Wall clock time and date at job start Tue Mar 31 2020 21:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 C 1.50701 * 109.47058 * 119.99893 * 2 1 3 5 5 N 1.28647 * 124.71817 * 120.24112 * 4 2 1 6 6 C 1.33561 * 115.76495 * 180.18944 * 5 4 2 7 7 C 1.47271 * 123.14237 * 179.83146 * 6 5 4 8 8 O 1.21636 * 120.00004 * 179.72789 * 7 6 5 9 9 N 1.34773 * 119.99905 * 359.73565 * 7 6 5 10 10 C 1.46499 * 120.00018 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.49827 * 35.05032 * 10 9 7 12 12 C 1.53104 * 109.51859 * 155.12526 * 10 9 7 13 13 C 1.53040 * 109.50409 * 58.62407 * 12 10 9 14 14 C 1.53192 * 109.33834 * 61.35162 * 13 12 10 15 15 H 1.09000 * 109.58613 * 65.13444 * 14 13 12 16 16 C 1.53003 * 109.58622 * 185.56013 * 14 13 12 17 17 N 1.46930 * 108.77613 * 305.34804 * 14 13 12 18 18 C 1.36934 * 120.62925 * 233.59084 * 17 14 13 19 19 H 1.07997 * 120.00083 * 29.05171 * 18 17 14 20 20 C 1.38818 * 120.00008 * 209.05389 * 18 17 14 21 21 N 1.31620 * 119.99342 * 15.05203 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 195.05059 * 20 18 17 23 23 H 1.48499 * 109.47304 * 60.00127 * 22 20 18 24 24 H 1.48506 * 109.46600 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47518 * 299.99835 * 22 20 18 26 26 C 1.46918 * 118.73744 * 53.60536 * 17 14 13 27 27 C 1.35207 * 113.71814 * 359.56095 * 6 5 4 28 28 S 1.70767 * 124.72028 * 299.97544 * 4 2 1 29 29 H 1.09000 * 109.47209 * 300.00255 * 1 2 3 30 30 H 1.09000 * 109.46840 * 59.99988 * 1 2 3 31 31 H 1.08998 * 109.47010 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47209 * 239.99745 * 2 1 3 33 33 H 1.09000 * 109.47236 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47228 * 299.99774 * 3 2 1 35 35 H 1.09000 * 109.47242 * 59.99765 * 3 2 1 36 36 H 0.97000 * 120.00016 * 359.97438 * 9 7 6 37 37 H 1.09001 * 109.50297 * 298.59991 * 12 10 9 38 38 H 1.08999 * 109.44846 * 178.62155 * 12 10 9 39 39 H 1.08996 * 109.49798 * 301.38331 * 13 12 10 40 40 H 1.09003 * 109.49853 * 181.31698 * 13 12 10 41 41 H 1.08998 * 109.47080 * 59.99740 * 16 14 13 42 42 H 1.08997 * 109.47262 * 179.97438 * 16 14 13 43 43 H 1.08999 * 109.46886 * 300.00316 * 16 14 13 44 44 H 0.97004 * 119.99493 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.58686 * 66.18205 * 26 17 14 46 46 H 1.09005 * 109.58821 * 186.45892 * 26 17 14 47 47 H 1.07999 * 125.58815 * 180.26591 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7786 -1.7582 1.2183 6 6 3.1165 -2.2443 2.4155 7 6 3.9610 -3.4381 2.5907 8 8 4.2376 -3.8286 3.7089 9 7 4.4274 -4.0977 1.5119 10 6 5.2671 -5.2855 1.6862 11 1 4.9359 -5.8394 2.5645 12 6 5.1546 -6.1777 0.4471 13 6 5.5888 -5.3898 -0.7910 14 6 7.0515 -4.9629 -0.6333 15 1 7.6902 -5.8460 -0.6172 16 6 7.4507 -4.0588 -1.8013 17 7 7.1960 -4.2275 0.6305 18 6 7.7580 -2.9789 0.6508 19 1 7.6749 -2.3352 -0.2123 20 6 8.4346 -2.5407 1.7810 21 7 8.7954 -3.4030 2.7075 22 14 8.8328 -0.7273 1.9866 23 1 7.5727 0.0583 1.9957 24 1 9.5534 -0.5211 3.2686 25 1 9.6884 -0.2774 0.8594 26 6 6.7262 -4.8573 1.8719 27 6 2.6155 -1.5348 3.4517 28 16 1.6953 -0.2328 2.8350 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 4.2066 -3.7864 0.6202 37 1 4.1216 -6.5039 0.3260 38 1 5.7985 -7.0489 0.5675 39 1 4.9611 -4.5052 -0.8979 40 1 5.4865 -6.0176 -1.6762 41 1 6.8140 -3.1742 -1.8102 42 1 8.4915 -3.7558 -1.6871 43 1 7.3308 -4.6020 -2.7387 44 1 9.2679 -3.0967 3.4974 45 1 7.3384 -5.7318 2.0923 46 1 6.7983 -4.1444 2.6934 47 1 2.7716 -1.7543 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071900667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:20 Heat of formation + Delta-G solvation = -5.856732 kcal Electronic energy + Delta-G solvation = -28390.149551 eV Core-core repulsion = 24698.883243 eV Total energy + Delta-G solvation = -3691.266309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63516 -40.32158 -39.00479 -36.43394 -35.82970 -34.53800 -32.30296 -31.76062 -31.04321 -28.04804 -28.04119 -27.14382 -26.36621 -24.34476 -23.86257 -22.13721 -21.71714 -21.04260 -20.40990 -19.48395 -18.22242 -17.73111 -17.04869 -16.87264 -16.53714 -16.24318 -15.85304 -15.60175 -15.30380 -15.20298 -15.05497 -14.72286 -14.44760 -14.26003 -14.06421 -13.80589 -13.64783 -13.09378 -13.02813 -13.00842 -12.88938 -12.65684 -12.62034 -12.59778 -12.44478 -12.15972 -12.14350 -12.11985 -11.88873 -11.60776 -11.30417 -11.15563 -11.07426 -10.84489 -10.67873 -10.54000 -10.11373 -9.77971 -8.58795 -7.83710 -5.28215 -0.52897 0.22696 0.56560 0.94331 1.35128 1.38740 1.43771 2.21590 2.42951 2.47797 2.90431 3.31399 3.61379 3.68681 3.95837 4.02608 4.07410 4.09151 4.16211 4.16386 4.20621 4.46170 4.48124 4.61472 4.70613 4.78138 4.79142 4.82612 4.91788 4.93570 4.95961 5.01581 5.06300 5.07733 5.15429 5.23398 5.29779 5.31991 5.36618 5.53886 5.59243 5.64472 5.71075 5.71943 6.34385 6.42540 6.68582 7.16898 7.22744 7.91445 8.41904 9.21300 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010298 B = 0.004504 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.427863 B = 6215.360848 C = 6746.977472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.021 4.021 3 C -0.148 4.148 4 C 0.022 3.978 5 N -0.465 5.465 6 C -0.008 4.008 7 C 0.580 3.420 8 O -0.584 6.584 9 N -0.673 5.673 10 C 0.123 3.877 11 H 0.068 0.932 12 C -0.109 4.109 13 C -0.120 4.120 14 C 0.155 3.845 15 H 0.019 0.981 16 C -0.127 4.127 17 N -0.594 5.594 18 C -0.235 4.235 19 H 0.072 0.928 20 C -0.055 4.055 21 N -0.935 5.935 22 Si 0.948 3.052 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.268 1.268 26 C 0.172 3.828 27 C -0.250 4.250 28 S 0.288 5.712 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.043 0.957 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.243 0.757 45 H 0.002 0.998 46 H 0.048 0.952 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.387 6.411 -8.032 22.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 C -0.206 4.206 4 C -0.257 4.257 5 N -0.181 5.181 6 C -0.143 4.143 7 C 0.364 3.636 8 O -0.465 6.465 9 N -0.322 5.322 10 C 0.017 3.983 11 H 0.086 0.914 12 C -0.147 4.147 13 C -0.159 4.159 14 C 0.049 3.951 15 H 0.037 0.963 16 C -0.185 4.185 17 N -0.318 5.318 18 C -0.366 4.366 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.778 3.222 23 H -0.217 1.217 24 H -0.225 1.225 25 H -0.194 1.194 26 C 0.045 3.955 27 C -0.393 4.393 28 S 0.547 5.453 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.055 0.945 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.020 0.980 46 H 0.066 0.934 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -20.451 6.699 -7.226 22.701 hybrid contribution 1.691 -0.103 0.782 1.866 sum -18.760 6.596 -6.444 20.904 Atomic orbital electron populations 1.21932 0.91006 1.02850 1.04254 1.20024 0.97590 0.95582 0.91064 1.21971 1.00918 0.93369 1.04354 1.27885 0.99551 0.96404 1.01910 1.66902 1.13295 1.12143 1.25719 1.20309 1.04901 1.00379 0.88724 1.17511 0.79200 0.82201 0.84685 1.90741 1.61547 1.68596 1.25639 1.45621 1.49085 1.28629 1.08840 1.21652 0.91717 0.85683 0.99282 0.91371 1.21672 1.02466 0.97483 0.93080 1.21960 0.96449 0.99694 0.97784 1.20770 0.94544 0.93474 0.86264 0.96340 1.21711 1.00435 0.99335 0.96975 1.44223 1.69241 1.16152 1.02183 1.19333 1.25299 0.91381 1.00557 0.91085 1.25701 0.99213 1.00551 0.99461 1.70147 1.43277 1.33520 1.11288 0.85612 0.77484 0.82208 0.76911 1.21656 1.22520 1.19352 1.20853 0.89428 0.95243 0.89956 1.26854 1.04738 1.01763 1.05922 1.82113 1.42689 1.22709 0.97818 0.91252 0.88920 0.92569 0.88489 0.93816 0.88676 0.91196 0.75293 0.89878 0.90230 0.92654 0.88909 0.93472 0.94510 0.90408 0.94818 0.98023 0.93393 0.79580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.09 71.98 0.65 -0.90 16 2 C -0.02 -0.34 3.34 -11.54 -0.04 -0.38 16 3 C -0.15 -2.07 9.09 71.98 0.65 -1.42 16 4 C 0.02 0.54 6.00 88.58 0.53 1.07 16 5 N -0.47 -15.21 10.12 -180.83 -1.83 -17.05 16 6 C -0.01 -0.31 6.70 40.56 0.27 -0.03 16 7 C 0.58 25.57 7.76 86.62 0.67 26.24 16 8 O -0.58 -29.48 16.38 -4.15 -0.07 -29.55 16 9 N -0.67 -27.54 4.91 -445.47 -2.19 -29.73 16 10 C 0.12 5.08 2.81 45.09 0.13 5.20 16 11 H 0.07 2.91 7.58 -2.39 -0.02 2.89 16 12 C -0.11 -3.44 5.59 30.64 0.17 -3.27 16 13 C -0.12 -3.72 5.20 30.67 0.16 -3.56 16 14 C 0.15 6.15 3.50 44.97 0.16 6.30 16 15 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 16 C -0.13 -4.55 7.95 71.98 0.57 -3.98 16 17 N -0.59 -29.86 2.91 -675.22 -1.96 -31.82 16 18 C -0.24 -13.09 8.61 84.04 0.72 -12.37 16 19 H 0.07 3.83 6.20 -2.91 -0.02 3.81 16 20 C -0.05 -3.22 4.96 84.86 0.42 -2.80 16 21 N -0.94 -59.18 11.14 21.65 0.24 -58.94 16 22 Si 0.95 48.10 29.58 68.60 2.03 50.13 16 23 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 26 C 0.17 8.93 4.89 86.37 0.42 9.36 16 27 C -0.25 -7.70 10.62 67.12 0.71 -6.99 16 28 S 0.29 5.96 22.22 -56.49 -1.26 4.70 16 29 H 0.07 0.62 7.92 -2.39 -0.02 0.60 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 35 H 0.07 0.82 7.91 -2.39 -0.02 0.80 16 36 H 0.41 15.65 6.30 -92.71 -0.58 15.07 16 37 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 38 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 1.77 6.41 -2.39 -0.02 1.75 16 40 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.05 1.72 7.40 -2.39 -0.02 1.70 16 42 H 0.04 1.46 7.66 -2.39 -0.02 1.44 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.24 15.20 8.31 -92.71 -0.77 14.43 16 45 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.05 2.97 6.06 -2.38 -0.01 2.96 16 47 H 0.19 5.56 8.03 -2.91 -0.02 5.54 16 Total: -1.00 -76.60 384.01 1.56 -75.04 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.39 Total: 24.75 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 6.21 Total: 12.47 kcal Atomic # 7 Polarization: -131.80 SS G_CDS: -5.74 Total: -137.54 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -0.07 Total: -29.55 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.26 Total: 4.70 kcal Total: -76.60 1.56 -75.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071900667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.183 kcal (2) G-P(sol) polarization free energy of solvation -76.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds