Wall clock time and date at job start Tue Mar 31 2020 21:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47220 * 2 1 4 4 C 1.50703 * 109.46924 * 119.99646 * 2 1 3 5 5 S 1.70943 * 125.58418 * 308.02892 * 4 2 1 6 6 C 1.70776 * 91.12799 * 179.97438 * 5 4 2 7 7 N 1.28654 * 110.55656 * 359.76189 * 6 5 4 8 8 C 1.33551 * 115.76724 * 0.42474 * 7 6 5 9 9 C 1.47273 * 123.14426 * 179.82845 * 8 7 6 10 10 O 1.21628 * 120.00199 * 173.91513 * 9 8 7 11 11 N 1.34782 * 119.99279 * 353.91061 * 9 8 7 12 12 C 1.46501 * 119.99479 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49922 * 324.93746 * 12 11 9 14 14 C 1.53104 * 109.48873 * 204.85284 * 12 11 9 15 15 C 1.53042 * 109.50478 * 178.69958 * 14 12 11 16 16 C 1.53194 * 109.33303 * 61.35232 * 15 14 12 17 17 H 1.08997 * 109.58918 * 65.13745 * 16 15 14 18 18 C 1.53005 * 109.58529 * 185.55831 * 16 15 14 19 19 N 1.46922 * 108.77757 * 305.34693 * 16 15 14 20 20 C 1.36943 * 120.63076 * 233.58957 * 19 16 15 21 21 H 1.07997 * 119.99760 * 36.40127 * 20 19 16 22 22 C 1.38811 * 119.99862 * 216.40525 * 20 19 16 23 23 N 1.31621 * 120.00091 * 9.86158 * 22 20 19 24 24 Si 1.86799 * 119.99975 * 189.86523 * 22 20 19 25 25 H 1.48496 * 109.47301 * 59.99700 * 24 22 20 26 26 H 1.48500 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46782 * 299.99758 * 24 22 20 28 28 C 1.46925 * 118.73945 * 53.61041 * 19 16 15 29 29 H 1.08991 * 109.47269 * 300.00544 * 1 2 3 30 30 H 1.08998 * 109.46862 * 60.00654 * 1 2 3 31 31 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47364 * 239.99662 * 2 1 3 33 33 H 1.08994 * 109.47211 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47185 * 299.99467 * 3 2 1 35 35 H 1.09000 * 109.47228 * 59.99578 * 3 2 1 36 36 H 1.07994 * 124.72267 * 180.02562 * 6 5 4 37 37 H 0.96995 * 120.00078 * 0.02562 * 11 9 8 38 38 H 1.09008 * 109.49868 * 58.67601 * 14 12 11 39 39 H 1.08993 * 109.45545 * 298.70030 * 14 12 11 40 40 H 1.08999 * 109.49508 * 301.38920 * 15 14 12 41 41 H 1.09003 * 109.49828 * 181.31822 * 15 14 12 42 42 H 1.09007 * 109.46333 * 59.99883 * 18 16 15 43 43 H 1.08997 * 109.47221 * 179.97438 * 18 16 15 44 44 H 1.09000 * 109.47182 * 300.00739 * 18 16 15 45 45 H 0.97002 * 119.99961 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.58249 * 66.17673 * 28 19 16 47 47 H 1.09004 * 109.58668 * 186.60181 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 16 1.5564 -0.3735 2.8375 6 6 2.5863 -1.5977 3.4349 7 7 3.2048 -2.1793 2.4682 8 6 2.9327 -1.7189 1.2445 9 6 3.5509 -2.2630 0.0235 10 8 3.1810 -1.8777 -1.0691 11 7 4.5268 -3.1880 0.1172 12 6 5.1414 -3.7298 -1.0973 13 1 4.3894 -3.8063 -1.8826 14 6 5.7169 -5.1177 -0.8031 15 6 6.3304 -5.6976 -2.0797 16 6 7.4714 -4.7906 -2.5513 17 1 8.2757 -4.8028 -1.8159 18 6 7.9977 -5.2874 -3.8994 19 7 6.9580 -3.4218 -2.6972 20 6 7.1191 -2.7377 -3.8725 21 1 7.0569 -3.2614 -4.8149 22 6 7.3624 -1.3712 -3.8525 23 7 7.6309 -0.7672 -2.7143 24 14 7.3085 -0.3896 -5.4409 25 1 5.9585 -0.5048 -6.0485 26 1 7.6003 1.0374 -5.1511 27 1 8.3236 -0.9209 -6.3857 28 6 6.2689 -2.8006 -1.5579 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.6993 -1.8515 4.4785 37 1 4.8215 -3.4956 0.9886 38 1 4.9210 -5.7746 -0.4519 39 1 6.4859 -5.0365 -0.0351 40 1 5.5674 -5.7559 -2.8560 41 1 6.7192 -6.6953 -1.8758 42 1 7.1920 -5.2677 -4.6334 43 1 8.8089 -4.6407 -4.2334 44 1 8.3663 -6.3075 -3.7919 45 1 7.8013 0.1877 -2.7004 46 1 6.9753 -2.6505 -0.7413 47 1 5.8505 -1.8413 -1.8627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071985664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:40 Heat of formation + Delta-G solvation = 14.526336 kcal Electronic energy + Delta-G solvation = -28035.152784 eV Core-core repulsion = 24344.770352 eV Total energy + Delta-G solvation = -3690.382432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50464 -38.69034 -37.40025 -35.80607 -34.26293 -32.73611 -30.80101 -29.91384 -29.58637 -27.20449 -26.43625 -25.45414 -24.72121 -22.63313 -22.10308 -21.48774 -20.38169 -19.68022 -19.02562 -17.98880 -16.64030 -16.29114 -15.69501 -15.43332 -15.14916 -14.80954 -14.26991 -13.97855 -13.91729 -13.74863 -13.65918 -13.39335 -13.27263 -13.08407 -12.68683 -12.37559 -12.29629 -12.13582 -11.78089 -11.52998 -11.40621 -11.27093 -11.06198 -11.04057 -10.85149 -10.69699 -10.48210 -10.36696 -10.23163 -9.93223 -9.90238 -9.68933 -9.51126 -9.39505 -9.23601 -8.99378 -8.47418 -8.35982 -6.46002 -5.70795 -3.23365 0.51190 1.15549 1.57061 2.08927 3.43278 3.48780 3.50424 3.58282 3.68238 4.13589 4.55485 4.63605 4.84198 4.99953 5.10961 5.33942 5.41045 5.42026 5.47529 5.54124 5.56897 5.61890 5.73505 5.75090 5.83643 5.89836 6.02881 6.04179 6.17671 6.24320 6.32707 6.34905 6.42193 6.45578 6.51890 6.58905 6.69100 6.80863 7.02353 7.11781 7.19741 7.31193 7.39951 7.75839 7.89785 8.01439 8.58289 8.64560 9.29591 9.91045 10.51323 11.37008 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003823 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.814610 B = 7323.068390 C = 8836.143866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.165 4.165 5 S 0.186 5.814 6 C -0.011 4.011 7 N -0.436 5.436 8 C -0.001 4.001 9 C 0.591 3.409 10 O -0.524 6.524 11 N -0.700 5.700 12 C 0.116 3.884 13 H 0.083 0.917 14 C -0.116 4.116 15 C -0.126 4.126 16 C 0.165 3.835 17 H 0.025 0.975 18 C -0.134 4.134 19 N -0.582 5.582 20 C -0.256 4.256 21 H 0.065 0.935 22 C 0.013 3.987 23 N -0.899 5.899 24 Si 0.900 3.100 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.173 3.827 29 H 0.051 0.949 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.050 0.950 36 H 0.202 0.798 37 H 0.401 0.599 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.036 0.964 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.578 -1.553 12.914 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.199 4.199 4 C -0.288 4.288 5 S 0.441 5.559 6 C -0.310 4.310 7 N -0.150 5.150 8 C -0.135 4.135 9 C 0.374 3.626 10 O -0.401 6.401 11 N -0.349 5.349 12 C 0.010 3.990 13 H 0.101 0.899 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.058 3.942 17 H 0.042 0.958 18 C -0.192 4.192 19 N -0.305 5.305 20 C -0.385 4.385 21 H 0.083 0.917 22 C -0.187 4.187 23 N -0.542 5.542 24 Si 0.730 3.270 25 H -0.208 1.208 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.046 3.954 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.218 0.782 37 H 0.235 0.765 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.031 -0.892 12.753 18.255 hybrid contribution 0.635 0.062 -0.711 0.955 sum -12.396 -0.830 12.042 17.302 Atomic orbital electron populations 1.21902 0.94035 1.02090 1.01990 1.20324 0.95599 0.96184 0.95233 1.21852 1.02035 0.94199 1.01777 1.25667 1.01249 1.00815 1.01111 1.82703 1.41271 1.35008 0.96880 1.28262 1.00172 0.99088 1.03517 1.66943 1.22931 1.26954 0.98195 1.20522 1.01569 0.98887 0.92484 1.16971 0.79744 0.79557 0.86328 1.90693 1.63047 1.59381 1.26998 1.45923 1.36944 1.41335 1.10704 1.22084 0.97368 0.94110 0.85405 0.89910 1.21681 0.99478 0.95579 0.98672 1.22049 0.99719 0.98219 0.96559 1.20509 0.92402 0.86143 0.95098 0.95774 1.21776 1.01340 0.98294 0.97777 1.43937 1.63085 1.11174 1.12338 1.18999 1.43730 0.90649 0.85169 0.91750 1.25274 0.98592 0.98323 0.96478 1.69968 1.50103 1.09536 1.24583 0.86420 0.78101 0.79141 0.83367 1.20820 1.21687 1.20826 1.21006 0.89712 0.95345 0.89305 0.92981 0.91488 0.92405 0.84409 0.91993 0.91517 0.93099 0.78150 0.76468 0.93055 0.92213 0.92118 0.92703 0.92877 0.91999 0.94458 0.93673 0.96367 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.01 37.16 0.33 -1.18 16 2 C -0.05 -0.72 3.10 -91.77 -0.28 -1.01 16 3 C -0.14 -1.75 9.17 37.16 0.34 -1.41 16 4 C -0.16 -2.26 5.06 -35.39 -0.18 -2.44 16 5 S 0.19 1.78 22.35 -107.50 -2.40 -0.62 16 6 C -0.01 -0.11 12.17 51.43 0.63 0.52 16 7 N -0.44 -6.09 10.14 -12.36 -0.13 -6.22 16 8 C 0.00 -0.01 6.70 -84.53 -0.57 -0.58 16 9 C 0.59 11.30 7.75 -12.59 -0.10 11.20 16 10 O -0.52 -11.49 13.54 5.25 0.07 -11.42 16 11 N -0.70 -12.75 5.08 -54.78 -0.28 -13.03 16 12 C 0.12 2.34 2.60 -67.78 -0.18 2.16 16 13 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 14 C -0.12 -1.98 5.36 -26.66 -0.14 -2.12 16 15 C -0.13 -2.21 5.37 -26.61 -0.14 -2.35 16 16 C 0.16 3.47 3.50 -67.60 -0.24 3.23 16 17 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 18 C -0.13 -2.59 8.01 37.16 0.30 -2.29 16 19 N -0.58 -14.74 2.95 -164.77 -0.49 -15.23 16 20 C -0.26 -7.07 8.38 -15.06 -0.13 -7.19 16 21 H 0.06 1.74 6.43 -52.49 -0.34 1.40 16 22 C 0.01 0.37 5.04 -17.43 -0.09 0.29 16 23 N -0.90 -26.85 11.40 55.49 0.63 -26.22 16 24 Si 0.90 22.36 29.56 -169.99 -5.03 17.34 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.17 4.30 4.80 -3.71 -0.02 4.28 16 29 H 0.05 0.47 7.77 -51.93 -0.40 0.06 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.14 2.36 4.98 -51.93 -0.26 2.10 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.20 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.40 6.48 8.14 -40.82 -0.33 6.15 16 38 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 1.03 7.38 -51.93 -0.38 0.65 16 43 H 0.06 1.29 7.71 -51.93 -0.40 0.89 16 44 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 2.49 6.49 -51.93 -0.34 2.15 16 LS Contribution 382.91 15.07 5.77 5.77 Total: -1.00 -32.25 382.91 -9.78 -42.03 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -7.48 Total: 6.48 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -0.46 Total: 1.10 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.26 Total: -60.69 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.07 Total: -11.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.40 Total: -0.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.25 -9.78 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.557 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds