Wall clock time and date at job start Tue Mar 31 2020 21:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47179 * 2 1 4 4 C 1.50698 * 109.47092 * 119.99839 * 2 1 3 5 5 N 1.28645 * 124.72286 * 120.29190 * 4 2 1 6 6 C 1.33559 * 115.76851 * 180.18980 * 5 4 2 7 7 C 1.47268 * 123.14099 * 179.82953 * 6 5 4 8 8 O 1.21628 * 120.00021 * 179.72765 * 7 6 5 9 9 N 1.34775 * 120.00107 * 359.73383 * 7 6 5 10 10 C 1.46504 * 120.00114 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.52395 * 34.91808 * 10 9 7 12 12 C 1.53040 * 109.49883 * 154.99700 * 10 9 7 13 13 C 1.53031 * 109.53903 * 181.31441 * 12 10 9 14 14 C 1.53185 * 109.31745 * 298.63651 * 13 12 10 15 15 H 1.09005 * 109.58564 * 294.84722 * 14 13 12 16 16 C 1.52993 * 109.59194 * 174.56258 * 14 13 12 17 17 N 1.46933 * 108.77405 * 54.63060 * 14 13 12 18 18 C 1.36940 * 120.62932 * 126.37697 * 17 14 13 19 19 H 1.08004 * 119.99750 * 330.90227 * 18 17 14 20 20 C 1.38807 * 120.00313 * 150.90923 * 18 17 14 21 21 N 1.31618 * 120.00261 * 160.72765 * 20 18 17 22 22 Si 1.86804 * 119.99714 * 340.72628 * 20 18 17 23 23 H 1.48498 * 109.46932 * 92.33603 * 22 20 18 24 24 H 1.48497 * 109.46797 * 212.33544 * 22 20 18 25 25 H 1.48502 * 109.47149 * 332.33574 * 22 20 18 26 26 C 1.46923 * 118.73880 * 306.39572 * 17 14 13 27 27 C 1.35200 * 113.71785 * 359.55810 * 6 5 4 28 28 S 1.70769 * 124.71866 * 300.02474 * 4 2 1 29 29 H 1.08994 * 109.47307 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47099 * 300.00197 * 1 2 3 31 31 H 1.09004 * 109.46704 * 59.99830 * 1 2 3 32 32 H 1.09003 * 109.47099 * 239.99803 * 2 1 3 33 33 H 1.08993 * 109.46894 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.46560 * 299.99948 * 3 2 1 35 35 H 1.08998 * 109.47162 * 59.99410 * 3 2 1 36 36 H 0.97004 * 119.99874 * 359.97438 * 9 7 6 37 37 H 1.08999 * 109.46073 * 61.29278 * 12 10 9 38 38 H 1.09000 * 109.45964 * 301.33881 * 12 10 9 39 39 H 1.09003 * 109.50069 * 178.68023 * 13 12 10 40 40 H 1.09007 * 109.49659 * 58.58569 * 13 12 10 41 41 H 1.08999 * 109.47311 * 60.28326 * 16 14 13 42 42 H 1.09009 * 109.47278 * 180.28403 * 16 14 13 43 43 H 1.08999 * 109.47423 * 300.28096 * 16 14 13 44 44 H 0.96999 * 120.00064 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.58742 * 293.82020 * 26 17 14 46 46 H 1.08998 * 109.70152 * 173.46694 * 26 17 14 47 47 H 1.08002 * 125.59161 * 180.26772 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7794 -1.7576 1.2183 6 6 3.1171 -2.2438 2.4156 7 6 3.9623 -3.4370 2.5908 8 8 4.2388 -3.8276 3.7089 9 7 4.4297 -4.0961 1.5120 10 6 5.2701 -5.2834 1.6863 11 1 4.9408 -5.8368 2.5657 12 6 5.1559 -6.1762 0.4486 13 6 6.0078 -7.4324 0.6433 14 6 7.4754 -7.0281 0.8140 15 1 7.8394 -6.5755 -0.1084 16 6 8.3133 -8.2650 1.1438 17 7 7.5735 -6.0562 1.9117 18 6 8.4352 -6.2667 2.9550 19 1 8.6889 -7.2739 3.2509 20 6 8.9824 -5.1857 3.6322 21 7 9.4883 -5.3509 4.8360 22 14 9.0007 -3.4964 2.8351 23 1 7.7817 -2.7478 3.2336 24 1 10.2062 -2.7522 3.2801 25 1 9.0288 -3.6463 1.3579 26 6 6.7293 -4.8545 1.8688 27 6 2.6152 -1.5349 3.4517 28 16 1.6943 -0.2334 2.8350 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 4.2090 -3.7847 0.6202 37 1 5.5085 -5.6304 -0.4266 38 1 4.1144 -6.4626 0.3023 39 1 5.9076 -8.0788 -0.2286 40 1 5.6716 -7.9657 1.5326 41 1 8.2328 -8.9858 0.3302 42 1 9.3563 -7.9743 1.2698 43 1 7.9479 -8.7160 2.0664 44 1 9.8704 -4.5953 5.3094 45 1 7.0324 -4.2247 1.0324 46 1 6.8332 -4.2990 2.8009 47 1 2.7710 -1.7545 4.4976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071900669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:26 Heat of formation + Delta-G solvation = -7.103641 kcal Electronic energy + Delta-G solvation = -27530.545912 eV Core-core repulsion = 23839.225534 eV Total energy + Delta-G solvation = -3691.320379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.76050 -40.41998 -39.29341 -36.47797 -36.20961 -34.70766 -32.64135 -32.41646 -31.13223 -28.18075 -28.05912 -27.18701 -26.21968 -24.70028 -23.97122 -22.20880 -21.74190 -21.30228 -20.74816 -19.46588 -18.53632 -18.04323 -17.23657 -17.04211 -16.65023 -16.43257 -16.35411 -15.52520 -15.43940 -15.31072 -15.15583 -15.00283 -14.67931 -14.42531 -14.30146 -13.86688 -13.79109 -13.49609 -13.14502 -13.08603 -13.02474 -12.75928 -12.66079 -12.57803 -12.54882 -12.16035 -12.11740 -11.91129 -11.81382 -11.76288 -11.53281 -11.38268 -11.20298 -10.92672 -10.81868 -10.74236 -10.32698 -9.91208 -8.91091 -8.20438 -5.51590 -0.60878 0.15549 0.51066 0.80695 1.21741 1.25011 1.34658 2.01073 2.18490 2.36035 2.77580 3.04131 3.29801 3.59198 3.75181 3.96363 3.97197 4.03570 4.07168 4.12700 4.14612 4.21873 4.33362 4.45402 4.54404 4.64179 4.74781 4.77266 4.77892 4.82978 4.90487 4.92197 4.95027 4.99562 5.05569 5.11814 5.14244 5.21610 5.31625 5.33857 5.35252 5.49538 5.61260 5.87526 6.15013 6.19341 6.52568 6.88558 7.04968 7.60770 8.00816 8.99284 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015074 B = 0.003274 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.042644 B = 8550.387048 C = 9349.648522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.020 4.020 3 C -0.148 4.148 4 C 0.024 3.976 5 N -0.463 5.463 6 C -0.012 4.012 7 C 0.579 3.421 8 O -0.576 6.576 9 N -0.695 5.695 10 C 0.134 3.866 11 H 0.060 0.940 12 C -0.107 4.107 13 C -0.119 4.119 14 C 0.156 3.844 15 H 0.046 0.954 16 C -0.131 4.131 17 N -0.612 5.612 18 C -0.234 4.234 19 H 0.072 0.928 20 C -0.033 4.033 21 N -0.956 5.956 22 Si 0.936 3.064 23 H -0.304 1.304 24 H -0.307 1.307 25 H -0.255 1.255 26 C 0.123 3.877 27 C -0.249 4.249 28 S 0.298 5.702 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.418 0.582 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.258 0.742 45 H 0.030 0.970 46 H 0.033 0.967 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.783 12.461 -15.471 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.042 4.042 3 C -0.206 4.206 4 C -0.256 4.256 5 N -0.178 5.178 6 C -0.147 4.147 7 C 0.364 3.636 8 O -0.456 6.456 9 N -0.345 5.345 10 C 0.028 3.972 11 H 0.078 0.922 12 C -0.145 4.145 13 C -0.158 4.158 14 C 0.052 3.948 15 H 0.064 0.936 16 C -0.188 4.188 17 N -0.338 5.338 18 C -0.364 4.364 19 H 0.089 0.911 20 C -0.228 4.228 21 N -0.602 5.602 22 Si 0.767 3.233 23 H -0.233 1.233 24 H -0.235 1.235 25 H -0.179 1.179 26 C -0.004 4.004 27 C -0.391 4.391 28 S 0.557 5.443 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.087 0.913 36 H 0.256 0.744 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.070 0.930 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -22.867 12.762 -14.668 30.015 hybrid contribution 1.317 0.046 0.602 1.449 sum -21.550 12.808 -14.066 28.745 Atomic orbital electron populations 1.21957 0.91357 1.02822 1.04239 1.20034 0.97351 0.95726 0.91068 1.21976 1.01207 0.93168 1.04290 1.27900 0.99408 0.96328 1.01955 1.66895 1.13762 1.11922 1.25241 1.20161 1.05419 1.00152 0.88947 1.17664 0.79057 0.82338 0.84571 1.90848 1.60520 1.68286 1.25925 1.45796 1.50336 1.29018 1.09383 1.21507 0.89461 0.85796 1.00426 0.92190 1.21672 1.01639 0.95881 0.95263 1.21973 0.94346 0.96826 1.02663 1.20907 0.95037 0.89632 0.89227 0.93642 1.21754 0.99257 0.96715 1.01124 1.44579 1.43181 1.22697 1.23328 1.18939 1.18169 0.93431 1.05856 0.91055 1.25849 0.99178 1.00752 0.96981 1.69927 1.45967 1.31888 1.12462 0.86060 0.74709 0.82378 0.80171 1.23259 1.23523 1.17940 1.21569 0.90785 0.89804 0.98233 1.26906 1.04371 1.01845 1.06027 1.82289 1.42205 1.22168 0.97651 0.92640 0.91369 0.88966 0.88050 0.93201 0.88866 0.91342 0.74435 0.89907 0.89317 0.87632 0.93025 0.89558 0.94200 0.94266 0.93267 0.95183 0.94907 0.79775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.09 71.98 0.65 -0.41 16 2 C -0.02 -0.23 3.34 -11.54 -0.04 -0.27 16 3 C -0.15 -1.28 9.09 71.98 0.65 -0.63 16 4 C 0.02 0.45 6.00 88.57 0.53 0.98 16 5 N -0.46 -12.14 10.12 -180.84 -1.83 -13.97 16 6 C -0.01 -0.37 6.70 40.56 0.27 -0.10 16 7 C 0.58 22.97 7.76 86.62 0.67 23.64 16 8 O -0.58 -28.30 16.37 -4.12 -0.07 -28.37 16 9 N -0.69 -24.42 5.08 -445.58 -2.26 -26.68 16 10 C 0.13 5.23 2.60 45.07 0.12 5.35 16 11 H 0.06 2.74 7.58 -2.39 -0.02 2.72 16 12 C -0.11 -3.02 5.35 30.62 0.16 -2.86 16 13 C -0.12 -3.51 5.37 30.67 0.16 -3.35 16 14 C 0.16 5.88 3.49 44.97 0.16 6.04 16 15 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 16 C -0.13 -4.72 7.95 71.98 0.57 -4.15 16 17 N -0.61 -30.23 2.75 -675.25 -1.86 -32.08 16 18 C -0.23 -13.86 9.05 84.03 0.76 -13.10 16 19 H 0.07 4.45 6.40 -2.91 -0.02 4.44 16 20 C -0.03 -2.09 5.24 84.86 0.44 -1.64 16 21 N -0.96 -64.23 13.97 21.65 0.30 -63.93 16 22 Si 0.94 51.90 24.34 68.60 1.67 53.57 16 23 H -0.30 -17.44 6.63 99.48 0.66 -16.78 16 24 H -0.31 -16.89 7.11 99.48 0.71 -16.18 16 25 H -0.26 -13.22 6.63 99.48 0.66 -12.56 16 26 C 0.12 5.86 3.77 86.36 0.33 6.18 16 27 C -0.25 -6.61 10.62 67.12 0.71 -5.89 16 28 S 0.30 4.85 22.22 -56.49 -1.26 3.59 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.39 7.91 -2.39 -0.02 0.38 16 31 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.48 7.91 -2.39 -0.02 0.46 16 36 H 0.42 12.04 8.12 -92.71 -0.75 11.28 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.05 1.69 8.14 -2.38 -0.02 1.68 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.04 1.60 7.65 -2.38 -0.02 1.58 16 43 H 0.04 1.53 7.43 -2.39 -0.02 1.51 16 44 H 0.26 16.67 8.31 -92.71 -0.77 15.89 16 45 H 0.03 1.39 7.03 -2.39 -0.02 1.38 16 46 H 0.03 1.87 4.62 -2.39 -0.01 1.86 16 47 H 0.18 4.94 8.03 -2.91 -0.02 4.92 16 Total: -1.00 -83.24 381.22 0.99 -82.25 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.13 Total: 15.84 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 6.16 Total: 9.79 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -5.65 Total: -136.66 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.07 Total: -28.37 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.67 Total: 53.57 kcal Atomic # 16 Polarization: 4.85 SS G_CDS: -1.26 Total: 3.59 kcal Total: -83.24 0.99 -82.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071900669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.144 kcal (2) G-P(sol) polarization free energy of solvation -83.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds