Wall clock time and date at job start Tue Mar 31 2020 21:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47372 * 2 1 4 4 C 1.50705 * 109.47160 * 120.00599 * 2 1 3 5 5 S 1.70940 * 125.58028 * 307.12897 * 4 2 1 6 6 C 1.70772 * 91.12681 * 180.02562 * 5 4 2 7 7 N 1.28652 * 110.55895 * 359.76119 * 6 5 4 8 8 C 1.33561 * 115.76621 * 0.42818 * 7 6 5 9 9 C 1.47262 * 123.14398 * 179.82653 * 8 7 6 10 10 O 1.21632 * 120.00489 * 178.08654 * 9 8 7 11 11 N 1.34781 * 120.00161 * 358.07722 * 9 8 7 12 12 C 1.46487 * 120.00341 * 180.27345 * 11 9 8 13 13 H 1.08999 * 109.49864 * 34.66614 * 12 11 9 14 14 C 1.53043 * 109.49914 * 154.72933 * 12 11 9 15 15 C 1.53037 * 109.53675 * 58.58872 * 14 12 11 16 16 C 1.53192 * 109.31350 * 61.36516 * 15 14 12 17 17 H 1.09001 * 109.58574 * 65.29750 * 16 15 14 18 18 C 1.53004 * 109.58851 * 185.57625 * 16 15 14 19 19 N 1.46919 * 108.77747 * 305.36658 * 16 15 14 20 20 C 1.36940 * 120.63332 * 233.58541 * 19 16 15 21 21 H 1.07998 * 119.99844 * 30.14449 * 20 19 16 22 22 C 1.38809 * 120.00100 * 210.14761 * 20 19 16 23 23 N 1.31621 * 120.00354 * 17.82145 * 22 20 19 24 24 Si 1.86798 * 119.99980 * 197.82236 * 22 20 19 25 25 H 1.48499 * 109.47405 * 94.98404 * 24 22 20 26 26 H 1.48507 * 109.47373 * 214.98527 * 24 22 20 27 27 H 1.48503 * 109.47222 * 334.98049 * 24 22 20 28 28 C 1.46926 * 118.74018 * 53.60580 * 19 16 15 29 29 H 1.09004 * 109.47092 * 299.99930 * 1 2 3 30 30 H 1.09007 * 109.47236 * 59.99512 * 1 2 3 31 31 H 1.08994 * 109.47619 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47092 * 240.00070 * 2 1 3 33 33 H 1.09002 * 109.47313 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47272 * 299.99927 * 3 2 1 35 35 H 1.08998 * 109.46929 * 60.00410 * 3 2 1 36 36 H 1.07995 * 124.72395 * 180.02562 * 6 5 4 37 37 H 0.97004 * 119.99623 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.46229 * 178.60726 * 14 12 11 39 39 H 1.09003 * 109.45818 * 298.58302 * 14 12 11 40 40 H 1.08999 * 109.50085 * 181.32058 * 15 14 12 41 41 H 1.09001 * 109.49910 * 301.41981 * 15 14 12 42 42 H 1.09000 * 109.46796 * 60.00577 * 18 16 15 43 43 H 1.08997 * 109.46816 * 180.02562 * 18 16 15 44 44 H 1.08994 * 109.47101 * 300.00103 * 18 16 15 45 45 H 0.96993 * 120.00537 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.58899 * 186.60592 * 28 19 16 47 47 H 1.09001 * 109.58679 * 66.17718 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 16 1.5727 -0.3595 2.8390 6 6 2.5925 -1.5928 3.4352 7 7 3.1966 -2.1869 2.4671 8 6 2.9207 -1.7297 1.2429 9 6 3.5231 -2.2876 0.0204 10 8 3.2045 -1.8502 -1.0689 11 7 4.4277 -3.2829 0.1085 12 6 5.0314 -3.8338 -1.1072 13 1 5.1576 -3.0395 -1.8428 14 6 6.3958 -4.4398 -0.7705 15 6 6.2236 -5.5324 0.2871 16 6 5.3266 -6.6415 -0.2715 17 1 5.8277 -7.1309 -1.1067 18 6 5.0367 -7.6680 0.8254 19 7 4.0661 -6.0433 -0.7318 20 6 2.8630 -6.5205 -0.2845 21 1 2.7873 -6.9550 0.7013 22 6 1.7408 -6.4458 -1.0981 23 7 1.8783 -6.2538 -2.3930 24 14 0.0355 -6.6176 -0.3553 25 1 -0.5182 -5.2697 -0.0698 26 1 -0.8525 -7.3249 -1.3127 27 1 0.1215 -7.3951 0.9070 28 6 4.1208 -4.9237 -1.6817 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 2.7104 -1.8424 4.4793 37 1 4.6816 -3.6319 0.9772 38 1 6.8335 -4.8715 -1.6707 39 1 7.0536 -3.6612 -0.3843 40 1 7.1984 -5.9474 0.5435 41 1 5.7631 -5.1066 1.1785 42 1 4.5311 -7.1778 1.6573 43 1 4.3988 -8.4563 0.4257 44 1 5.9740 -8.1014 1.1742 45 1 1.0942 -6.2012 -2.9614 46 1 3.1188 -4.5215 -1.8306 47 1 4.5226 -5.2712 -2.6334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071985656.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:31 Heat of formation + Delta-G solvation = -1.777190 kcal Electronic energy + Delta-G solvation = -28816.633539 eV Core-core repulsion = 25125.544133 eV Total energy + Delta-G solvation = -3691.089406 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69025 -40.20688 -38.88801 -36.81251 -35.69970 -34.50450 -32.34215 -31.78954 -30.67716 -28.13226 -27.98833 -27.07121 -26.33354 -24.06915 -23.76458 -22.48129 -22.06899 -21.01047 -20.39544 -19.03611 -18.17849 -17.86724 -17.04934 -16.83867 -16.44588 -16.17492 -15.83411 -15.55562 -15.24982 -15.18258 -14.98064 -14.73196 -14.58797 -14.37681 -14.05616 -14.01810 -13.69307 -13.15835 -13.06387 -13.02505 -12.90578 -12.68835 -12.59059 -12.48215 -12.44243 -12.27002 -12.19337 -12.13086 -12.03637 -11.60335 -11.23174 -11.08085 -10.79828 -10.62315 -10.52750 -10.38760 -10.10367 -9.77493 -8.58316 -7.84965 -5.28772 -0.44577 0.29054 0.65829 1.03023 1.34285 1.37481 1.44533 2.28814 2.45925 2.50058 3.19958 3.29859 3.61582 3.62447 3.84463 3.97670 4.07627 4.12735 4.14064 4.16422 4.35932 4.46622 4.54101 4.62010 4.67153 4.71376 4.79641 4.82748 4.85919 4.91828 4.93593 5.02468 5.06021 5.08371 5.11667 5.23998 5.26651 5.29875 5.38444 5.54502 5.58602 5.68142 5.70653 5.75160 6.37714 6.42417 6.73153 7.16683 7.29461 7.90986 8.42367 9.20295 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.004895 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.506035 B = 5718.964143 C = 6502.659889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.058 4.058 3 C -0.129 4.129 4 C -0.190 4.190 5 S 0.273 5.727 6 C -0.009 4.009 7 N -0.464 5.464 8 C -0.029 4.029 9 C 0.581 3.419 10 O -0.572 6.572 11 N -0.676 5.676 12 C 0.125 3.875 13 H 0.070 0.930 14 C -0.110 4.110 15 C -0.120 4.120 16 C 0.155 3.845 17 H 0.018 0.982 18 C -0.127 4.127 19 N -0.593 5.593 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.051 4.051 23 N -0.932 5.932 24 Si 0.944 3.056 25 H -0.301 1.301 26 H -0.295 1.295 27 H -0.262 1.262 28 C 0.175 3.825 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.242 0.758 37 H 0.409 0.591 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.076 0.924 45 H 0.243 0.757 46 H 0.041 0.959 47 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 14.262 13.565 20.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.078 4.078 3 C -0.187 4.187 4 C -0.314 4.314 5 S 0.529 5.471 6 C -0.308 4.308 7 N -0.179 5.179 8 C -0.163 4.163 9 C 0.366 3.634 10 O -0.453 6.453 11 N -0.325 5.325 12 C 0.019 3.981 13 H 0.088 0.912 14 C -0.147 4.147 15 C -0.159 4.159 16 C 0.050 3.950 17 H 0.036 0.964 18 C -0.184 4.184 19 N -0.317 5.317 20 C -0.365 4.365 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.579 5.579 24 Si 0.774 3.226 25 H -0.230 1.230 26 H -0.222 1.222 27 H -0.186 1.186 28 C 0.048 3.952 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.246 0.754 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 3.667 14.722 13.331 20.197 hybrid contribution -0.759 -1.149 -0.860 1.624 sum 2.908 13.573 12.471 18.660 Atomic orbital electron populations 1.21893 0.92820 1.01303 1.03760 1.20249 0.96716 0.97036 0.93841 1.21780 1.00698 0.92724 1.03495 1.25934 1.00849 1.00710 1.03957 1.82208 1.40082 1.32343 0.92435 1.29015 0.98974 0.98223 1.04595 1.66910 1.25259 1.27606 0.98104 1.20254 1.03842 0.99833 0.92385 1.17500 0.79030 0.79808 0.87090 1.90611 1.62643 1.63073 1.28995 1.45646 1.41436 1.34764 1.10636 1.21590 0.94373 0.95498 0.86637 0.91233 1.21662 0.93910 0.98627 1.00546 1.21956 1.00163 0.96136 0.97612 1.20759 0.86735 0.92860 0.94672 0.96442 1.21708 1.00964 0.98049 0.97715 1.44214 1.01294 1.34324 1.51824 1.19335 0.86500 1.34019 0.96675 0.91242 1.25672 1.01394 1.02445 0.95107 1.70166 1.28312 1.55883 1.03564 0.85576 0.81925 0.76849 0.78252 1.22959 1.22173 1.18634 1.20801 0.97502 0.86927 0.89958 0.90366 0.90299 0.94817 0.88586 0.93529 0.90524 0.90690 0.74182 0.75410 0.90312 0.89908 0.89005 0.92592 0.93476 0.94570 0.90483 0.94789 0.94037 0.97985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.02 71.98 0.65 -2.82 16 2 C -0.06 -1.68 3.10 -11.54 -0.04 -1.71 16 3 C -0.13 -2.81 9.17 71.98 0.66 -2.15 16 4 C -0.19 -5.66 5.05 24.99 0.13 -5.54 16 5 S 0.27 5.20 22.38 -56.49 -1.26 3.93 16 6 C -0.01 -0.19 12.17 130.71 1.59 1.40 16 7 N -0.46 -14.48 10.12 -193.03 -1.95 -16.43 16 8 C -0.03 -1.05 6.70 40.55 0.27 -0.78 16 9 C 0.58 24.78 7.77 86.61 0.67 25.45 16 10 O -0.57 -27.33 13.51 -4.13 -0.06 -27.39 16 11 N -0.68 -27.05 4.91 -445.59 -2.19 -29.24 16 12 C 0.13 5.07 2.81 45.07 0.13 5.20 16 13 H 0.07 2.90 7.57 -2.39 -0.02 2.88 16 14 C -0.11 -3.41 5.59 30.62 0.17 -3.24 16 15 C -0.12 -3.70 5.21 30.67 0.16 -3.54 16 16 C 0.15 6.15 3.50 44.98 0.16 6.31 16 17 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 18 C -0.13 -4.56 7.95 71.98 0.57 -3.99 16 19 N -0.59 -29.59 2.90 -675.23 -1.96 -31.55 16 20 C -0.23 -13.03 8.55 84.03 0.72 -12.31 16 21 H 0.07 3.77 6.25 -2.91 -0.02 3.75 16 22 C -0.05 -3.00 4.87 84.86 0.41 -2.59 16 23 N -0.93 -58.73 11.41 21.65 0.25 -58.48 16 24 Si 0.94 48.05 29.59 68.60 2.03 50.08 16 25 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 26 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 27 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 28 C 0.18 8.97 4.90 86.36 0.42 9.39 16 29 H 0.08 1.48 7.79 -2.38 -0.02 1.46 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.10 3.66 4.97 -2.38 -0.01 3.65 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.24 2.80 8.06 -2.91 -0.02 2.78 16 37 H 0.41 15.36 6.29 -92.70 -0.58 14.78 16 38 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 1.77 6.40 -2.39 -0.02 1.76 16 42 H 0.05 1.73 7.40 -2.39 -0.02 1.71 16 43 H 0.04 1.45 7.67 -2.39 -0.02 1.43 16 44 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 46 H 0.04 2.53 6.25 -2.39 -0.01 2.52 16 47 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -75.95 379.03 1.93 -74.02 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.40 Total: 25.99 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 6.68 Total: 9.06 kcal Atomic # 7 Polarization: -129.85 SS G_CDS: -5.85 Total: -135.70 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.06 Total: -27.39 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.26 Total: 3.93 kcal Total: -75.95 1.93 -74.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985656.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.239 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds