Wall clock time and date at job start Tue Mar 31 2020 21:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.50698 * 109.47444 * 239.99768 * 2 1 3 5 5 N 1.30940 * 122.90128 * 52.92796 * 4 2 1 6 6 C 1.29436 * 117.36246 * 179.82933 * 5 4 2 7 7 S 1.70947 * 110.39043 * 0.42140 * 6 5 4 8 8 C 1.35659 * 122.90727 * 233.21912 * 4 2 1 9 9 C 1.46687 * 126.12957 * 359.97438 * 8 4 2 10 10 O 1.21684 * 120.00018 * 5.76548 * 9 8 4 11 11 N 1.34775 * 120.00166 * 185.77122 * 9 8 4 12 12 C 1.46500 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49552 * 325.06402 * 12 11 9 14 14 C 1.53043 * 109.49914 * 205.00140 * 12 11 9 15 15 C 1.53038 * 109.53618 * 301.41189 * 14 12 11 16 16 C 1.53191 * 109.31186 * 298.63601 * 15 14 12 17 17 H 1.08997 * 109.58696 * 294.70460 * 16 15 14 18 18 C 1.53005 * 109.58471 * 174.42404 * 16 15 14 19 19 N 1.46922 * 108.77836 * 54.63731 * 16 15 14 20 20 C 1.36939 * 120.63660 * 126.41122 * 19 16 15 21 21 H 1.07996 * 119.99424 * 328.53354 * 20 19 16 22 22 C 1.38807 * 120.00256 * 148.52322 * 20 19 16 23 23 N 1.31618 * 119.99965 * 348.67860 * 22 20 19 24 24 Si 1.86796 * 119.99911 * 168.67083 * 22 20 19 25 25 H 1.48492 * 109.47318 * 60.00360 * 24 22 20 26 26 H 1.48502 * 109.47159 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47274 * 300.00253 * 24 22 20 28 28 C 1.46927 * 118.73566 * 306.39359 * 19 16 15 29 29 H 1.08999 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47105 * 300.00342 * 1 2 3 31 31 H 1.08997 * 109.46709 * 59.99957 * 1 2 3 32 32 H 1.09008 * 109.47237 * 119.99557 * 2 1 3 33 33 H 1.09000 * 109.46898 * 59.99471 * 3 2 1 34 34 H 1.08994 * 109.47338 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46942 * 300.00182 * 3 2 1 36 36 H 1.08003 * 124.80298 * 180.23704 * 6 5 4 37 37 H 0.97003 * 119.99733 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.45901 * 61.43065 * 14 12 11 39 39 H 1.08996 * 109.45734 * 181.39219 * 14 12 11 40 40 H 1.09004 * 109.49613 * 58.58866 * 15 14 12 41 41 H 1.08996 * 109.49792 * 178.68241 * 15 14 12 42 42 H 1.08999 * 109.47305 * 60.00060 * 18 16 15 43 43 H 1.09007 * 109.46780 * 179.97438 * 18 16 15 44 44 H 1.09001 * 109.47128 * 299.99697 * 18 16 15 45 45 H 0.97008 * 119.99810 * 179.97438 * 23 22 20 46 46 H 1.09009 * 109.58774 * 293.81821 * 28 19 16 47 47 H 1.09003 * 109.58859 * 173.39628 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.6447 -0.3966 -2.4411 6 6 2.1478 -1.0755 -3.4216 7 16 3.2269 -2.2629 -2.8320 8 6 2.9210 -1.7342 -1.1791 9 6 3.5197 -2.2998 0.0347 10 8 3.1502 -1.9189 1.1297 11 7 4.4792 -3.2412 -0.0628 12 6 5.0776 -3.8057 1.1494 13 1 5.1440 -3.0335 1.9158 14 6 6.4793 -4.3307 0.8304 15 6 6.3906 -5.3911 -0.2695 16 6 5.5361 -6.5628 0.2241 17 1 6.0389 -7.0570 1.0554 18 6 5.3277 -7.5617 -0.9160 19 7 4.2353 -6.0450 0.6693 20 6 3.0700 -6.5644 0.1715 21 1 3.0371 -6.9462 -0.8381 22 6 1.9315 -6.6003 0.9647 23 7 2.0189 -6.3471 2.2534 24 14 0.2752 -7.0076 0.2032 25 1 0.3300 -8.3603 -0.4069 26 1 -0.7732 -6.9804 1.2546 27 1 -0.0483 -6.0052 -0.8437 28 6 4.2083 -4.9595 1.6591 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.9161 -0.9163 -4.4644 37 1 4.7736 -3.5450 -0.9357 38 1 7.1070 -3.5069 0.4908 39 1 6.9141 -4.7728 1.7268 40 1 5.9331 -4.9561 -1.1581 41 1 7.3915 -5.7477 -0.5126 42 1 6.2945 -7.9352 -1.2532 43 1 4.7199 -8.3947 -0.5626 44 1 4.8203 -7.0669 -1.7442 45 1 1.2232 -6.3718 2.8076 46 1 4.6016 -5.3213 2.6091 47 1 3.1836 -4.6131 1.7937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071883276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:01 Heat of formation + Delta-G solvation = 21.375985 kcal Electronic energy + Delta-G solvation = -28749.944571 eV Core-core repulsion = 25059.859162 eV Total energy + Delta-G solvation = -3690.085409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.35823 -39.17339 -37.48159 -34.75453 -34.09032 -32.75664 -31.21565 -29.98759 -29.58561 -26.97113 -26.38348 -25.63984 -24.92242 -22.55288 -22.16771 -21.49360 -20.47203 -19.30109 -18.83451 -17.73419 -16.73128 -16.33749 -15.46906 -15.33256 -15.06790 -14.63014 -14.23612 -14.11100 -14.07368 -13.76801 -13.72046 -13.40249 -13.15458 -12.83939 -12.73257 -12.53861 -12.24216 -11.98942 -11.93563 -11.27785 -11.18153 -11.01107 -11.00662 -10.94651 -10.84269 -10.73098 -10.69421 -10.40751 -10.36054 -9.97793 -9.83865 -9.56121 -9.49999 -9.42314 -9.22145 -8.79371 -8.45686 -8.42642 -6.57424 -5.74896 -3.22521 0.37943 1.28403 1.66208 2.60948 3.37549 3.43716 3.44947 3.49446 3.65849 4.19017 4.49318 4.92750 5.03430 5.16906 5.29607 5.34124 5.36584 5.39438 5.47096 5.49125 5.57027 5.61873 5.80992 5.97977 5.98559 6.00771 6.08163 6.10572 6.13752 6.27835 6.30346 6.33477 6.41209 6.42414 6.48218 6.57630 6.58916 6.71889 6.87519 7.03600 7.10150 7.36086 7.64777 7.70280 7.82574 7.97826 8.50463 8.63333 9.23965 9.87059 10.44024 11.32729 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.005043 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.091706 B = 5550.591638 C = 6281.149789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.050 4.050 3 C -0.134 4.134 4 C 0.142 3.858 5 N -0.468 5.468 6 C 0.021 3.979 7 S 0.160 5.840 8 C -0.273 4.273 9 C 0.595 3.405 10 O -0.525 6.525 11 N -0.691 5.691 12 C 0.117 3.883 13 H 0.079 0.921 14 C -0.119 4.119 15 C -0.131 4.131 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.582 5.582 20 C -0.251 4.251 21 H 0.066 0.934 22 C 0.009 3.991 23 N -0.899 5.899 24 Si 0.895 3.105 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.162 3.838 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.202 0.798 37 H 0.393 0.607 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.027 0.973 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.897 10.080 -9.394 14.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.191 4.191 4 C 0.005 3.995 5 N -0.182 5.182 6 C -0.275 4.275 7 S 0.415 5.585 8 C -0.397 4.397 9 C 0.380 3.620 10 O -0.405 6.405 11 N -0.340 5.340 12 C 0.012 3.988 13 H 0.097 0.903 14 C -0.157 4.157 15 C -0.171 4.171 16 C 0.058 3.942 17 H 0.043 0.957 18 C -0.193 4.193 19 N -0.305 5.305 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.190 4.190 23 N -0.543 5.543 24 Si 0.725 3.275 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.035 3.965 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.218 0.782 37 H 0.228 0.772 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.045 0.955 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.759 9.929 -9.150 14.679 hybrid contribution -1.170 -0.087 -0.350 1.225 sum 4.589 9.843 -9.500 14.429 Atomic orbital electron populations 1.21721 0.93983 1.01987 1.01711 1.20398 0.96315 0.95914 0.94390 1.21715 1.00716 0.94941 1.01771 1.20627 0.92601 0.93145 0.93164 1.66009 1.25358 1.28094 0.98696 1.28611 0.99067 0.96398 1.03404 1.83960 1.41984 1.34111 0.98446 1.25678 1.10292 1.06191 0.97572 1.16554 0.79506 0.79464 0.86500 1.90676 1.61282 1.61773 1.26755 1.45773 1.38750 1.39173 1.10338 1.21885 0.93211 0.97576 0.86126 0.90305 1.21699 0.95829 0.98196 0.99990 1.22080 0.99460 0.97818 0.97715 1.20466 0.87883 0.91306 0.94500 0.95699 1.21792 0.99359 0.99668 0.98456 1.44006 1.00017 1.37389 1.49129 1.18996 0.87327 1.36406 0.95353 0.91668 1.25114 0.98782 1.00246 0.94877 1.69933 1.28102 1.52704 1.03545 0.86489 0.84390 0.78295 0.78286 1.20903 1.21601 1.21175 1.21205 1.00213 0.85055 0.89985 0.92808 0.92234 0.92335 0.85332 0.92100 0.93072 0.92581 0.78159 0.77210 0.93003 0.90877 0.92900 0.92742 0.94446 0.92036 0.92999 0.93571 0.95489 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.08 37.16 0.34 -1.63 16 2 C -0.05 -0.78 3.15 -91.77 -0.29 -1.06 16 3 C -0.13 -1.74 9.18 37.16 0.34 -1.40 16 4 C 0.14 2.32 5.40 -83.90 -0.45 1.86 16 5 N -0.47 -6.87 10.26 -11.53 -0.12 -6.99 16 6 C 0.02 0.25 12.22 51.75 0.63 0.88 16 7 S 0.16 2.06 22.37 -107.50 -2.40 -0.35 16 8 C -0.27 -4.61 6.48 -37.09 -0.24 -4.85 16 9 C 0.60 11.46 7.74 -12.85 -0.10 11.36 16 10 O -0.53 -11.41 13.68 5.20 0.07 -11.34 16 11 N -0.69 -12.42 4.91 -55.00 -0.27 -12.69 16 12 C 0.12 2.19 2.81 -67.81 -0.19 2.00 16 13 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 14 C -0.12 -1.83 5.59 -26.69 -0.15 -1.98 16 15 C -0.13 -2.04 5.21 -26.61 -0.14 -2.18 16 16 C 0.17 3.17 3.50 -67.60 -0.24 2.94 16 17 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.39 7.96 37.16 0.30 -2.10 16 19 N -0.58 -13.54 2.90 -164.78 -0.48 -14.02 16 20 C -0.25 -6.52 8.55 -15.06 -0.13 -6.65 16 21 H 0.07 1.66 6.26 -52.49 -0.33 1.33 16 22 C 0.01 0.25 5.03 -17.43 -0.09 0.16 16 23 N -0.90 -26.10 11.10 55.49 0.62 -25.48 16 24 Si 0.90 22.01 29.57 -169.99 -5.03 16.98 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 C 0.16 3.78 4.85 -3.71 -0.02 3.76 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.80 8.05 -51.93 -0.42 0.38 16 32 H 0.13 2.33 4.96 -51.92 -0.26 2.07 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 37 H 0.39 6.45 5.97 -40.82 -0.24 6.20 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.81 6.40 -51.93 -0.33 0.48 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.06 1.20 7.68 -51.93 -0.40 0.80 16 44 H 0.05 0.92 7.39 -51.93 -0.38 0.54 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 47 H 0.10 2.71 6.13 -51.93 -0.32 2.39 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -30.75 379.21 -9.60 -40.36 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.28 Total: 6.70 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.42 Total: 1.12 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.25 Total: -59.19 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.07 Total: -11.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -2.40 Total: -0.35 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.75 -9.60 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.735 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds