Wall clock time and date at job start Tue Mar 31 2020 21:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 C 1.50705 * 109.47160 * 120.00599 * 2 1 3 5 5 S 1.70940 * 125.58028 * 307.12897 * 4 2 1 6 6 C 1.70772 * 91.12681 * 180.02562 * 5 4 2 7 7 N 1.28652 * 110.55895 * 359.76119 * 6 5 4 8 8 C 1.33561 * 115.76621 * 0.42818 * 7 6 5 9 9 C 1.47262 * 123.14398 * 179.82653 * 8 7 6 10 10 O 1.21632 * 120.00489 * 178.08654 * 9 8 7 11 11 N 1.34781 * 120.00161 * 358.07722 * 9 8 7 12 12 C 1.46487 * 120.00341 * 180.27345 * 11 9 8 13 13 H 1.08999 * 109.49864 * 34.66614 * 12 11 9 14 14 C 1.53043 * 109.49914 * 154.72933 * 12 11 9 15 15 C 1.53037 * 109.53675 * 58.58872 * 14 12 11 16 16 C 1.53192 * 109.31350 * 61.36516 * 15 14 12 17 17 H 1.09001 * 109.58574 * 65.29750 * 16 15 14 18 18 C 1.53004 * 109.58851 * 185.57625 * 16 15 14 19 19 N 1.46919 * 108.77747 * 305.36658 * 16 15 14 20 20 C 1.36940 * 120.63332 * 233.58541 * 19 16 15 21 21 H 1.07998 * 119.99844 * 30.14449 * 20 19 16 22 22 C 1.38809 * 120.00100 * 210.14761 * 20 19 16 23 23 N 1.31621 * 120.00354 * 17.82145 * 22 20 19 24 24 Si 1.86798 * 119.99980 * 197.82236 * 22 20 19 25 25 H 1.48499 * 109.47405 * 94.98404 * 24 22 20 26 26 H 1.48507 * 109.47373 * 214.98527 * 24 22 20 27 27 H 1.48503 * 109.47222 * 334.98049 * 24 22 20 28 28 C 1.46926 * 118.74018 * 53.60580 * 19 16 15 29 29 H 1.09004 * 109.47092 * 299.99930 * 1 2 3 30 30 H 1.09007 * 109.47236 * 59.99512 * 1 2 3 31 31 H 1.08994 * 109.47619 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47092 * 240.00070 * 2 1 3 33 33 H 1.09002 * 109.47313 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47272 * 299.99927 * 3 2 1 35 35 H 1.08998 * 109.46929 * 60.00410 * 3 2 1 36 36 H 1.07995 * 124.72395 * 180.02562 * 6 5 4 37 37 H 0.97004 * 119.99623 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46229 * 178.60726 * 14 12 11 39 39 H 1.09003 * 109.45818 * 298.58302 * 14 12 11 40 40 H 1.08999 * 109.50085 * 181.32058 * 15 14 12 41 41 H 1.09001 * 109.49910 * 301.41981 * 15 14 12 42 42 H 1.09000 * 109.46796 * 60.00577 * 18 16 15 43 43 H 1.08997 * 109.46816 * 180.02562 * 18 16 15 44 44 H 1.08994 * 109.47101 * 300.00103 * 18 16 15 45 45 H 0.96993 * 120.00537 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.58899 * 186.60592 * 28 19 16 47 47 H 1.09001 * 109.58679 * 66.17718 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 16 1.5727 -0.3595 2.8390 6 6 2.5925 -1.5928 3.4352 7 7 3.1966 -2.1869 2.4671 8 6 2.9207 -1.7297 1.2429 9 6 3.5231 -2.2876 0.0204 10 8 3.2045 -1.8502 -1.0689 11 7 4.4277 -3.2829 0.1085 12 6 5.0314 -3.8338 -1.1072 13 1 5.1576 -3.0395 -1.8428 14 6 6.3958 -4.4398 -0.7705 15 6 6.2236 -5.5324 0.2871 16 6 5.3266 -6.6415 -0.2715 17 1 5.8277 -7.1309 -1.1067 18 6 5.0367 -7.6680 0.8254 19 7 4.0661 -6.0433 -0.7318 20 6 2.8630 -6.5205 -0.2845 21 1 2.7873 -6.9550 0.7013 22 6 1.7408 -6.4458 -1.0981 23 7 1.8783 -6.2538 -2.3930 24 14 0.0355 -6.6176 -0.3553 25 1 -0.5182 -5.2697 -0.0698 26 1 -0.8525 -7.3249 -1.3127 27 1 0.1215 -7.3951 0.9070 28 6 4.1208 -4.9237 -1.6817 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 2.7104 -1.8424 4.4793 37 1 4.6816 -3.6319 0.9772 38 1 6.8335 -4.8715 -1.6707 39 1 7.0536 -3.6612 -0.3843 40 1 7.1984 -5.9474 0.5435 41 1 5.7631 -5.1066 1.1785 42 1 4.5311 -7.1778 1.6573 43 1 4.3988 -8.4563 0.4257 44 1 5.9740 -8.1014 1.1742 45 1 1.0942 -6.2012 -2.9614 46 1 3.1188 -4.5215 -1.8306 47 1 4.5226 -5.2712 -2.6334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071985656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:32 Heat of formation + Delta-G solvation = 18.845966 kcal Electronic energy + Delta-G solvation = -28815.739252 eV Core-core repulsion = 25125.544133 eV Total energy + Delta-G solvation = -3690.195119 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.38559 -38.74526 -37.32493 -35.69430 -34.00622 -32.66379 -30.80078 -29.89728 -29.49412 -27.16641 -26.39887 -25.48593 -24.80414 -22.63063 -22.12450 -21.40523 -20.41943 -19.63863 -18.70991 -17.87470 -16.57505 -16.26385 -15.55733 -15.25356 -15.12692 -14.65903 -14.20148 -14.03048 -13.91057 -13.72790 -13.61737 -13.39620 -13.07349 -13.01699 -12.74333 -12.45674 -12.25464 -12.03516 -11.83454 -11.46860 -11.22652 -11.22224 -11.11429 -11.01965 -10.90123 -10.77794 -10.69324 -10.31996 -10.27215 -9.91974 -9.75171 -9.48980 -9.40994 -9.38386 -9.15158 -8.86463 -8.39568 -8.28163 -6.54110 -5.70898 -3.13476 0.64354 1.28855 1.69838 2.25099 3.40862 3.48019 3.48621 3.71508 3.91192 4.28678 4.54855 4.72872 4.92282 5.14065 5.17034 5.35818 5.40527 5.42845 5.50456 5.56205 5.56880 5.59077 5.65231 5.78108 5.90105 5.99429 6.06277 6.08435 6.17019 6.20326 6.25677 6.37928 6.40294 6.45607 6.51330 6.57903 6.67209 6.76343 6.96358 7.10998 7.19487 7.40533 7.51370 7.69523 7.90247 8.19364 8.54065 8.80067 9.28361 9.93167 10.50069 11.37356 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004895 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.506035 B = 5718.964143 C = 6502.659889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.052 4.052 3 C -0.137 4.137 4 C -0.168 4.168 5 S 0.177 5.823 6 C -0.009 4.009 7 N -0.431 5.431 8 C 0.006 3.994 9 C 0.593 3.407 10 O -0.539 6.539 11 N -0.678 5.678 12 C 0.116 3.884 13 H 0.077 0.923 14 C -0.118 4.118 15 C -0.132 4.132 16 C 0.166 3.834 17 H 0.025 0.975 18 C -0.135 4.135 19 N -0.581 5.581 20 C -0.247 4.247 21 H 0.067 0.933 22 C 0.008 3.992 23 N -0.897 5.897 24 Si 0.892 3.108 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.164 3.836 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.201 0.799 37 H 0.404 0.596 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.252 0.748 46 H 0.091 0.909 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 12.961 9.879 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.292 4.292 5 S 0.433 5.567 6 C -0.309 4.309 7 N -0.145 5.145 8 C -0.128 4.128 9 C 0.376 3.624 10 O -0.418 6.418 11 N -0.327 5.327 12 C 0.011 3.989 13 H 0.095 0.905 14 C -0.156 4.156 15 C -0.171 4.171 16 C 0.060 3.940 17 H 0.042 0.958 18 C -0.193 4.193 19 N -0.304 5.304 20 C -0.377 4.377 21 H 0.084 0.916 22 C -0.191 4.191 23 N -0.541 5.541 24 Si 0.722 3.278 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.037 3.963 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.156 0.844 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.218 0.782 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.804 13.433 9.595 16.744 hybrid contribution -0.492 -0.787 0.218 0.953 sum 2.312 12.646 9.813 16.173 Atomic orbital electron populations 1.21913 0.94042 1.02502 1.01774 1.20300 0.95734 0.95763 0.95411 1.21832 1.01407 0.94548 1.01728 1.25611 1.01394 1.01285 1.00926 1.82627 1.42523 1.34574 0.96987 1.28263 1.00229 0.98842 1.03524 1.66944 1.23343 1.26034 0.98200 1.20511 1.01791 0.97981 0.92540 1.16901 0.79340 0.79946 0.86175 1.90621 1.61763 1.62087 1.27355 1.45690 1.41370 1.34828 1.10840 1.21846 0.93454 0.97243 0.86392 0.90509 1.21683 0.95958 0.97945 1.00002 1.22077 0.99323 0.97584 0.98127 1.20452 0.88101 0.91175 0.94304 0.95790 1.21789 0.99449 0.99278 0.98752 1.44012 1.00377 1.33928 1.52082 1.19062 0.85389 1.36229 0.96975 0.91586 1.25018 0.98333 1.01049 0.94744 1.70016 1.28343 1.53324 1.02418 0.86435 0.85379 0.77578 0.78396 1.21715 1.21831 1.20471 1.21128 0.99313 0.85569 0.90245 0.93034 0.91587 0.92116 0.84391 0.92459 0.91697 0.93102 0.78223 0.75914 0.91035 0.93031 0.92864 0.92495 0.92921 0.92104 0.94476 0.93789 0.89071 0.95513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.02 37.16 0.34 -1.50 16 2 C -0.05 -0.74 3.10 -91.77 -0.28 -1.03 16 3 C -0.14 -1.57 9.17 37.16 0.34 -1.23 16 4 C -0.17 -2.56 5.05 -35.39 -0.18 -2.73 16 5 S 0.18 1.98 22.38 -107.50 -2.41 -0.42 16 6 C -0.01 -0.11 12.17 51.43 0.63 0.52 16 7 N -0.43 -6.98 10.12 -12.36 -0.13 -7.10 16 8 C 0.01 0.10 6.70 -84.53 -0.57 -0.46 16 9 C 0.59 12.05 7.77 -12.59 -0.10 11.95 16 10 O -0.54 -11.93 13.51 5.25 0.07 -11.86 16 11 N -0.68 -13.23 4.91 -54.82 -0.27 -13.50 16 12 C 0.12 2.29 2.81 -67.81 -0.19 2.10 16 13 H 0.08 1.51 7.57 -51.93 -0.39 1.12 16 14 C -0.12 -1.94 5.59 -26.69 -0.15 -2.08 16 15 C -0.13 -2.21 5.21 -26.61 -0.14 -2.35 16 16 C 0.17 3.38 3.50 -67.60 -0.24 3.14 16 17 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 18 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 19 N -0.58 -14.14 2.90 -164.78 -0.48 -14.62 16 20 C -0.25 -6.69 8.55 -15.06 -0.13 -6.82 16 21 H 0.07 1.78 6.25 -52.49 -0.33 1.45 16 22 C 0.01 0.22 4.87 -17.43 -0.08 0.13 16 23 N -0.90 -26.68 11.41 55.49 0.63 -26.04 16 24 Si 0.89 22.59 29.59 -169.99 -5.03 17.57 16 25 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.16 3.97 4.90 -3.71 -0.02 3.95 16 29 H 0.05 0.55 7.79 -51.93 -0.40 0.15 16 30 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.14 2.44 4.97 -51.93 -0.26 2.18 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.20 1.64 8.06 -52.49 -0.42 1.21 16 37 H 0.40 7.61 6.29 -40.82 -0.26 7.36 16 38 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.98 6.40 -51.93 -0.33 0.65 16 42 H 0.05 1.01 7.40 -51.93 -0.38 0.63 16 43 H 0.06 1.25 7.67 -51.93 -0.40 0.85 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.09 2.59 6.25 -51.93 -0.32 2.27 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 379.03 15.07 5.71 5.71 Total: -1.00 -31.75 379.03 -9.66 -41.40 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -7.29 Total: 7.52 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.48 Total: 1.34 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.24 Total: -61.26 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.07 Total: -11.86 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.03 Total: 17.57 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.41 Total: -0.42 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.75 -9.66 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.251 kcal (2) G-P(sol) polarization free energy of solvation -31.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds