Wall clock time and date at job start Tue Mar 31 2020 21:23:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47087 * 2 1 4 4 C 1.50703 * 109.46957 * 119.99967 * 2 1 3 5 5 S 1.70947 * 125.58355 * 307.07399 * 4 2 1 6 6 C 1.70770 * 91.12390 * 180.19967 * 5 4 2 7 7 N 1.28639 * 110.56371 * 359.80512 * 6 5 4 8 8 C 1.33560 * 115.76415 * 0.02562 * 7 6 5 9 9 C 1.47270 * 123.13960 * 179.97438 * 8 7 6 10 10 O 1.21636 * 119.99966 * 176.46532 * 9 8 7 11 11 N 1.34784 * 120.00191 * 356.47242 * 9 8 7 12 12 C 1.46499 * 120.00119 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.52436 * 325.08431 * 12 11 9 14 14 C 1.53030 * 109.49791 * 204.99764 * 12 11 9 15 15 C 1.53038 * 109.54032 * 301.41792 * 14 12 11 16 16 C 1.53195 * 109.31012 * 298.63104 * 15 14 12 17 17 H 1.08999 * 109.58805 * 294.84873 * 16 15 14 18 18 C 1.52995 * 109.58762 * 174.56396 * 16 15 14 19 19 N 1.46930 * 108.77288 * 54.63566 * 16 15 14 20 20 C 1.36939 * 120.62708 * 126.37074 * 19 16 15 21 21 H 1.07995 * 120.00044 * 328.24395 * 20 19 16 22 22 C 1.38811 * 119.99641 * 148.25293 * 20 19 16 23 23 N 1.31625 * 120.00048 * 166.93841 * 22 20 19 24 24 Si 1.86802 * 120.00318 * 346.93259 * 22 20 19 25 25 H 1.48498 * 109.46956 * 85.90176 * 24 22 20 26 26 H 1.48500 * 109.47245 * 205.90179 * 24 22 20 27 27 H 1.48501 * 109.46757 * 325.90410 * 24 22 20 28 28 C 1.46926 * 118.74062 * 306.39274 * 19 16 15 29 29 H 1.09000 * 109.47288 * 60.00180 * 1 2 3 30 30 H 1.09003 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47528 * 300.00223 * 1 2 3 32 32 H 1.08993 * 109.47333 * 239.99657 * 2 1 3 33 33 H 1.08999 * 109.46994 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46881 * 299.99521 * 3 2 1 35 35 H 1.09002 * 109.47119 * 59.99526 * 3 2 1 36 36 H 1.08011 * 124.71693 * 179.84374 * 6 5 4 37 37 H 0.96994 * 119.99670 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.46215 * 181.39514 * 14 12 11 39 39 H 1.09008 * 109.45982 * 61.43590 * 14 12 11 40 40 H 1.08998 * 109.50046 * 178.68654 * 15 14 12 41 41 H 1.08991 * 109.49925 * 58.58106 * 15 14 12 42 42 H 1.09003 * 109.47086 * 60.28504 * 18 16 15 43 43 H 1.09001 * 109.47439 * 180.28773 * 18 16 15 44 44 H 1.09004 * 109.47111 * 300.28908 * 18 16 15 45 45 H 0.96997 * 120.00210 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.58094 * 293.81833 * 28 19 16 47 47 H 1.08997 * 109.70455 * 173.46553 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 16 1.5736 -0.3584 2.8392 6 6 2.5966 -1.5888 3.4357 7 7 3.2016 -2.1822 2.4678 8 6 2.9176 -1.7321 1.2429 9 6 3.5173 -2.2926 0.0201 10 8 3.1697 -1.8823 -1.0709 11 7 4.4513 -3.2602 0.1100 12 6 5.0474 -3.8182 -1.1063 13 1 4.2976 -3.8528 -1.8967 14 6 5.5567 -5.2331 -0.8229 15 6 6.5856 -5.1896 0.3092 16 6 7.7749 -4.3247 -0.1201 17 1 8.2888 -4.7991 -0.9561 18 6 8.7434 -4.1654 1.0536 19 7 7.2758 -3.0059 -0.5330 20 6 7.7856 -1.8622 0.0213 21 1 8.1336 -1.8663 1.0436 22 6 7.8547 -0.6976 -0.7308 23 7 8.0972 0.4536 -0.1406 24 14 7.6038 -0.7640 -2.5807 25 1 6.1529 -0.6837 -2.8866 26 1 8.3079 0.3782 -3.2171 27 1 8.1513 -2.0394 -3.1089 28 6 6.2192 -2.9376 -1.5516 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6766 1.9564 0.8900 36 1 2.7183 -1.8350 4.4803 37 1 4.7286 -3.5872 0.9801 38 1 6.0223 -5.6383 -1.7213 39 1 4.7206 -5.8681 -0.5295 40 1 6.9306 -6.2005 0.5264 41 1 6.1275 -4.7616 1.2008 42 1 9.1063 -5.1463 1.3609 43 1 9.5862 -3.5456 0.7477 44 1 8.2276 -3.6910 1.8884 45 1 8.1459 1.2674 -0.6661 46 1 6.6063 -3.2989 -2.5044 47 1 5.8809 -1.9073 -1.6617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071985661.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:34 Heat of formation + Delta-G solvation = 1.637547 kcal Electronic energy + Delta-G solvation = -28914.620478 eV Core-core repulsion = 25223.679146 eV Total energy + Delta-G solvation = -3690.941332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75172 -40.35572 -39.01199 -36.84125 -35.78153 -34.51991 -32.62882 -32.41392 -30.70963 -28.15001 -28.12489 -27.00368 -26.32100 -24.50913 -23.83520 -22.49452 -22.03722 -21.09015 -20.54377 -19.06570 -18.39685 -17.96633 -17.26495 -16.87081 -16.55046 -16.45945 -16.03023 -15.56918 -15.37532 -15.19573 -15.03194 -14.83649 -14.69814 -14.40670 -14.25880 -14.02903 -13.92027 -13.47961 -13.27823 -13.16827 -13.07020 -12.67467 -12.55161 -12.48691 -12.40612 -12.27625 -12.22331 -12.08455 -11.82447 -11.68720 -11.38384 -11.17180 -10.81351 -10.72457 -10.64798 -10.39670 -10.16248 -9.81422 -8.77908 -8.14781 -5.49510 -0.45738 0.28695 0.65115 0.99496 1.26835 1.29137 1.37745 2.21245 2.39041 2.44858 3.08675 3.17455 3.28911 3.59869 3.81837 3.86406 3.97420 4.08832 4.10350 4.12538 4.27266 4.33585 4.49246 4.52756 4.54207 4.63910 4.65872 4.75582 4.80988 4.82443 4.85864 4.90038 4.97481 4.99699 5.06134 5.09745 5.16179 5.23261 5.25611 5.34043 5.49922 5.60555 5.63419 5.93280 6.19021 6.33595 6.66743 6.94937 7.20830 7.65771 8.06946 9.04805 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011830 B = 0.004875 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.379862 B = 5742.246621 C = 6452.208671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C -0.138 4.138 4 C -0.190 4.190 5 S 0.275 5.725 6 C -0.010 4.010 7 N -0.465 5.465 8 C -0.031 4.031 9 C 0.583 3.417 10 O -0.572 6.572 11 N -0.680 5.680 12 C 0.129 3.871 13 H 0.081 0.919 14 C -0.109 4.109 15 C -0.123 4.123 16 C 0.160 3.840 17 H 0.042 0.958 18 C -0.128 4.128 19 N -0.609 5.609 20 C -0.218 4.218 21 H 0.063 0.937 22 C -0.036 4.036 23 N -0.962 5.962 24 Si 0.939 3.061 25 H -0.294 1.294 26 H -0.316 1.316 27 H -0.257 1.257 28 C 0.107 3.893 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.023 0.977 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.242 0.758 37 H 0.410 0.590 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.255 0.745 46 H 0.039 0.961 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.090 -8.140 6.734 19.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.077 4.077 3 C -0.196 4.196 4 C -0.315 4.315 5 S 0.532 5.468 6 C -0.309 4.309 7 N -0.179 5.179 8 C -0.165 4.165 9 C 0.369 3.631 10 O -0.453 6.453 11 N -0.329 5.329 12 C 0.023 3.977 13 H 0.099 0.901 14 C -0.147 4.147 15 C -0.162 4.162 16 C 0.055 3.945 17 H 0.060 0.940 18 C -0.186 4.186 19 N -0.334 5.334 20 C -0.348 4.348 21 H 0.081 0.919 22 C -0.229 4.229 23 N -0.610 5.610 24 Si 0.771 3.229 25 H -0.223 1.223 26 H -0.245 1.245 27 H -0.181 1.181 28 C -0.019 4.019 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.258 0.742 37 H 0.248 0.752 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -16.511 -7.543 6.582 19.309 hybrid contribution 1.064 0.313 -1.440 1.818 sum -15.447 -7.229 5.142 17.813 Atomic orbital electron populations 1.21846 0.91190 1.02404 1.03602 1.20245 0.97805 0.95726 0.93886 1.21842 0.99664 0.94479 1.03591 1.25939 1.01439 1.00083 1.03991 1.82201 1.39514 1.32609 0.92467 1.28996 0.99006 0.98308 1.04609 1.66889 1.23689 1.29240 0.98084 1.20242 1.03190 1.00638 0.92427 1.17494 0.79319 0.79201 0.87125 1.90600 1.64564 1.61336 1.28832 1.45691 1.38620 1.37835 1.10738 1.21494 0.94275 0.94818 0.87149 0.90055 1.21692 0.99568 0.92820 1.00620 1.21984 0.95939 1.00694 0.97602 1.20827 0.93601 0.84426 0.95627 0.94044 1.21722 0.98433 1.01152 0.97282 1.44490 1.39913 1.02504 1.46484 1.18777 1.33587 0.87312 0.95150 0.91906 1.25880 1.00556 0.95853 1.00657 1.69884 1.56672 0.98305 1.36116 0.86092 0.76083 0.76538 0.84161 1.22258 1.24515 1.18105 1.21807 0.89555 0.98592 0.91992 0.90414 0.92636 0.90799 0.88290 0.95810 0.90276 0.90598 0.74241 0.75248 0.89131 0.89468 0.88349 0.92973 0.89964 0.94548 0.94337 0.93609 0.94369 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.02 71.98 0.65 -2.12 16 2 C -0.06 -1.66 3.10 -11.54 -0.04 -1.70 16 3 C -0.14 -3.91 9.17 71.98 0.66 -3.25 16 4 C -0.19 -5.83 5.04 24.99 0.13 -5.70 16 5 S 0.28 5.57 22.38 -56.49 -1.26 4.31 16 6 C -0.01 -0.23 12.17 130.71 1.59 1.36 16 7 N -0.46 -14.91 10.13 -193.03 -1.95 -16.87 16 8 C -0.03 -1.14 6.70 40.56 0.27 -0.86 16 9 C 0.58 24.51 7.76 86.62 0.67 25.18 16 10 O -0.57 -26.49 13.52 -4.14 -0.06 -26.55 16 11 N -0.68 -26.24 4.91 -445.58 -2.19 -28.43 16 12 C 0.13 4.73 2.81 45.07 0.13 4.85 16 13 H 0.08 2.98 7.58 -2.39 -0.02 2.96 16 14 C -0.11 -2.94 5.58 30.62 0.17 -2.77 16 15 C -0.12 -3.45 5.21 30.67 0.16 -3.29 16 16 C 0.16 5.79 3.49 44.97 0.16 5.95 16 17 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 18 C -0.13 -4.54 7.97 71.98 0.57 -3.97 16 19 N -0.61 -28.46 2.66 -675.23 -1.80 -30.26 16 20 C -0.22 -12.45 9.02 84.03 0.76 -11.69 16 21 H 0.06 3.87 6.50 -2.91 -0.02 3.85 16 22 C -0.04 -2.20 5.34 84.86 0.45 -1.74 16 23 N -0.96 -63.32 13.97 21.65 0.30 -63.02 16 24 Si 0.94 51.10 24.24 68.60 1.66 52.76 16 25 H -0.29 -16.39 6.40 99.48 0.64 -15.75 16 26 H -0.32 -17.40 7.11 99.48 0.71 -16.69 16 27 H -0.26 -13.04 6.63 99.48 0.66 -12.38 16 28 C 0.11 4.86 3.75 86.36 0.32 5.18 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.21 7.79 -2.39 -0.02 1.19 16 32 H 0.10 3.72 4.96 -2.39 -0.01 3.71 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.24 3.13 8.06 -2.90 -0.02 3.10 16 37 H 0.41 15.14 6.30 -92.71 -0.58 14.56 16 38 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.05 1.58 6.40 -2.39 -0.02 1.56 16 42 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.46 7.68 -2.39 -0.02 1.44 16 44 H 0.04 1.47 7.41 -2.38 -0.02 1.45 16 45 H 0.25 16.26 8.31 -92.71 -0.77 15.49 16 46 H 0.04 1.69 6.95 -2.38 -0.02 1.67 16 47 H 0.04 2.18 4.39 -2.39 -0.01 2.17 16 Total: -1.00 -79.20 371.85 1.65 -77.55 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 0.29 Total: 25.07 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.66 Total: 5.43 kcal Atomic # 7 Polarization: -132.94 SS G_CDS: -5.64 Total: -138.57 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.06 Total: -26.55 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 1.66 Total: 52.76 kcal Atomic # 16 Polarization: 5.57 SS G_CDS: -1.26 Total: 4.31 kcal Total: -79.20 1.65 -77.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985661.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.188 kcal (2) G-P(sol) polarization free energy of solvation -79.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds