Wall clock time and date at job start Tue Mar 31 2020 21:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 C 1.50701 * 109.47058 * 119.99893 * 2 1 3 5 5 N 1.28647 * 124.71817 * 120.24112 * 4 2 1 6 6 C 1.33561 * 115.76495 * 180.18944 * 5 4 2 7 7 C 1.47271 * 123.14237 * 179.83146 * 6 5 4 8 8 O 1.21636 * 120.00004 * 179.72789 * 7 6 5 9 9 N 1.34773 * 119.99905 * 359.73565 * 7 6 5 10 10 C 1.46499 * 120.00018 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.49827 * 35.05032 * 10 9 7 12 12 C 1.53104 * 109.51859 * 155.12526 * 10 9 7 13 13 C 1.53040 * 109.50409 * 58.62407 * 12 10 9 14 14 C 1.53192 * 109.33834 * 61.35162 * 13 12 10 15 15 H 1.09000 * 109.58613 * 65.13444 * 14 13 12 16 16 C 1.53003 * 109.58622 * 185.56013 * 14 13 12 17 17 N 1.46930 * 108.77613 * 305.34804 * 14 13 12 18 18 C 1.36934 * 120.62925 * 233.59084 * 17 14 13 19 19 H 1.07997 * 120.00083 * 29.05171 * 18 17 14 20 20 C 1.38818 * 120.00008 * 209.05389 * 18 17 14 21 21 N 1.31620 * 119.99342 * 15.05203 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 195.05059 * 20 18 17 23 23 H 1.48499 * 109.47304 * 60.00127 * 22 20 18 24 24 H 1.48506 * 109.46600 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47518 * 299.99835 * 22 20 18 26 26 C 1.46918 * 118.73744 * 53.60536 * 17 14 13 27 27 C 1.35207 * 113.71814 * 359.56095 * 6 5 4 28 28 S 1.70767 * 124.72028 * 299.97544 * 4 2 1 29 29 H 1.09000 * 109.47209 * 300.00255 * 1 2 3 30 30 H 1.09000 * 109.46840 * 59.99988 * 1 2 3 31 31 H 1.08998 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47209 * 239.99745 * 2 1 3 33 33 H 1.09000 * 109.47236 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47228 * 299.99774 * 3 2 1 35 35 H 1.09000 * 109.47242 * 59.99765 * 3 2 1 36 36 H 0.97000 * 120.00016 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.50297 * 298.59991 * 12 10 9 38 38 H 1.08999 * 109.44846 * 178.62155 * 12 10 9 39 39 H 1.08996 * 109.49798 * 301.38331 * 13 12 10 40 40 H 1.09003 * 109.49853 * 181.31698 * 13 12 10 41 41 H 1.08998 * 109.47080 * 59.99740 * 16 14 13 42 42 H 1.08997 * 109.47262 * 179.97438 * 16 14 13 43 43 H 1.08999 * 109.46886 * 300.00316 * 16 14 13 44 44 H 0.97004 * 119.99493 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58686 * 66.18205 * 26 17 14 46 46 H 1.09005 * 109.58821 * 186.45892 * 26 17 14 47 47 H 1.07999 * 125.58815 * 180.26591 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7786 -1.7582 1.2183 6 6 3.1165 -2.2443 2.4155 7 6 3.9610 -3.4381 2.5907 8 8 4.2376 -3.8286 3.7089 9 7 4.4274 -4.0977 1.5119 10 6 5.2671 -5.2855 1.6862 11 1 4.9359 -5.8394 2.5645 12 6 5.1546 -6.1777 0.4471 13 6 5.5888 -5.3898 -0.7910 14 6 7.0515 -4.9629 -0.6333 15 1 7.6902 -5.8460 -0.6172 16 6 7.4507 -4.0588 -1.8013 17 7 7.1960 -4.2275 0.6305 18 6 7.7580 -2.9789 0.6508 19 1 7.6749 -2.3352 -0.2123 20 6 8.4346 -2.5407 1.7810 21 7 8.7954 -3.4030 2.7075 22 14 8.8328 -0.7273 1.9866 23 1 7.5727 0.0583 1.9957 24 1 9.5534 -0.5211 3.2686 25 1 9.6884 -0.2774 0.8594 26 6 6.7262 -4.8573 1.8719 27 6 2.6155 -1.5348 3.4517 28 16 1.6953 -0.2328 2.8350 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 4.2066 -3.7864 0.6202 37 1 4.1216 -6.5039 0.3260 38 1 5.7985 -7.0489 0.5675 39 1 4.9611 -4.5052 -0.8979 40 1 5.4865 -6.0176 -1.6762 41 1 6.8140 -3.1742 -1.8102 42 1 8.4915 -3.7558 -1.6871 43 1 7.3308 -4.6020 -2.7387 44 1 9.2679 -3.0967 3.4974 45 1 7.3384 -5.7318 2.0923 46 1 6.7983 -4.1444 2.6934 47 1 2.7716 -1.7543 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071900667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:21 Heat of formation + Delta-G solvation = 15.519913 kcal Electronic energy + Delta-G solvation = -28389.222590 eV Core-core repulsion = 24698.883243 eV Total energy + Delta-G solvation = -3690.339348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.28278 -38.85029 -37.37155 -35.60697 -34.05724 -32.67248 -30.71130 -29.94784 -29.75835 -27.45659 -26.44712 -25.51110 -24.81976 -23.10423 -22.10330 -20.79470 -20.40396 -19.69834 -18.70662 -18.22508 -16.41576 -16.25463 -15.72300 -15.25782 -15.15428 -14.76367 -14.43801 -14.06640 -13.98514 -13.76468 -13.51500 -13.24299 -13.12647 -12.95759 -12.71360 -12.47866 -12.40104 -12.03021 -11.89320 -11.79170 -11.46347 -11.18956 -11.16490 -11.11029 -10.90955 -10.81768 -10.65963 -10.33527 -10.27875 -9.90661 -9.80053 -9.60374 -9.58879 -9.41563 -9.37220 -8.81780 -8.38765 -8.25942 -6.53629 -5.68652 -3.11981 0.62792 1.26907 1.67308 2.23645 3.41206 3.47842 3.48061 3.67639 3.88009 4.03563 4.55371 4.61603 4.82773 4.84805 5.22645 5.31401 5.33521 5.37279 5.40888 5.42251 5.50482 5.51783 5.57667 5.59413 5.66689 5.71989 5.93449 5.98229 6.02257 6.07689 6.18040 6.21419 6.38923 6.40764 6.49996 6.58334 6.67742 6.75302 6.96409 7.10257 7.19156 7.42647 7.54616 7.76753 7.89584 8.21806 8.55567 8.81721 9.29982 9.94590 10.50539 11.39324 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.004504 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.427863 B = 6215.360848 C = 6746.977472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.019 4.019 3 C -0.149 4.149 4 C 0.032 3.968 5 N -0.437 5.437 6 C 0.025 3.975 7 C 0.590 3.410 8 O -0.543 6.543 9 N -0.678 5.678 10 C 0.116 3.884 11 H 0.076 0.924 12 C -0.118 4.118 13 C -0.132 4.132 14 C 0.166 3.834 15 H 0.025 0.975 16 C -0.135 4.135 17 N -0.582 5.582 18 C -0.246 4.246 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.900 5.900 22 Si 0.895 3.105 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.283 1.283 26 C 0.162 3.838 27 C -0.230 4.230 28 S 0.188 5.812 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.404 0.596 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.097 0.903 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.562 5.003 -5.434 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.041 4.041 3 C -0.207 4.207 4 C -0.248 4.248 5 N -0.151 5.151 6 C -0.110 4.110 7 C 0.372 3.628 8 O -0.421 6.421 9 N -0.328 5.328 10 C 0.010 3.990 11 H 0.094 0.906 12 C -0.156 4.156 13 C -0.171 4.171 14 C 0.059 3.941 15 H 0.042 0.958 16 C -0.193 4.193 17 N -0.305 5.305 18 C -0.375 4.375 19 H 0.084 0.916 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.725 3.275 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.210 1.210 26 C 0.035 3.965 27 C -0.372 4.372 28 S 0.445 5.555 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.121 0.879 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.241 0.759 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.116 0.884 47 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.597 5.277 -4.562 18.929 hybrid contribution 0.886 0.283 0.008 0.930 sum -16.711 5.560 -4.555 18.192 Atomic orbital electron populations 1.21927 0.93272 1.02680 1.02592 1.19811 0.95891 0.95469 0.92923 1.21946 1.02282 0.93980 1.02531 1.27135 1.00929 0.97284 0.99471 1.66928 1.11544 1.10370 1.26282 1.20618 1.03136 1.00197 0.87014 1.16943 0.79258 0.81461 0.85141 1.90786 1.59876 1.67199 1.24274 1.45672 1.49610 1.28794 1.08704 1.21869 0.94878 0.84992 0.97248 0.90594 1.21692 1.00288 0.98266 0.95322 1.22076 0.99673 0.99083 0.96265 1.20455 0.91971 0.93798 0.87829 0.95774 1.21791 1.02248 0.99386 0.95859 1.44018 1.69358 1.16349 1.00770 1.19031 1.27279 0.90200 1.01022 0.91589 1.25023 0.97984 0.97303 0.99037 1.69971 1.41446 1.32140 1.10903 0.86483 0.77884 0.86041 0.77045 1.21370 1.21669 1.20967 1.21194 0.86649 0.97620 0.91025 1.26554 1.04424 1.00234 1.05986 1.82544 1.45950 1.26487 1.00563 0.92262 0.91185 0.91976 0.87889 0.91660 0.91148 0.92273 0.75948 0.93036 0.91050 0.92508 0.92880 0.92916 0.92119 0.94445 0.93706 0.95628 0.88442 0.79530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.09 37.16 0.34 -0.73 16 2 C -0.02 -0.18 3.34 -91.77 -0.31 -0.49 16 3 C -0.15 -1.27 9.09 37.16 0.34 -0.93 16 4 C 0.03 0.42 6.00 -13.61 -0.08 0.34 16 5 N -0.44 -7.22 10.12 -8.51 -0.09 -7.30 16 6 C 0.02 0.45 6.70 -84.52 -0.57 -0.11 16 7 C 0.59 12.45 7.76 -12.59 -0.10 12.35 16 8 O -0.54 -12.89 16.38 5.25 0.09 -12.81 16 9 N -0.68 -13.59 4.91 -54.78 -0.27 -13.86 16 10 C 0.12 2.34 2.81 -67.78 -0.19 2.15 16 11 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 12 C -0.12 -1.97 5.59 -26.66 -0.15 -2.12 16 13 C -0.13 -2.23 5.20 -26.61 -0.14 -2.37 16 14 C 0.17 3.39 3.50 -67.60 -0.24 3.16 16 15 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 16 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 17 N -0.58 -14.31 2.91 -164.77 -0.48 -14.79 16 18 C -0.25 -6.69 8.61 -15.06 -0.13 -6.82 16 19 H 0.07 1.77 6.20 -52.49 -0.33 1.45 16 20 C 0.01 0.15 4.96 -17.43 -0.09 0.06 16 21 N -0.90 -27.00 11.14 55.49 0.62 -26.39 16 22 Si 0.90 22.71 29.58 -169.99 -5.03 17.68 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.16 3.99 4.89 -3.71 -0.02 3.97 16 27 C -0.23 -3.54 10.62 29.65 0.31 -3.23 16 28 S 0.19 2.15 22.22 -107.50 -2.39 -0.23 16 29 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 7.91 -51.93 -0.41 0.04 16 36 H 0.40 7.73 6.30 -40.82 -0.26 7.47 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.06 0.98 6.41 -51.93 -0.33 0.65 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 42 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 2.83 6.06 -51.93 -0.31 2.52 16 47 H 0.19 2.71 8.03 -52.49 -0.42 2.29 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -32.61 384.01 -9.91 -42.52 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.43 Total: 6.40 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.72 Total: 2.99 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -0.22 Total: -62.34 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.03 Total: 17.68 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.39 Total: -0.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.61 -9.91 -42.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071900667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.039 kcal (2) G-P(sol) polarization free energy of solvation -32.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds