Wall clock time and date at job start Tue Mar 31 2020 21:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 C 1.50700 * 109.47125 * 120.00255 * 2 1 3 5 5 N 1.30939 * 122.90213 * 292.58044 * 4 2 1 6 6 C 1.29438 * 117.36538 * 179.97438 * 5 4 2 7 7 S 1.70953 * 110.38637 * 359.97438 * 6 5 4 8 8 C 1.35665 * 122.90660 * 112.53853 * 4 2 1 9 9 C 1.46678 * 126.12956 * 0.05873 * 8 4 2 10 10 O 1.21686 * 119.99922 * 354.24489 * 9 8 4 11 11 N 1.34773 * 120.00186 * 174.25325 * 9 8 4 12 12 C 1.46504 * 120.00483 * 180.02562 * 11 9 8 13 13 H 1.09001 * 109.49564 * 34.99367 * 12 11 9 14 14 C 1.53039 * 109.50103 * 155.05848 * 12 11 9 15 15 C 1.53111 * 109.50001 * 58.62163 * 14 12 11 16 16 C 1.53188 * 109.33462 * 61.33864 * 15 14 12 17 17 H 1.09008 * 109.58533 * 65.15301 * 16 15 14 18 18 C 1.52996 * 109.59001 * 185.57545 * 16 15 14 19 19 N 1.46923 * 108.77769 * 305.36681 * 16 15 14 20 20 C 1.36933 * 120.63065 * 233.62993 * 19 16 15 21 21 H 1.07995 * 120.00378 * 31.09111 * 20 19 16 22 22 C 1.38813 * 120.00156 * 211.09781 * 20 19 16 23 23 N 1.31628 * 119.99643 * 11.61401 * 22 20 19 24 24 Si 1.86795 * 120.00344 * 191.61772 * 22 20 19 25 25 H 1.48502 * 109.46850 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47342 * 120.00000 * 24 22 20 27 27 H 1.48504 * 109.47302 * 239.99742 * 24 22 20 28 28 C 1.46925 * 118.73876 * 53.60359 * 19 16 15 29 29 H 1.08991 * 109.47241 * 300.00216 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.00093 * 1 2 3 31 31 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47070 * 240.00055 * 2 1 3 33 33 H 1.09004 * 109.46976 * 59.99998 * 3 2 1 34 34 H 1.08998 * 109.47171 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47359 * 300.00268 * 3 2 1 36 36 H 1.07994 * 124.80427 * 180.02562 * 6 5 4 37 37 H 0.97005 * 119.99763 * 359.97438 * 11 9 8 38 38 H 1.09003 * 109.45593 * 178.60217 * 14 12 11 39 39 H 1.08996 * 109.45795 * 298.56688 * 14 12 11 40 40 H 1.09007 * 109.48754 * 301.37795 * 15 14 12 41 41 H 1.08998 * 109.51005 * 181.31886 * 15 14 12 42 42 H 1.09001 * 109.47640 * 179.29277 * 18 16 15 43 43 H 1.09003 * 109.47036 * 299.29243 * 18 16 15 44 44 H 1.08999 * 109.46903 * 59.28883 * 18 16 15 45 45 H 0.96997 * 119.99648 * 179.97438 * 23 22 20 46 46 H 1.08997 * 109.58928 * 186.60361 * 28 19 16 47 47 H 1.09006 * 109.70339 * 66.25371 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.8714 -0.2371 2.4406 6 6 2.3456 -0.9366 3.4210 7 16 3.0888 -2.3593 2.8327 8 6 2.6896 -1.8962 1.1801 9 6 3.0107 -2.6562 -0.0326 10 8 2.5905 -2.2849 -1.1125 11 7 3.7710 -3.7660 0.0492 12 6 4.0923 -4.5249 -1.1621 13 1 4.2149 -3.8383 -1.9997 14 6 5.3911 -5.3051 -0.9467 15 6 5.2298 -6.2459 0.2503 16 6 4.1063 -7.2463 -0.0387 17 1 4.3942 -7.8888 -0.8709 18 6 3.8460 -8.0988 1.2048 19 7 2.8889 -6.5021 -0.3893 20 6 1.7145 -6.7323 0.2761 21 1 1.7314 -7.0334 1.3131 22 6 0.5021 -6.5788 -0.3823 23 7 0.4770 -6.4383 -1.6908 24 14 -1.0937 -6.5715 0.5886 25 1 -0.7951 -6.7459 2.0328 26 1 -1.7942 -5.2789 0.3800 27 1 -1.9604 -7.6846 0.1249 28 6 2.9558 -5.5059 -1.4671 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.2803 -0.6609 4.4631 37 1 4.1062 -4.0619 0.9101 38 1 5.6163 -5.8888 -1.8394 39 1 6.2061 -4.6074 -0.7541 40 1 4.9802 -5.6651 1.1384 41 1 6.1623 -6.7846 0.4183 42 1 3.0379 -8.8014 1.0012 43 1 4.7501 -8.6501 1.4632 44 1 3.5646 -7.4523 2.0361 45 1 -0.3702 -6.3314 -2.1509 46 1 2.0114 -4.9647 -1.5237 47 1 3.1487 -6.0045 -2.4171 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883275.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:22:58 Heat of formation + Delta-G solvation = 21.192627 kcal Electronic energy + Delta-G solvation = -28769.604058 eV Core-core repulsion = 25079.510698 eV Total energy + Delta-G solvation = -3690.093360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35898 -39.17277 -37.47968 -34.75165 -34.09059 -32.75687 -31.21649 -29.98515 -29.58583 -26.95123 -26.38553 -25.64387 -24.92824 -22.55128 -22.17123 -21.49638 -20.47279 -19.29446 -18.83449 -17.73697 -16.73470 -16.34122 -15.45322 -15.33073 -15.13041 -14.55820 -14.25814 -14.10054 -14.07015 -13.79333 -13.68837 -13.40036 -13.15938 -12.85563 -12.72185 -12.53817 -12.22581 -11.98235 -11.93147 -11.28214 -11.18474 -11.00498 -10.99645 -10.94539 -10.83718 -10.74668 -10.68585 -10.40441 -10.33644 -9.97335 -9.84390 -9.55993 -9.49082 -9.42624 -9.24331 -8.80020 -8.46415 -8.41843 -6.58151 -5.75187 -3.22318 0.37694 1.28074 1.65905 2.60777 3.36922 3.43777 3.46092 3.49686 3.65541 4.18766 4.49038 4.92594 5.03198 5.17229 5.29440 5.34018 5.35916 5.40796 5.47787 5.48912 5.57038 5.62027 5.82291 5.98208 5.99174 6.01933 6.07996 6.10983 6.13833 6.28271 6.30222 6.33140 6.41360 6.45860 6.48111 6.57483 6.58793 6.70881 6.86885 7.03339 7.09984 7.35924 7.64580 7.70664 7.83029 7.97981 8.50041 8.63346 9.23707 9.86954 10.43656 11.32470 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010628 B = 0.005077 C = 0.004473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2633.853406 B = 5514.048370 C = 6258.183662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C -0.136 4.136 4 C 0.142 3.858 5 N -0.468 5.468 6 C 0.021 3.979 7 S 0.160 5.840 8 C -0.273 4.273 9 C 0.595 3.405 10 O -0.525 6.525 11 N -0.691 5.691 12 C 0.118 3.882 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.026 0.974 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.249 4.249 21 H 0.067 0.933 22 C 0.008 3.992 23 N -0.899 5.899 24 Si 0.893 3.107 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.162 3.838 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.202 0.798 37 H 0.393 0.607 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.061 0.939 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.253 0.747 46 H 0.099 0.901 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.845 9.216 7.799 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.067 4.067 3 C -0.193 4.193 4 C 0.004 3.996 5 N -0.182 5.182 6 C -0.275 4.275 7 S 0.415 5.585 8 C -0.397 4.397 9 C 0.379 3.621 10 O -0.404 6.404 11 N -0.341 5.341 12 C 0.012 3.988 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.171 4.171 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.306 5.306 20 C -0.379 4.379 21 H 0.085 0.915 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.723 3.277 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.035 3.965 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.218 0.782 37 H 0.228 0.772 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.080 0.920 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.117 0.883 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.664 9.086 7.599 14.675 hybrid contribution -1.122 0.185 0.448 1.222 sum 7.542 9.270 8.047 14.408 Atomic orbital electron populations 1.21706 0.93779 1.02222 1.01609 1.20344 0.96441 0.95733 0.94172 1.21739 1.00552 0.95148 1.01889 1.20632 0.94609 0.91136 0.93187 1.66007 1.20379 1.33093 0.98672 1.28612 1.00526 0.94929 1.03402 1.83966 1.52554 1.23373 0.98629 1.25683 1.13709 1.02760 0.97568 1.16555 0.78772 0.80402 0.86353 1.90694 1.52957 1.68863 1.27927 1.45771 1.51677 1.25230 1.11387 1.21881 0.96898 0.93856 0.86146 0.90326 1.21711 0.96165 0.98131 0.99712 1.22091 0.99281 0.98415 0.97282 1.20468 0.87594 0.91103 0.94993 0.95684 1.21790 0.99936 0.99595 0.97958 1.44024 1.05349 1.40484 1.40725 1.19088 0.83071 1.42656 0.93081 0.91537 1.25109 0.97903 1.01028 0.95066 1.69957 1.24838 1.53238 1.06245 0.86364 0.84426 0.77362 0.79508 1.20312 1.21631 1.21657 1.21202 0.96840 0.88783 0.89671 0.92658 0.92080 0.92518 0.85630 0.92240 0.93219 0.92261 0.78156 0.77220 0.90881 0.92990 0.92900 0.92744 0.91992 0.94436 0.93022 0.93689 0.88339 0.95506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.18 37.16 0.34 -1.69 16 2 C -0.05 -0.72 3.10 -91.78 -0.28 -1.01 16 3 C -0.14 -1.74 9.07 37.15 0.34 -1.41 16 4 C 0.14 2.30 5.41 -83.89 -0.45 1.85 16 5 N -0.47 -6.84 10.25 -11.53 -0.12 -6.96 16 6 C 0.02 0.24 12.22 51.75 0.63 0.88 16 7 S 0.16 2.04 22.37 -107.50 -2.40 -0.36 16 8 C -0.27 -4.59 6.48 -37.10 -0.24 -4.83 16 9 C 0.59 11.43 7.74 -12.85 -0.10 11.33 16 10 O -0.53 -11.41 13.71 5.20 0.07 -11.34 16 11 N -0.69 -12.41 4.91 -55.00 -0.27 -12.68 16 12 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 14 C -0.12 -1.83 5.59 -26.65 -0.15 -1.98 16 15 C -0.13 -2.04 5.21 -26.58 -0.14 -2.18 16 16 C 0.17 3.17 3.50 -67.61 -0.24 2.93 16 17 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 18 C -0.14 -2.39 7.96 37.16 0.30 -2.10 16 19 N -0.58 -13.55 2.90 -164.78 -0.48 -14.02 16 20 C -0.25 -6.47 8.55 -15.06 -0.13 -6.60 16 21 H 0.07 1.70 6.26 -52.49 -0.33 1.37 16 22 C 0.01 0.22 5.03 -17.43 -0.09 0.13 16 23 N -0.90 -26.10 11.09 55.49 0.62 -25.49 16 24 Si 0.89 21.98 29.57 -169.99 -5.03 16.95 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 C 0.16 3.77 4.86 -3.71 -0.02 3.75 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.13 2.24 5.06 -51.93 -0.26 1.97 16 33 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.39 6.43 5.97 -40.82 -0.24 6.19 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.21 7.64 -51.93 -0.40 0.81 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.92 7.43 -51.93 -0.39 0.53 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.10 2.73 6.11 -51.93 -0.32 2.41 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 379.24 15.07 5.72 5.72 Total: -1.00 -30.81 379.24 -9.60 -40.41 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.29 Total: 6.66 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.42 Total: 1.10 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: -0.25 Total: -59.15 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.40 Total: -0.36 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.81 -9.60 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883275.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.603 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds