6415 15 1 1.9963 9.9217 -1.6538 16 6 0.3858 8.7559 -2.4871 17 7 2.7015 8.0122 -2.1860 18 6 2.5090 7.3439 -3.3656 19 1 1.5137 7.0473 -3.6620 20 6 3.5930 7.0477 -4.1806 21 7 4.7443 7.6569 -3.9915 22 14 3.4178 5.7846 -5.5456 23 1 2.3647 6.2252 -6.4954 24 1 4.7094 5.6520 -6.2661 25 1 3.0397 4.4731 -4.9608 26 6 3.9606 7.8682 -1.4411 27 6 4.0209 2.5471 -0.0010 28 9 5.3659 2.6741 -0.0021 29 6 3.4333 1.2908 -0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 0.2151 2.3248 -0.0005 34 1 2.0647 6.0271 -0.0012 35 1 2.4445 8.1825 1.6383 36 1 3.0991 9.4573 0.5829 37 1 0.9269 7.4597 -0.1980 38 1 0.6510 9.1614 0.2474 39 1 -0.3939 9.3959 -2.0741 40 1 0.5997 9.0586 -3.5122 41 1 0.0481 7.7196 -2.4777 42 1 5.5019 7.4497 -4.5607 43 1 4.4932 8.8193 -1.4367 44 1 4.5787 7.1031 -1.9108 45 1 4.0395 0.3969 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071554834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:55 Heat of formation + Delta-G solvation = -76.131400 kcal Electronic energy + Delta-G solvation = -30644.608400 eV Core-core repulsion = 26384.081577 eV Total energy + Delta-G solvation = -4260.526823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.18442 -41.95288 -40.87508 -39.43870 -38.73508 -35.80620 -34.51769 -33.60282 -32.48305 -31.76428 -31.24359 -28.52175 -27.85098 -26.81495 -25.75720 -24.33919 -23.86790 -22.53202 -21.93886 -20.36583 -19.72553 -19.38133 -18.79357 -18.15681 -17.42371 -17.39816 -17.11818 -16.68937 -16.58856 -16.21634 -15.94476 -15.75628 -15.57517 -15.35135 -14.91962 -14.73032 -14.50339 -14.39488 -14.14653 -14.01685 -13.90158 -13.62358 -12.99185 -12.92193 -12.87112 -12.61399 -12.57712 -12.50106 -12.41385 -12.13830 -12.07985 -11.56174 -11.38375 -11.21213 -11.03950 -10.80283 -10.75696 -10.51399 -10.04306 -9.66062 -8.55546 -7.81605 -5.26389 -0.63801 -0.20537 1.36866 1.40732 1.45699 1.62168 1.81930 2.15903 2.49162 2.56977 2.89763 3.03536 3.33693 3.33960 3.58809 3.64693 3.73504 4.00142 4.03589 4.11641 4.20412 4.40983 4.43009 4.43430 4.50146 4.65196 4.67504 4.75992 4.81144 4.83780 4.97649 5.04858 5.08929 5.12509 5.14098 5.28308 5.34087 5.58739 5.62719 5.67377 5.73922 5.74701 5.96022 6.33351 6.45133 6.67376 7.19299 7.25576 7.94009 8.45108 9.23577 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.004432 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.378478 B = 6315.757717 C = 6759.329737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.306 6.306 3 C 0.146 3.854 4 C 0.019 3.981 5 N -0.399 5.399 6 C -0.014 4.014 7 C 0.559 3.441 8 O -0.576 6.576 9 N -0.668 5.668 10 C 0.124 3.876 11 H 0.067 0.933 12 C -0.109 4.109 13 C -0.120 4.120 14 C 0.154 3.846 15 H 0.016 0.984 16 C -0.127 4.127 17 N -0.594 5.594 18 C -0.234 4.234 19 H 0.075 0.925 20 C -0.055 4.055 21 N -0.936 5.936 22 Si 0.947 3.053 23 H -0.267 1.267 24 H -0.302 1.302 25 H -0.288 1.288 26 C 0.173 3.827 27 C 0.131 3.869 28 F -0.118 7.118 29 C -0.159 4.159 30 H 0.074 0.926 31 H 0.130 0.870 32 H 0.082 0.918 33 H 0.214 0.786 34 H 0.413 0.587 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.050 0.950 42 H 0.242 0.758 43 H 0.001 0.999 44 H 0.043 0.957 45 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.558 -12.785 12.986 23.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.216 6.216 3 C 0.095 3.905 4 C -0.145 4.145 5 N -0.110 5.110 6 C -0.151 4.151 7 C 0.344 3.656 8 O -0.456 6.456 9 N -0.318 5.318 10 C 0.017 3.983 11 H 0.085 0.915 12 C -0.147 4.147 13 C -0.159 4.159 14 C 0.049 3.951 15 H 0.034 0.966 16 C -0.185 4.185 17 N -0.318 5.318 18 C -0.364 4.364 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.583 5.583 22 Si 0.776 3.224 23 H -0.192 1.192 24 H -0.229 1.229 25 H -0.215 1.215 26 C 0.046 3.954 27 C 0.108 3.892 28 F -0.096 7.096 29 C -0.186 4.186 30 H 0.093 0.907 31 H 0.148 0.852 32 H 0.100 0.900 33 H 0.230 0.770 34 H 0.251 0.749 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.062 0.938 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.953 -12.083 12.880 22.507 hybrid contribution 1.143 -1.099 -1.308 2.055 sum -12.809 -13.182 11.572 21.720 Atomic orbital electron populations 1.23699 0.74535 1.07010 1.03631 1.86085 1.24885 1.24125 1.86517 1.19975 0.91575 0.86923 0.91988 1.23741 1.02801 0.85439 1.02482 1.67463 1.08173 1.28477 1.06932 1.21034 0.90546 0.93209 1.10333 1.17959 0.86133 0.84584 0.76912 1.90791 1.15124 1.87064 1.52660 1.45560 1.10571 1.04528 1.71177 1.21626 0.96809 0.81910 0.97909 0.91467 1.21666 0.95532 0.98184 0.99334 1.21966 0.96787 1.01936 0.95174 1.20772 0.89184 0.91925 0.93188 0.96617 1.21716 0.96284 1.01365 0.99115 1.44253 1.14098 1.51453 1.22022 1.19339 0.93498 1.27578 0.96033 0.90791 1.25727 0.97240 1.01826 1.00169 1.70149 1.02613 1.43837 1.41678 0.85638 0.76431 0.80049 0.80258 1.19211 1.22884 1.21515 1.20835 0.88319 0.97075 0.89158 1.18525 0.78085 0.93953 0.98600 1.91585 1.28683 1.96633 1.92735 1.20981 0.94004 0.96870 1.06714 0.90712 0.85195 0.89954 0.76993 0.74912 0.89668 0.90436 0.92139 0.88883 0.90449 0.94677 0.93127 0.94896 0.98096 0.93804 0.79907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.03 9.82 113.37 1.11 1.14 16 2 O -0.31 -4.46 10.50 -90.46 -0.95 -5.41 16 3 C 0.15 2.87 6.72 22.73 0.15 3.03 16 4 C 0.02 0.39 10.21 85.04 0.87 1.26 16 5 N -0.40 -11.66 9.52 -184.39 -1.76 -13.41 16 6 C -0.01 -0.50 6.75 41.86 0.28 -0.22 16 7 C 0.56 24.27 7.76 86.76 0.67 24.94 16 8 O -0.58 -29.44 14.97 -3.92 -0.06 -29.50 16 9 N -0.67 -26.28 4.90 -445.11 -2.18 -28.46 16 10 C 0.12 4.99 2.81 45.07 0.13 5.12 16 11 H 0.07 2.84 7.58 -2.39 -0.02 2.82 16 12 C -0.11 -3.31 5.59 30.62 0.17 -3.14 16 13 C -0.12 -3.52 5.21 30.67 0.16 -3.36 16 14 C 0.15 5.95 3.50 44.97 0.16 6.11 16 15 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 16 C -0.13 -4.38 7.95 71.98 0.57 -3.80 16 17 N -0.59 -29.30 2.90 -675.06 -1.96 -31.26 16 18 C -0.23 -12.78 8.58 84.03 0.72 -12.06 16 19 H 0.07 3.87 6.23 -2.91 -0.02 3.85 16 20 C -0.05 -3.22 4.94 84.86 0.42 -2.80 16 21 N -0.94 -59.22 11.23 21.65 0.24 -58.98 16 22 Si 0.95 47.76 29.58 68.60 2.03 49.79 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.30 -15.67 7.11 99.48 0.71 -14.97 16 25 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 26 C 0.17 8.88 4.88 86.35 0.42 9.31 16 27 C 0.13 4.38 7.31 22.73 0.17 4.55 16 28 F -0.12 -4.55 15.54 44.97 0.70 -3.85 16 29 C -0.16 -3.83 10.10 22.57 0.23 -3.60 16 30 H 0.07 0.33 7.67 -2.39 -0.02 0.31 16 31 H 0.13 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.08 0.21 7.67 -2.39 -0.02 0.19 16 33 H 0.21 2.30 6.31 -2.91 -0.02 2.29 16 34 H 0.41 14.57 6.09 -92.70 -0.56 14.00 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 1.77 6.40 -2.39 -0.02 1.76 16 38 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.03 1.36 7.67 -2.38 -0.02 1.34 16 41 H 0.05 1.74 7.40 -2.39 -0.02 1.73 16 42 H 0.24 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.04 2.71 6.15 -2.39 -0.01 2.69 16 45 H 0.18 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -79.84 365.11 2.77 -77.08 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.47 Total: 17.53 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.23 Total: 26.47 kcal Atomic # 7 Polarization: -126.46 SS G_CDS: -5.66 Total: -132.11 kcal Atomic # 8 Polarization: -33.90 SS G_CDS: -1.01 Total: -34.91 kcal Atomic # 9 Polarization: -4.55 SS G_CDS: 0.70 Total: -3.85 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.79 kcal Total: -79.84 2.77 -77.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071554834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.947 kcal (2) G-P(sol) polarization free energy of solvation -79.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds