Wall clock time and date at job start Tue Mar 31 2020 21:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47198 * 2 1 4 4 C 1.50709 * 109.46908 * 119.99433 * 2 1 3 5 5 S 1.70936 * 125.58657 * 293.32292 * 4 2 1 6 6 C 1.70778 * 91.12867 * 180.19746 * 5 4 2 7 7 N 1.28647 * 110.55660 * 359.80328 * 6 5 4 8 8 C 1.33561 * 115.76728 * 0.02562 * 7 6 5 9 9 C 1.47267 * 123.14023 * 179.97438 * 8 7 6 10 10 O 1.21632 * 119.99930 * 184.67489 * 9 8 7 11 11 N 1.34773 * 120.00094 * 4.68503 * 9 8 7 12 12 C 1.46500 * 120.00111 * 179.97438 * 11 9 8 13 13 H 1.08996 * 109.49783 * 35.05690 * 12 11 9 14 14 C 1.53046 * 109.52558 * 155.14115 * 12 11 9 15 15 C 1.53035 * 109.53691 * 181.32979 * 14 12 11 16 16 C 1.53197 * 109.31554 * 298.63434 * 15 14 12 17 17 H 1.09003 * 109.70281 * 294.78083 * 16 15 14 18 18 C 1.52994 * 109.58606 * 174.42188 * 16 15 14 19 19 N 1.46928 * 108.77361 * 54.63747 * 16 15 14 20 20 C 1.36930 * 120.63023 * 126.41534 * 19 16 15 21 21 H 1.08002 * 120.00312 * 322.75613 * 20 19 16 22 22 C 1.38816 * 120.00042 * 142.76024 * 20 19 16 23 23 N 1.31621 * 119.99980 * 348.64902 * 22 20 19 24 24 Si 1.86798 * 120.00103 * 168.64646 * 22 20 19 25 25 H 1.48497 * 109.47306 * 60.00019 * 24 22 20 26 26 H 1.48501 * 109.47162 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.47026 * 300.00088 * 24 22 20 28 28 C 1.46931 * 118.73508 * 306.38884 * 19 16 15 29 29 H 1.09005 * 109.47712 * 300.00606 * 1 2 3 30 30 H 1.09002 * 109.47232 * 60.00865 * 1 2 3 31 31 H 1.09009 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47366 * 239.99505 * 2 1 3 33 33 H 1.09004 * 109.46829 * 299.99588 * 3 2 1 34 34 H 1.08993 * 109.47366 * 59.99505 * 3 2 1 35 35 H 1.09002 * 109.47146 * 179.97438 * 3 2 1 36 36 H 1.07992 * 124.72112 * 179.84112 * 6 5 4 37 37 H 0.96998 * 120.00078 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.46001 * 301.35391 * 14 12 11 39 39 H 1.08999 * 109.45782 * 61.31027 * 14 12 11 40 40 H 1.08999 * 109.50011 * 178.68109 * 15 14 12 41 41 H 1.09002 * 109.49772 * 58.58522 * 15 14 12 42 42 H 1.08999 * 109.47740 * 300.71296 * 18 16 15 43 43 H 1.09007 * 109.47291 * 60.71522 * 18 16 15 44 44 H 1.09000 * 109.47386 * 180.70798 * 18 16 15 45 45 H 0.96994 * 120.00247 * 179.97438 * 23 22 20 46 46 H 1.09006 * 109.58453 * 173.39596 * 28 19 16 47 47 H 1.08998 * 109.58959 * 293.82526 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 16 1.8449 -0.1653 2.8399 6 6 2.6800 -1.5308 3.4353 7 7 3.0410 -2.2972 2.4671 8 6 2.7028 -1.8844 1.2428 9 6 3.0343 -2.6349 0.0199 10 8 2.7736 -2.1652 -1.0714 11 7 3.6264 -3.8423 0.1099 12 6 3.9557 -4.5892 -1.1067 13 1 4.2501 -3.8933 -1.8923 14 6 5.1095 -5.5526 -0.8188 15 6 5.4756 -6.3091 -2.0977 16 6 4.2680 -7.1272 -2.5660 17 1 4.0418 -7.9013 -1.8326 18 6 4.5800 -7.7754 -3.9162 19 7 3.1138 -6.2288 -2.7058 20 6 2.4082 -6.1768 -3.8782 21 1 2.9245 -6.2585 -4.8233 22 6 1.0293 -6.0191 -3.8520 23 7 0.3742 -6.1428 -2.7172 24 14 0.1035 -5.6312 -5.4274 25 1 0.3211 -6.7222 -6.4109 26 1 -1.3472 -5.5131 -5.1327 27 1 0.6005 -4.3502 -5.9910 28 6 2.7308 -5.3878 -1.5636 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 2.8771 -1.7244 4.4793 37 1 3.8345 -4.2167 0.9801 38 1 5.9747 -4.9890 -0.4698 39 1 4.8056 -6.2637 -0.0506 40 1 6.3127 -6.9780 -1.8978 41 1 5.7558 -5.5971 -2.8741 42 1 4.8108 -7.0001 -4.6468 43 1 5.4364 -8.4414 -3.8104 44 1 3.7152 -8.3466 -4.2536 45 1 -0.5892 -6.0322 -2.6988 46 1 1.9388 -4.7018 -1.8642 47 1 2.3802 -6.0185 -0.7466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071985663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:37 Heat of formation + Delta-G solvation = -7.483773 kcal Electronic energy + Delta-G solvation = -28024.718799 eV Core-core repulsion = 24333.381937 eV Total energy + Delta-G solvation = -3691.336862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72344 -40.12613 -38.98933 -36.88900 -35.88593 -34.63581 -32.35881 -31.83587 -30.72473 -28.14075 -27.95074 -27.14253 -26.15897 -24.19606 -23.60728 -22.50730 -22.00126 -21.27658 -20.54897 -19.01822 -18.32366 -17.85763 -17.13648 -16.92341 -16.45572 -16.28440 -15.81086 -15.52457 -15.29147 -15.14795 -15.00178 -14.82116 -14.68807 -14.42106 -14.17520 -14.03036 -13.52203 -13.16415 -13.09408 -13.04153 -12.78209 -12.72550 -12.58231 -12.47709 -12.42236 -12.27246 -12.24551 -12.15014 -11.97449 -11.65817 -11.39905 -11.16238 -10.82533 -10.64553 -10.57151 -10.40988 -10.20212 -9.85240 -8.53907 -7.86833 -5.43256 -0.47362 0.26567 0.64717 0.97111 1.39749 1.44382 1.49180 2.17439 2.34609 2.48942 3.13161 3.29859 3.57091 3.69386 3.82601 3.90136 4.06157 4.09853 4.12842 4.22073 4.34056 4.36926 4.52800 4.57249 4.66169 4.69629 4.77574 4.82277 4.85172 4.87582 4.91602 5.00191 5.04509 5.11227 5.15916 5.23116 5.26229 5.27565 5.34384 5.49273 5.55657 5.58850 5.69371 5.73533 6.30101 6.44305 6.64927 7.14231 7.21479 7.85373 8.40797 9.17636 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.003811 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.604770 B = 7346.153772 C = 8833.127965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.059 4.059 3 C -0.135 4.135 4 C -0.188 4.188 5 S 0.282 5.718 6 C -0.006 4.006 7 N -0.464 5.464 8 C -0.031 4.031 9 C 0.581 3.419 10 O -0.565 6.565 11 N -0.695 5.695 12 C 0.131 3.869 13 H 0.057 0.943 14 C -0.107 4.107 15 C -0.116 4.116 16 C 0.153 3.847 17 H 0.018 0.982 18 C -0.126 4.126 19 N -0.601 5.601 20 C -0.257 4.257 21 H 0.069 0.931 22 C -0.045 4.045 23 N -0.933 5.933 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.295 1.295 27 H -0.283 1.283 28 C 0.190 3.810 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.051 0.949 36 H 0.245 0.755 37 H 0.412 0.588 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.078 0.922 44 H 0.037 0.963 45 H 0.246 0.754 46 H 0.030 0.970 47 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.042 12.887 15.113 21.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.080 4.080 3 C -0.192 4.192 4 C -0.312 4.312 5 S 0.539 5.461 6 C -0.305 4.305 7 N -0.179 5.179 8 C -0.164 4.164 9 C 0.366 3.634 10 O -0.445 6.445 11 N -0.345 5.345 12 C 0.025 3.975 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.155 4.155 16 C 0.048 3.952 17 H 0.036 0.964 18 C -0.184 4.184 19 N -0.325 5.325 20 C -0.388 4.388 21 H 0.086 0.914 22 C -0.241 4.241 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.191 1.191 26 H -0.221 1.221 27 H -0.209 1.209 28 C 0.063 3.937 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.261 0.739 37 H 0.249 0.751 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 6.575 13.494 14.979 21.206 hybrid contribution -0.784 -0.875 -1.274 1.733 sum 5.791 12.619 13.705 19.509 Atomic orbital electron populations 1.21835 0.92890 1.01203 1.03538 1.20241 0.96759 0.97025 0.93949 1.21857 1.01007 0.92779 1.03604 1.25910 1.02387 0.98876 1.04070 1.82302 1.49165 1.22711 0.91963 1.29047 1.01485 0.95377 1.04627 1.66910 1.21301 1.31824 0.97854 1.20147 1.07327 0.96785 0.92186 1.17606 0.77102 0.81365 0.87303 1.90680 1.55154 1.69514 1.29200 1.45806 1.60188 1.17988 1.10487 1.21609 0.97076 0.93031 0.85760 0.92508 1.21640 0.96457 0.97492 0.98945 1.21946 0.98126 0.99145 0.96305 1.20816 0.87193 0.90893 0.96265 0.96409 1.21698 1.00505 0.99799 0.96369 1.44219 1.33036 1.43569 1.11675 1.19315 0.88276 1.44796 0.86387 0.91378 1.26041 0.97968 1.00795 0.99272 1.70146 1.06787 1.53964 1.26929 0.85483 0.77125 0.78540 0.80213 1.19114 1.22142 1.20880 1.20611 0.93296 0.91333 0.88494 0.90279 0.90797 0.94968 0.88756 0.90729 0.90475 0.92949 0.73892 0.75111 0.89834 0.91242 0.88516 0.92658 0.93469 0.90326 0.94411 0.94520 0.95161 0.98800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.17 71.98 0.66 -2.75 16 2 C -0.06 -1.65 3.11 -11.54 -0.04 -1.68 16 3 C -0.13 -2.73 9.03 71.98 0.65 -2.08 16 4 C -0.19 -5.10 5.04 24.99 0.13 -4.97 16 5 S 0.28 4.47 22.40 -56.49 -1.27 3.20 16 6 C -0.01 -0.11 12.17 130.71 1.59 1.48 16 7 N -0.46 -12.47 10.13 -193.03 -1.96 -14.42 16 8 C -0.03 -1.00 6.70 40.56 0.27 -0.73 16 9 C 0.58 23.67 7.76 86.62 0.67 24.34 16 10 O -0.57 -27.10 13.52 -4.13 -0.06 -27.15 16 11 N -0.69 -26.46 5.08 -445.57 -2.26 -28.72 16 12 C 0.13 5.53 2.60 45.07 0.12 5.64 16 13 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 14 C -0.11 -3.51 5.36 30.62 0.16 -3.34 16 15 C -0.12 -3.82 5.37 30.67 0.16 -3.66 16 16 C 0.15 6.41 3.50 44.97 0.16 6.57 16 17 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 18 C -0.13 -4.74 8.02 71.98 0.58 -4.16 16 19 N -0.60 -31.65 2.94 -675.20 -1.99 -33.64 16 20 C -0.26 -14.79 8.33 84.04 0.70 -14.09 16 21 H 0.07 3.78 6.49 -2.91 -0.02 3.76 16 22 C -0.04 -2.67 5.00 84.86 0.42 -2.24 16 23 N -0.93 -59.25 11.56 21.65 0.25 -59.00 16 24 Si 0.96 47.91 29.57 68.60 2.03 49.94 16 25 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 28 C 0.19 10.03 4.81 86.36 0.42 10.45 16 29 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.03 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.09 3.52 4.96 -2.39 -0.01 3.51 16 33 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 34 H 0.08 1.15 7.80 -2.39 -0.02 1.13 16 35 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.25 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.41 13.57 8.13 -92.71 -0.75 12.82 16 38 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.05 1.80 7.42 -2.39 -0.02 1.78 16 43 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.04 1.57 7.68 -2.39 -0.02 1.55 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.49 16 46 H 0.03 1.89 6.60 -2.38 -0.02 1.87 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 Total: -1.00 -78.54 383.21 1.63 -76.92 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: 0.22 Total: 24.10 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: 6.65 Total: 8.78 kcal Atomic # 7 Polarization: -129.83 SS G_CDS: -5.96 Total: -135.78 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -0.06 Total: -27.15 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 16 Polarization: 4.47 SS G_CDS: -1.27 Total: 3.20 kcal Total: -78.54 1.63 -76.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.432 kcal (2) G-P(sol) polarization free energy of solvation -78.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds