Wall clock time and date at job start Tue Mar 31 2020 21:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47378 * 2 1 4 4 C 1.50698 * 109.47444 * 239.99768 * 2 1 3 5 5 N 1.30940 * 122.90128 * 52.92796 * 4 2 1 6 6 C 1.29436 * 117.36246 * 179.82933 * 5 4 2 7 7 S 1.70947 * 110.39043 * 0.42140 * 6 5 4 8 8 C 1.35659 * 122.90727 * 233.21912 * 4 2 1 9 9 C 1.46687 * 126.12957 * 359.97438 * 8 4 2 10 10 O 1.21684 * 120.00018 * 5.76548 * 9 8 4 11 11 N 1.34775 * 120.00166 * 185.77122 * 9 8 4 12 12 C 1.46500 * 120.00376 * 179.97438 * 11 9 8 13 13 H 1.09001 * 109.49552 * 325.06402 * 12 11 9 14 14 C 1.53043 * 109.49914 * 205.00140 * 12 11 9 15 15 C 1.53038 * 109.53618 * 301.41189 * 14 12 11 16 16 C 1.53191 * 109.31186 * 298.63601 * 15 14 12 17 17 H 1.08997 * 109.58696 * 294.70460 * 16 15 14 18 18 C 1.53005 * 109.58471 * 174.42404 * 16 15 14 19 19 N 1.46922 * 108.77836 * 54.63731 * 16 15 14 20 20 C 1.36939 * 120.63660 * 126.41122 * 19 16 15 21 21 H 1.07996 * 119.99424 * 328.53354 * 20 19 16 22 22 C 1.38807 * 120.00256 * 148.52322 * 20 19 16 23 23 N 1.31618 * 119.99965 * 348.67860 * 22 20 19 24 24 Si 1.86796 * 119.99911 * 168.67083 * 22 20 19 25 25 H 1.48492 * 109.47318 * 60.00360 * 24 22 20 26 26 H 1.48502 * 109.47159 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47274 * 300.00253 * 24 22 20 28 28 C 1.46927 * 118.73566 * 306.39359 * 19 16 15 29 29 H 1.08999 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47105 * 300.00342 * 1 2 3 31 31 H 1.08997 * 109.46709 * 59.99957 * 1 2 3 32 32 H 1.09008 * 109.47237 * 119.99557 * 2 1 3 33 33 H 1.09000 * 109.46898 * 59.99471 * 3 2 1 34 34 H 1.08994 * 109.47338 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.46942 * 300.00182 * 3 2 1 36 36 H 1.08003 * 124.80298 * 180.23704 * 6 5 4 37 37 H 0.97003 * 119.99733 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.45901 * 61.43065 * 14 12 11 39 39 H 1.08996 * 109.45734 * 181.39219 * 14 12 11 40 40 H 1.09004 * 109.49613 * 58.58866 * 15 14 12 41 41 H 1.08996 * 109.49792 * 178.68241 * 15 14 12 42 42 H 1.08999 * 109.47305 * 60.00060 * 18 16 15 43 43 H 1.09007 * 109.46780 * 179.97438 * 18 16 15 44 44 H 1.09001 * 109.47128 * 299.99697 * 18 16 15 45 45 H 0.97008 * 119.99810 * 179.97438 * 23 22 20 46 46 H 1.09009 * 109.58774 * 293.81821 * 28 19 16 47 47 H 1.09003 * 109.58859 * 173.39628 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.6447 -0.3966 -2.4411 6 6 2.1478 -1.0755 -3.4216 7 16 3.2269 -2.2629 -2.8320 8 6 2.9210 -1.7342 -1.1791 9 6 3.5197 -2.2998 0.0347 10 8 3.1502 -1.9189 1.1297 11 7 4.4792 -3.2412 -0.0628 12 6 5.0776 -3.8057 1.1494 13 1 5.1440 -3.0335 1.9158 14 6 6.4793 -4.3307 0.8304 15 6 6.3906 -5.3911 -0.2695 16 6 5.5361 -6.5628 0.2241 17 1 6.0389 -7.0570 1.0554 18 6 5.3277 -7.5617 -0.9160 19 7 4.2353 -6.0450 0.6693 20 6 3.0700 -6.5644 0.1715 21 1 3.0371 -6.9462 -0.8381 22 6 1.9315 -6.6003 0.9647 23 7 2.0189 -6.3471 2.2534 24 14 0.2752 -7.0076 0.2032 25 1 0.3300 -8.3603 -0.4069 26 1 -0.7732 -6.9804 1.2546 27 1 -0.0483 -6.0052 -0.8437 28 6 4.2083 -4.9595 1.6591 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.9161 -0.9163 -4.4644 37 1 4.7736 -3.5450 -0.9357 38 1 7.1070 -3.5069 0.4908 39 1 6.9141 -4.7728 1.7268 40 1 5.9331 -4.9561 -1.1581 41 1 7.3915 -5.7477 -0.5126 42 1 6.2945 -7.9352 -1.2532 43 1 4.7199 -8.3947 -0.5626 44 1 4.8203 -7.0669 -1.7442 45 1 1.2232 -6.3718 2.8076 46 1 4.6016 -5.3213 2.6091 47 1 3.1836 -4.6131 1.7937 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071883276.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:00 Heat of formation + Delta-G solvation = 1.881523 kcal Electronic energy + Delta-G solvation = -28750.789915 eV Core-core repulsion = 25059.859162 eV Total energy + Delta-G solvation = -3690.930753 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60770 -40.57445 -39.02469 -36.02799 -35.60935 -34.51561 -32.66148 -31.76021 -30.88888 -28.07381 -27.91796 -27.05380 -26.48591 -23.99264 -23.65222 -22.73937 -22.05021 -20.61634 -20.40250 -18.93134 -18.14957 -17.98399 -17.06150 -16.87365 -16.37912 -16.03004 -15.80796 -15.56252 -15.28121 -15.21981 -15.17925 -14.78005 -14.55730 -14.39724 -14.05644 -13.83470 -13.66583 -13.34402 -13.03524 -13.00150 -12.85623 -12.62512 -12.58007 -12.44402 -12.17406 -12.16669 -12.14774 -12.02518 -11.87436 -11.58693 -11.21605 -11.07319 -11.00325 -10.59837 -10.59140 -10.50077 -10.02433 -9.82829 -8.53279 -7.81477 -5.29745 -0.74113 0.20502 0.58959 1.38464 1.41182 1.44102 1.46000 2.09520 2.27463 2.48752 3.16532 3.34846 3.63989 3.74579 3.89984 3.99944 4.06762 4.10293 4.17765 4.21543 4.33480 4.49165 4.52947 4.65167 4.74370 4.75695 4.80371 4.82643 4.90823 4.96408 4.98807 5.04424 5.07962 5.11255 5.16711 5.26195 5.28632 5.31829 5.45899 5.58083 5.62102 5.68276 5.73924 5.76105 6.46012 6.48204 6.61885 7.19987 7.20976 7.93427 8.44716 9.23057 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.005043 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.091706 B = 5550.591638 C = 6281.149789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.058 4.058 3 C -0.123 4.123 4 C 0.143 3.857 5 N -0.489 5.489 6 C 0.044 3.956 7 S 0.203 5.797 8 C -0.323 4.323 9 C 0.588 3.412 10 O -0.564 6.564 11 N -0.685 5.685 12 C 0.127 3.873 13 H 0.070 0.930 14 C -0.111 4.111 15 C -0.120 4.120 16 C 0.154 3.846 17 H 0.015 0.985 18 C -0.128 4.128 19 N -0.594 5.594 20 C -0.235 4.235 21 H 0.075 0.925 22 C -0.051 4.051 23 N -0.935 5.935 24 Si 0.946 3.054 25 H -0.269 1.269 26 H -0.303 1.303 27 H -0.285 1.285 28 C 0.172 3.828 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.250 0.750 37 H 0.402 0.598 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.051 0.949 45 H 0.242 0.758 46 H -0.001 1.001 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.578 10.781 -13.156 18.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.079 4.079 3 C -0.181 4.181 4 C 0.005 3.995 5 N -0.203 5.203 6 C -0.251 4.251 7 S 0.459 5.541 8 C -0.447 4.447 9 C 0.375 3.625 10 O -0.446 6.446 11 N -0.334 5.334 12 C 0.021 3.979 13 H 0.088 0.912 14 C -0.149 4.149 15 C -0.159 4.159 16 C 0.049 3.951 17 H 0.033 0.967 18 C -0.186 4.186 19 N -0.318 5.318 20 C -0.366 4.366 21 H 0.092 0.908 22 C -0.246 4.246 23 N -0.582 5.582 24 Si 0.775 3.225 25 H -0.194 1.194 26 H -0.230 1.230 27 H -0.212 1.212 28 C 0.045 3.955 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.266 0.734 37 H 0.239 0.761 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.017 0.983 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.489 10.604 -12.972 18.352 hybrid contribution -1.655 -0.320 0.738 1.840 sum 5.835 10.284 -12.234 17.014 Atomic orbital electron populations 1.21666 0.93275 1.00758 1.02978 1.20376 0.96930 0.97174 0.93421 1.21632 1.00291 0.93300 1.02876 1.20768 0.92008 0.92729 0.94032 1.66073 1.26482 1.29303 0.98443 1.29504 0.96572 0.94187 1.04819 1.83700 1.41681 1.33692 0.95045 1.25526 1.12240 1.07928 0.99001 1.16990 0.79207 0.79278 0.87051 1.90659 1.62343 1.62978 1.28629 1.45665 1.38561 1.38847 1.10369 1.21601 0.94422 0.95388 0.86502 0.91185 1.21682 0.93488 0.99272 1.00473 1.21974 1.00546 0.95922 0.97493 1.20772 0.86186 0.93367 0.94816 0.96703 1.21723 1.01070 0.98227 0.97535 1.44212 1.01140 1.37673 1.48768 1.19324 0.88116 1.33780 0.95346 0.90790 1.25768 1.01751 1.01879 0.95251 1.70118 1.27806 1.55493 1.04792 0.85660 0.81124 0.78578 0.77101 1.19430 1.23006 1.21181 1.20854 0.98235 0.86826 0.89565 0.95195 0.90703 0.91261 0.88443 0.90707 0.93607 0.91658 0.73399 0.76124 0.89645 0.90484 0.92232 0.88926 0.90574 0.94675 0.92996 0.94869 0.98281 0.93326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.08 71.98 0.65 -3.10 16 2 C -0.06 -1.86 3.15 -11.54 -0.04 -1.90 16 3 C -0.12 -3.15 9.18 71.98 0.66 -2.49 16 4 C 0.14 4.62 5.40 42.09 0.23 4.85 16 5 N -0.49 -13.33 10.26 -190.40 -1.95 -15.28 16 6 C 0.04 0.88 12.22 130.60 1.60 2.47 16 7 S 0.20 4.69 22.37 -56.49 -1.26 3.42 16 8 C -0.32 -10.83 6.48 23.88 0.15 -10.68 16 9 C 0.59 23.36 7.74 86.45 0.67 24.03 16 10 O -0.56 -26.19 13.68 -4.30 -0.06 -26.25 16 11 N -0.68 -24.56 4.91 -446.14 -2.19 -26.76 16 12 C 0.13 4.78 2.81 45.07 0.13 4.91 16 13 H 0.07 2.76 7.58 -2.39 -0.02 2.74 16 14 C -0.11 -3.15 5.59 30.62 0.17 -2.98 16 15 C -0.12 -3.30 5.21 30.67 0.16 -3.14 16 16 C 0.15 5.66 3.50 44.98 0.16 5.82 16 17 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 18 C -0.13 -4.21 7.96 71.98 0.57 -3.64 16 19 N -0.59 -27.98 2.90 -675.24 -1.96 -29.94 16 20 C -0.23 -12.35 8.55 84.03 0.72 -11.64 16 21 H 0.07 3.72 6.26 -2.91 -0.02 3.70 16 22 C -0.05 -2.93 5.03 84.86 0.43 -2.50 16 23 N -0.94 -57.50 11.10 21.65 0.24 -57.26 16 24 Si 0.95 46.50 29.57 68.60 2.03 48.53 16 25 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.30 -15.43 7.11 99.48 0.71 -14.72 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 C 0.17 8.43 4.85 86.36 0.42 8.85 16 29 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 32 H 0.10 3.78 4.96 -2.38 -0.01 3.77 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.25 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.40 12.56 5.97 -92.71 -0.55 12.01 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 1.59 6.40 -2.38 -0.02 1.57 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.03 1.32 7.68 -2.38 -0.02 1.30 16 44 H 0.05 1.69 7.39 -2.39 -0.02 1.67 16 45 H 0.24 14.85 8.31 -92.70 -0.77 14.07 16 46 H 0.00 -0.04 8.14 -2.38 -0.02 -0.06 16 47 H 0.05 2.87 6.13 -2.39 -0.01 2.86 16 Total: -1.00 -72.82 379.21 1.95 -70.88 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: 0.43 Total: 23.77 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.68 Total: 8.87 kcal Atomic # 7 Polarization: -123.37 SS G_CDS: -5.86 Total: -129.23 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.06 Total: -26.25 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Atomic # 16 Polarization: 4.69 SS G_CDS: -1.26 Total: 3.42 kcal Total: -72.82 1.95 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071883276.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.760 kcal (2) G-P(sol) polarization free energy of solvation -72.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds