Wall clock time and date at job start Tue Mar 31 2020 21:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47220 * 2 1 4 4 C 1.50703 * 109.46924 * 119.99646 * 2 1 3 5 5 S 1.70943 * 125.58418 * 308.02892 * 4 2 1 6 6 C 1.70776 * 91.12799 * 179.97438 * 5 4 2 7 7 N 1.28654 * 110.55656 * 359.76189 * 6 5 4 8 8 C 1.33551 * 115.76724 * 0.42474 * 7 6 5 9 9 C 1.47273 * 123.14426 * 179.82845 * 8 7 6 10 10 O 1.21628 * 120.00199 * 173.91513 * 9 8 7 11 11 N 1.34782 * 119.99279 * 353.91061 * 9 8 7 12 12 C 1.46501 * 119.99479 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.49922 * 324.93746 * 12 11 9 14 14 C 1.53104 * 109.48873 * 204.85284 * 12 11 9 15 15 C 1.53042 * 109.50478 * 178.69958 * 14 12 11 16 16 C 1.53194 * 109.33303 * 61.35232 * 15 14 12 17 17 H 1.08997 * 109.58918 * 65.13745 * 16 15 14 18 18 C 1.53005 * 109.58529 * 185.55831 * 16 15 14 19 19 N 1.46922 * 108.77757 * 305.34693 * 16 15 14 20 20 C 1.36943 * 120.63076 * 233.58957 * 19 16 15 21 21 H 1.07997 * 119.99760 * 36.40127 * 20 19 16 22 22 C 1.38811 * 119.99862 * 216.40525 * 20 19 16 23 23 N 1.31621 * 120.00091 * 9.86158 * 22 20 19 24 24 Si 1.86799 * 119.99975 * 189.86523 * 22 20 19 25 25 H 1.48496 * 109.47301 * 59.99700 * 24 22 20 26 26 H 1.48500 * 109.47363 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46782 * 299.99758 * 24 22 20 28 28 C 1.46925 * 118.73945 * 53.61041 * 19 16 15 29 29 H 1.08991 * 109.47269 * 300.00544 * 1 2 3 30 30 H 1.08998 * 109.46862 * 60.00654 * 1 2 3 31 31 H 1.09001 * 109.47449 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47364 * 239.99662 * 2 1 3 33 33 H 1.08994 * 109.47211 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47185 * 299.99467 * 3 2 1 35 35 H 1.09000 * 109.47228 * 59.99578 * 3 2 1 36 36 H 1.07994 * 124.72267 * 180.02562 * 6 5 4 37 37 H 0.96995 * 120.00078 * 0.02562 * 11 9 8 38 38 H 1.09008 * 109.49868 * 58.67601 * 14 12 11 39 39 H 1.08993 * 109.45545 * 298.70030 * 14 12 11 40 40 H 1.08999 * 109.49508 * 301.38920 * 15 14 12 41 41 H 1.09003 * 109.49828 * 181.31822 * 15 14 12 42 42 H 1.09007 * 109.46333 * 59.99883 * 18 16 15 43 43 H 1.08997 * 109.47221 * 179.97438 * 18 16 15 44 44 H 1.09000 * 109.47182 * 300.00739 * 18 16 15 45 45 H 0.97002 * 119.99961 * 179.97438 * 23 22 20 46 46 H 1.09005 * 109.58249 * 66.17673 * 28 19 16 47 47 H 1.09004 * 109.58668 * 186.60181 * 28 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 16 1.5564 -0.3735 2.8375 6 6 2.5863 -1.5977 3.4349 7 7 3.2048 -2.1793 2.4682 8 6 2.9327 -1.7189 1.2445 9 6 3.5509 -2.2630 0.0235 10 8 3.1810 -1.8777 -1.0691 11 7 4.5268 -3.1880 0.1172 12 6 5.1414 -3.7298 -1.0973 13 1 4.3894 -3.8063 -1.8826 14 6 5.7169 -5.1177 -0.8031 15 6 6.3304 -5.6976 -2.0797 16 6 7.4714 -4.7906 -2.5513 17 1 8.2757 -4.8028 -1.8159 18 6 7.9977 -5.2874 -3.8994 19 7 6.9580 -3.4218 -2.6972 20 6 7.1191 -2.7377 -3.8725 21 1 7.0569 -3.2614 -4.8149 22 6 7.3624 -1.3712 -3.8525 23 7 7.6309 -0.7672 -2.7143 24 14 7.3085 -0.3896 -5.4409 25 1 5.9585 -0.5048 -6.0485 26 1 7.6003 1.0374 -5.1511 27 1 8.3236 -0.9209 -6.3857 28 6 6.2689 -2.8006 -1.5579 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.6993 -1.8515 4.4785 37 1 4.8215 -3.4956 0.9886 38 1 4.9210 -5.7746 -0.4519 39 1 6.4859 -5.0365 -0.0351 40 1 5.5674 -5.7559 -2.8560 41 1 6.7192 -6.6953 -1.8758 42 1 7.1920 -5.2677 -4.6334 43 1 8.8089 -4.6407 -4.2334 44 1 8.3663 -6.3075 -3.7919 45 1 7.8013 0.1877 -2.7004 46 1 6.9753 -2.6505 -0.7413 47 1 5.8505 -1.8413 -1.8627 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071985664.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:39 Heat of formation + Delta-G solvation = -7.060199 kcal Electronic energy + Delta-G solvation = -28036.088847 eV Core-core repulsion = 24344.770352 eV Total energy + Delta-G solvation = -3691.318495 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71970 -40.12277 -38.98749 -36.88810 -35.88388 -34.64053 -32.35780 -31.81688 -30.72176 -28.14310 -27.94944 -27.14548 -26.15915 -24.18694 -23.60405 -22.50691 -22.00058 -21.27251 -20.54491 -19.01741 -18.32379 -17.85511 -17.14439 -16.92218 -16.44594 -16.28639 -15.79796 -15.52071 -15.29364 -15.14281 -15.00001 -14.81605 -14.68986 -14.41384 -14.16529 -14.03026 -13.53181 -13.16484 -13.08656 -13.03800 -12.77505 -12.72676 -12.58055 -12.47769 -12.41153 -12.27300 -12.23847 -12.14433 -11.97541 -11.65494 -11.39526 -11.16650 -10.82380 -10.64781 -10.56942 -10.40718 -10.19796 -9.85044 -8.54280 -7.86381 -5.42148 -0.47183 0.26691 0.64796 0.97512 1.40041 1.44684 1.49383 2.17589 2.34917 2.49250 3.13466 3.30688 3.57172 3.69644 3.82672 3.90426 4.06185 4.09992 4.12786 4.22349 4.34197 4.37051 4.52780 4.57606 4.66080 4.69605 4.77802 4.82231 4.85197 4.87514 4.91708 5.00109 5.04469 5.11316 5.16041 5.23247 5.26314 5.27867 5.35240 5.50795 5.55417 5.58896 5.69482 5.74734 6.30358 6.44317 6.65158 7.14604 7.21852 7.86047 8.40602 9.18352 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.012420 B = 0.003823 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.814610 B = 7323.068390 C = 8836.143866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.188 4.188 5 S 0.282 5.718 6 C -0.006 4.006 7 N -0.464 5.464 8 C -0.030 4.030 9 C 0.581 3.419 10 O -0.565 6.565 11 N -0.695 5.695 12 C 0.131 3.869 13 H 0.056 0.944 14 C -0.107 4.107 15 C -0.116 4.116 16 C 0.153 3.847 17 H 0.019 0.981 18 C -0.126 4.126 19 N -0.601 5.601 20 C -0.256 4.256 21 H 0.070 0.930 22 C -0.046 4.046 23 N -0.934 5.934 24 Si 0.960 3.040 25 H -0.282 1.282 26 H -0.295 1.295 27 H -0.266 1.266 28 C 0.189 3.811 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.245 0.755 37 H 0.412 0.588 38 H 0.083 0.917 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.037 0.963 44 H 0.078 0.922 45 H 0.246 0.754 46 H -0.007 1.007 47 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -2.764 15.107 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 C -0.194 4.194 4 C -0.313 4.313 5 S 0.539 5.461 6 C -0.305 4.305 7 N -0.179 5.179 8 C -0.164 4.164 9 C 0.366 3.634 10 O -0.445 6.445 11 N -0.345 5.345 12 C 0.025 3.975 13 H 0.074 0.926 14 C -0.145 4.145 15 C -0.156 4.156 16 C 0.048 3.952 17 H 0.036 0.964 18 C -0.184 4.184 19 N -0.326 5.326 20 C -0.387 4.387 21 H 0.087 0.913 22 C -0.242 4.242 23 N -0.579 5.579 24 Si 0.787 3.213 25 H -0.209 1.209 26 H -0.222 1.222 27 H -0.192 1.192 28 C 0.062 3.938 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.050 0.950 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.261 0.739 37 H 0.249 0.751 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.056 0.944 44 H 0.097 0.903 45 H 0.055 0.945 46 H 0.011 0.989 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -14.600 -2.144 14.969 21.020 hybrid contribution 1.074 0.464 -1.284 1.737 sum -13.526 -1.680 13.684 19.314 Atomic orbital electron populations 1.21859 0.91509 1.02293 1.03610 1.20231 0.97649 0.96109 0.93935 1.21827 1.00041 0.94049 1.03520 1.25908 1.00925 1.00359 1.04081 1.82299 1.38882 1.32867 0.92069 1.29050 0.98666 0.98200 1.04633 1.66911 1.24655 1.28439 0.97875 1.20147 1.03321 1.00728 0.92226 1.17609 0.79502 0.78970 0.87300 1.90681 1.64318 1.60497 1.29050 1.45806 1.36806 1.41377 1.10480 1.21629 0.94907 0.95186 0.85783 0.92577 1.21653 1.00526 0.93430 0.98931 1.21952 0.98090 0.99201 0.96316 1.20814 0.93677 0.84413 0.96260 0.96368 1.21701 1.00239 1.00070 0.96371 1.44232 1.63885 1.12833 1.11613 1.19344 1.41927 0.91046 0.86373 0.91267 1.26033 0.99313 0.99563 0.99303 1.70145 1.52173 1.09073 1.26549 0.85466 0.78185 0.77431 0.80169 1.20859 1.22168 1.19159 1.20628 0.90289 0.94456 0.88437 0.90462 0.90737 0.92889 0.88806 0.95042 0.90824 0.90270 0.73883 0.75127 0.89864 0.91242 0.92694 0.88521 0.93482 0.94376 0.90295 0.94549 0.98869 0.94786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.01 71.98 0.65 -2.09 16 2 C -0.06 -1.64 3.10 -11.54 -0.04 -1.68 16 3 C -0.14 -3.45 9.17 71.98 0.66 -2.79 16 4 C -0.19 -5.13 5.06 24.99 0.13 -5.00 16 5 S 0.28 4.49 22.35 -56.49 -1.26 3.23 16 6 C -0.01 -0.11 12.17 130.71 1.59 1.48 16 7 N -0.46 -12.49 10.14 -193.02 -1.96 -14.44 16 8 C -0.03 -0.99 6.70 40.56 0.27 -0.72 16 9 C 0.58 23.76 7.75 86.62 0.67 24.43 16 10 O -0.57 -27.21 13.54 -4.12 -0.06 -27.26 16 11 N -0.69 -26.56 5.08 -445.46 -2.26 -28.82 16 12 C 0.13 5.53 2.60 45.09 0.12 5.65 16 13 H 0.06 2.67 7.58 -2.39 -0.02 2.66 16 14 C -0.11 -3.52 5.36 30.64 0.16 -3.36 16 15 C -0.12 -3.84 5.37 30.67 0.16 -3.68 16 16 C 0.15 6.40 3.50 44.98 0.16 6.56 16 17 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 18 C -0.13 -4.73 8.01 71.98 0.58 -4.15 16 19 N -0.60 -31.68 2.95 -675.21 -1.99 -33.67 16 20 C -0.26 -14.74 8.38 84.03 0.70 -14.03 16 21 H 0.07 3.84 6.43 -2.91 -0.02 3.82 16 22 C -0.05 -2.76 5.04 84.86 0.43 -2.33 16 23 N -0.93 -59.28 11.40 21.65 0.25 -59.03 16 24 Si 0.96 47.89 29.56 68.60 2.03 49.92 16 25 H -0.28 -13.95 7.11 99.48 0.71 -13.24 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.12 16 27 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 28 C 0.19 10.01 4.80 86.36 0.41 10.42 16 29 H 0.08 1.15 7.77 -2.39 -0.02 1.14 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 3.53 4.98 -2.39 -0.01 3.51 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.25 1.82 8.06 -2.91 -0.02 1.79 16 37 H 0.41 13.61 8.14 -92.71 -0.75 12.86 16 38 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 39 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.79 7.38 -2.38 -0.02 1.77 16 43 H 0.04 1.57 7.71 -2.39 -0.02 1.56 16 44 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 46 H -0.01 -0.38 8.14 -2.38 -0.02 -0.40 16 47 H 0.03 2.13 6.49 -2.39 -0.02 2.11 16 Total: -1.00 -78.51 382.91 1.62 -76.89 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: 0.22 Total: 24.49 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 6.66 Total: 8.71 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -5.97 Total: -135.97 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.06 Total: -27.26 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Atomic # 16 Polarization: 4.49 SS G_CDS: -1.26 Total: 3.23 kcal Total: -78.51 1.62 -76.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071985664.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.827 kcal (2) G-P(sol) polarization free energy of solvation -78.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds