Wall clock time and date at job start Tue Mar 31 2020 21:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47441 * 2 1 4 4 C 1.50700 * 109.46904 * 120.00341 * 2 1 3 5 5 N 1.28652 * 124.72008 * 120.00139 * 4 2 1 6 6 C 1.33556 * 115.76210 * 179.97438 * 5 4 2 7 7 C 1.47273 * 123.13983 * 179.97438 * 6 5 4 8 8 O 1.21632 * 119.99826 * 179.97438 * 7 6 5 9 9 N 1.34771 * 119.99696 * 359.97438 * 7 6 5 10 10 C 1.46500 * 119.99889 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.49647 * 324.93564 * 10 9 7 12 12 C 1.53034 * 109.49867 * 204.87391 * 10 9 7 13 13 C 1.53042 * 109.53918 * 301.34633 * 12 10 9 14 14 C 1.53190 * 109.33729 * 298.68462 * 13 12 10 15 15 H 1.08995 * 109.59068 * 294.68286 * 14 13 12 16 16 C 1.53007 * 109.58414 * 174.40532 * 14 13 12 17 17 N 1.46923 * 108.77703 * 54.62131 * 14 13 12 18 18 C 1.36931 * 120.63441 * 126.41140 * 17 14 13 19 19 H 1.08001 * 119.99745 * 330.84358 * 18 17 14 20 20 C 1.38813 * 120.00238 * 150.84464 * 18 17 14 21 21 N 1.31617 * 120.00179 * 343.81948 * 20 18 17 22 22 Si 1.86801 * 120.00044 * 163.81009 * 20 18 17 23 23 H 1.48506 * 109.46732 * 94.31496 * 22 20 18 24 24 H 1.48495 * 109.47420 * 214.30915 * 22 20 18 25 25 H 1.48493 * 109.47169 * 334.31653 * 22 20 18 26 26 C 1.46932 * 118.73366 * 306.38623 * 17 14 13 27 27 C 1.35209 * 113.72217 * 0.24302 * 6 5 4 28 28 S 1.70768 * 124.71770 * 299.99131 * 4 2 1 29 29 H 1.08996 * 109.46899 * 300.00379 * 1 2 3 30 30 H 1.09006 * 109.47295 * 59.99664 * 1 2 3 31 31 H 1.08995 * 109.47733 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47085 * 239.99959 * 2 1 3 33 33 H 1.08998 * 109.47170 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47042 * 299.99646 * 3 2 1 35 35 H 1.08996 * 109.47383 * 59.99918 * 3 2 1 36 36 H 0.97001 * 120.00547 * 0.02562 * 9 7 6 37 37 H 1.09010 * 109.43541 * 181.34254 * 12 10 9 38 38 H 1.09003 * 109.48895 * 61.38722 * 12 10 9 39 39 H 1.09006 * 109.49632 * 178.71594 * 13 12 10 40 40 H 1.09004 * 109.49717 * 58.65396 * 13 12 10 41 41 H 1.08997 * 109.47011 * 59.99840 * 16 14 13 42 42 H 1.08993 * 109.47228 * 180.02562 * 16 14 13 43 43 H 1.09005 * 109.46836 * 300.00296 * 16 14 13 44 44 H 0.96995 * 120.00803 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58308 * 173.39718 * 26 17 14 46 46 H 1.08995 * 109.58847 * 293.82156 * 26 17 14 47 47 H 1.07999 * 125.58708 * 179.75778 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.7750 -1.7609 1.2182 6 6 3.1171 -2.2439 2.4154 7 6 3.9610 -3.4381 2.5906 8 8 4.2380 -3.8283 3.7088 9 7 4.4262 -4.0986 1.5118 10 6 5.2661 -5.2862 1.6861 11 1 5.8998 -5.1581 2.5636 12 6 6.1429 -5.4781 0.4466 13 6 5.2546 -5.6261 -0.7909 14 6 4.3644 -6.8626 -0.6313 15 1 4.9837 -7.7594 -0.6178 16 6 3.3777 -6.9383 -1.7983 17 7 3.6243 -6.7525 0.6331 18 6 2.2599 -6.8661 0.6550 19 1 1.6796 -6.5722 -0.2072 20 6 1.6224 -7.3588 1.7854 21 7 2.3122 -8.0069 2.7000 22 14 -0.2143 -7.1019 2.0087 23 1 -0.9460 -8.2877 1.4951 24 1 -0.5170 -6.9200 3.4510 25 1 -0.6401 -5.8939 1.2573 26 6 4.3761 -6.5189 1.8737 27 6 2.6117 -1.5376 3.4516 28 16 1.6949 -0.2332 2.8350 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4424 -0.0005 34 1 1.6768 1.9563 -0.8901 35 1 1.6768 1.9563 0.8899 36 1 4.2056 -3.7872 0.6200 37 1 6.7501 -6.3753 0.5671 38 1 6.7944 -4.6127 0.3245 39 1 5.8801 -5.7399 -1.6763 40 1 4.6298 -4.7394 -0.8984 41 1 3.9289 -7.0071 -2.7361 42 1 2.7451 -7.8183 -1.6827 43 1 2.7561 -6.0429 -1.8071 44 1 1.8670 -8.3509 3.4901 45 1 3.6809 -6.3460 2.6952 46 1 4.9966 -7.3875 2.0940 47 1 2.7637 -1.7600 4.4975 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071900668.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:23 Heat of formation + Delta-G solvation = -6.042420 kcal Electronic energy + Delta-G solvation = -28388.969963 eV Core-core repulsion = 24697.695603 eV Total energy + Delta-G solvation = -3691.274361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.63586 -40.32331 -39.00609 -36.43257 -35.83250 -34.53680 -32.30474 -31.77157 -31.04109 -28.04674 -28.04228 -27.14335 -26.36670 -24.34553 -23.87047 -22.13581 -21.71537 -21.04028 -20.41032 -19.48241 -18.22520 -17.72909 -17.04809 -16.87095 -16.53579 -16.24629 -15.85251 -15.60541 -15.30882 -15.20270 -15.05443 -14.72370 -14.45585 -14.25842 -14.06490 -13.80717 -13.65461 -13.09235 -13.02492 -12.99633 -12.92610 -12.65882 -12.62402 -12.56539 -12.45416 -12.16582 -12.14350 -12.11734 -11.88708 -11.60828 -11.30420 -11.15734 -11.07125 -10.84323 -10.67533 -10.54539 -10.11368 -9.77870 -8.59196 -7.84634 -5.28343 -0.52723 0.22904 0.56805 0.94449 1.34478 1.37439 1.44865 2.21592 2.42910 2.47456 2.90571 3.30795 3.61066 3.68763 3.95862 4.02735 4.07241 4.09392 4.16181 4.16548 4.20779 4.45896 4.48310 4.61319 4.70639 4.78274 4.79091 4.82772 4.91940 4.93345 4.96041 5.01502 5.06111 5.07774 5.15604 5.23434 5.29653 5.32169 5.36733 5.53896 5.58762 5.64057 5.70532 5.71182 6.34509 6.42049 6.68682 7.16434 7.22743 7.91069 8.41748 9.20807 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010311 B = 0.004506 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.939836 B = 6212.532233 C = 6743.780811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.021 4.021 3 C -0.142 4.142 4 C 0.022 3.978 5 N -0.465 5.465 6 C -0.008 4.008 7 C 0.580 3.420 8 O -0.584 6.584 9 N -0.673 5.673 10 C 0.123 3.877 11 H 0.068 0.932 12 C -0.109 4.109 13 C -0.120 4.120 14 C 0.155 3.845 15 H 0.019 0.981 16 C -0.127 4.127 17 N -0.594 5.594 18 C -0.234 4.234 19 H 0.071 0.929 20 C -0.054 4.054 21 N -0.935 5.935 22 Si 0.946 3.054 23 H -0.281 1.281 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.173 3.827 27 C -0.250 4.250 28 S 0.289 5.711 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.043 0.957 32 H 0.097 0.903 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.046 0.954 44 H 0.243 0.757 45 H 0.045 0.955 46 H 0.002 0.998 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.787 21.494 -8.017 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 C -0.201 4.201 4 C -0.258 4.258 5 N -0.180 5.180 6 C -0.143 4.143 7 C 0.364 3.636 8 O -0.465 6.465 9 N -0.322 5.322 10 C 0.017 3.983 11 H 0.087 0.913 12 C -0.147 4.147 13 C -0.159 4.159 14 C 0.049 3.951 15 H 0.036 0.964 16 C -0.185 4.185 17 N -0.318 5.318 18 C -0.365 4.365 19 H 0.089 0.911 20 C -0.249 4.249 21 N -0.582 5.582 22 Si 0.775 3.225 23 H -0.207 1.207 24 H -0.230 1.230 25 H -0.197 1.197 26 C 0.046 3.954 27 C -0.393 4.393 28 S 0.547 5.453 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.062 0.938 32 H 0.115 0.885 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.247 0.753 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.065 0.935 44 H 0.052 0.948 45 H 0.064 0.936 46 H 0.020 0.980 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.547 21.672 -7.215 22.848 hybrid contribution -0.470 -1.658 0.799 1.899 sum 0.077 20.015 -6.416 21.018 Atomic orbital electron populations 1.21969 0.92035 1.02253 1.04352 1.20022 0.96892 0.96274 0.91077 1.21933 1.01451 0.92418 1.04250 1.27880 0.99653 0.96312 1.01910 1.66904 1.14147 1.11283 1.25708 1.20303 1.05246 1.00037 0.88718 1.17512 0.79188 0.82217 0.84674 1.90741 1.60824 1.69326 1.25643 1.45625 1.50266 1.27439 1.08856 1.21635 0.91922 0.85450 0.99305 0.91343 1.21662 0.96979 1.02994 0.93071 1.21960 0.97895 0.98229 0.97787 1.20766 0.92854 0.95186 0.86257 0.96358 1.21715 0.98883 1.00882 0.96987 1.44230 1.02355 1.83003 1.02189 1.19353 0.83296 1.33269 1.00574 0.91098 1.25684 1.00697 0.98887 0.99603 1.70154 1.35973 1.40220 1.11843 0.85570 0.82558 0.78139 0.76227 1.20721 1.22977 1.19729 1.20834 0.92979 0.91707 0.89866 1.26854 1.04437 1.02057 1.05920 1.82118 1.43144 1.22223 0.97794 0.91170 0.88712 0.93798 0.88506 0.92578 0.88934 0.91248 0.75275 0.90230 0.89862 0.88908 0.92638 0.90411 0.94509 0.93484 0.94814 0.93626 0.97962 0.79592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.09 71.98 0.65 -1.40 16 2 C -0.02 -0.34 3.34 -11.54 -0.04 -0.38 16 3 C -0.14 -1.55 9.09 71.98 0.65 -0.90 16 4 C 0.02 0.53 6.00 88.57 0.53 1.06 16 5 N -0.47 -15.11 10.12 -180.83 -1.83 -16.94 16 6 C -0.01 -0.30 6.70 40.56 0.27 -0.03 16 7 C 0.58 25.45 7.76 86.62 0.67 26.12 16 8 O -0.58 -29.39 16.38 -4.13 -0.07 -29.46 16 9 N -0.67 -27.43 4.91 -445.59 -2.19 -29.62 16 10 C 0.12 5.07 2.81 45.07 0.13 5.20 16 11 H 0.07 2.91 7.58 -2.39 -0.02 2.89 16 12 C -0.11 -3.43 5.59 30.62 0.17 -3.26 16 13 C -0.12 -3.71 5.20 30.67 0.16 -3.55 16 14 C 0.15 6.14 3.50 44.98 0.16 6.30 16 15 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 16 C -0.13 -4.55 7.95 71.98 0.57 -3.98 16 17 N -0.59 -29.82 2.91 -675.23 -1.96 -31.78 16 18 C -0.23 -13.05 8.60 84.03 0.72 -12.33 16 19 H 0.07 3.83 6.21 -2.91 -0.02 3.81 16 20 C -0.05 -3.19 4.93 84.86 0.42 -2.77 16 21 N -0.93 -59.18 11.22 21.65 0.24 -58.94 16 22 Si 0.95 48.06 29.58 68.60 2.03 50.09 16 23 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.30 -15.84 7.11 99.48 0.71 -15.14 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.56 16 26 C 0.17 8.97 4.89 86.36 0.42 9.39 16 27 C -0.25 -7.64 10.62 67.12 0.71 -6.93 16 28 S 0.29 5.90 22.22 -56.49 -1.26 4.65 16 29 H 0.07 0.81 7.91 -2.39 -0.02 0.79 16 30 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.07 0.62 7.91 -2.39 -0.02 0.60 16 36 H 0.41 15.59 6.30 -92.71 -0.58 15.01 16 37 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.05 1.77 6.41 -2.39 -0.02 1.75 16 41 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.04 1.46 7.66 -2.39 -0.02 1.45 16 43 H 0.05 1.72 7.40 -2.38 -0.02 1.70 16 44 H 0.24 15.17 8.31 -92.71 -0.77 14.40 16 45 H 0.05 2.82 6.11 -2.38 -0.01 2.81 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.12 16 47 H 0.19 5.53 8.03 -2.91 -0.02 5.50 16 Total: -1.00 -76.64 384.12 1.56 -75.07 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.39 Total: 24.38 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: 6.21 Total: 12.54 kcal Atomic # 7 Polarization: -131.54 SS G_CDS: -5.74 Total: -137.27 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.07 Total: -29.46 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.26 Total: 4.65 kcal Total: -76.64 1.56 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071900668.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.030 kcal (2) G-P(sol) polarization free energy of solvation -76.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds