Wall clock time and date at job start Tue Mar 31 2020 21:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.50697 * 109.47011 * 119.99845 * 2 1 3 5 5 N 1.29432 * 124.81071 * 299.97479 * 4 2 1 6 6 C 1.30933 * 117.36924 * 180.02562 * 5 4 2 7 7 C 1.35665 * 114.19433 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.13337 * 180.02562 * 7 6 5 9 9 O 1.21687 * 119.99837 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99859 * 0.03017 * 8 7 6 11 11 C 1.46505 * 119.99764 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.52390 * 324.91203 * 11 10 8 13 13 C 1.53039 * 109.49460 * 204.83739 * 11 10 8 14 14 C 1.53039 * 109.53914 * 301.40907 * 13 11 10 15 15 C 1.53190 * 109.31692 * 298.63981 * 14 13 11 16 16 H 1.09000 * 109.70233 * 294.78001 * 15 14 13 17 17 C 1.53001 * 109.59182 * 174.42092 * 15 14 13 18 18 N 1.46928 * 108.77758 * 54.63092 * 15 14 13 19 19 C 1.36929 * 120.63393 * 126.41292 * 18 15 14 20 20 H 1.08004 * 120.00200 * 330.84899 * 19 18 15 21 21 C 1.38809 * 120.00367 * 150.84411 * 19 18 15 22 22 N 1.31620 * 119.99787 * 343.82157 * 21 19 18 23 23 Si 1.86793 * 120.00361 * 163.82161 * 21 19 18 24 24 H 1.48504 * 109.47031 * 94.31122 * 23 21 19 25 25 H 1.48496 * 109.47382 * 214.30849 * 23 21 19 26 26 H 1.48497 * 109.47172 * 334.31467 * 23 21 19 27 27 C 1.46930 * 118.73561 * 306.39954 * 18 15 14 28 28 S 1.70964 * 124.80307 * 120.29257 * 4 2 1 29 29 H 1.09004 * 109.46971 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47273 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47396 * 240.00002 * 2 1 3 33 33 H 1.09005 * 109.47191 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46924 * 299.99988 * 3 2 1 35 35 H 1.08997 * 109.47441 * 60.00441 * 3 2 1 36 36 H 1.07998 * 122.90696 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00209 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.46435 * 61.43390 * 13 11 10 39 39 H 1.09006 * 109.46067 * 181.38964 * 13 11 10 40 40 H 1.09002 * 109.49892 * 178.68094 * 14 13 11 41 41 H 1.09002 * 109.49913 * 58.59225 * 14 13 11 42 42 H 1.09000 * 109.46376 * 300.71341 * 17 15 14 43 43 H 1.09004 * 109.46969 * 60.70319 * 17 15 14 44 44 H 1.08996 * 109.47412 * 180.70778 * 17 15 14 45 45 H 0.96998 * 120.00378 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58630 * 173.39479 * 27 18 15 47 47 H 1.09005 * 109.58670 * 293.81364 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7780 -0.3499 2.4473 6 6 2.2910 -1.0747 3.4095 7 6 3.0332 -2.1255 2.9788 8 6 3.7237 -3.1024 3.8276 9 8 4.3622 -4.0055 3.3201 10 7 3.6509 -2.9997 5.1694 11 6 4.3410 -3.9751 6.0171 12 1 4.3116 -4.9558 5.5423 13 6 3.6492 -4.0468 7.3804 14 6 3.6610 -2.6630 8.0337 15 6 5.1105 -2.2170 8.2499 16 1 5.5941 -2.8760 8.9710 17 6 5.1324 -0.7796 8.7737 18 7 5.8225 -2.2844 6.9665 19 6 6.4962 -1.1943 6.4842 20 1 6.1630 -0.1984 6.7366 21 6 7.6074 -1.3689 5.6709 22 7 8.2057 -2.5400 5.6167 23 14 8.2538 0.0580 4.6534 24 1 9.3334 0.7506 5.4018 25 1 8.7928 -0.4545 3.3682 26 1 7.1492 1.0125 4.3815 27 6 5.7982 -3.5441 6.2105 28 16 3.0251 -2.1021 1.2168 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1368 -0.8551 4.4556 37 1 3.1422 -2.2796 5.5738 38 1 2.6190 -4.3771 7.2479 39 1 4.1779 -4.7545 8.0191 40 1 3.1476 -2.7097 8.9941 41 1 3.1540 -1.9496 7.3841 42 1 4.6439 -0.1232 8.0535 43 1 4.6037 -0.7317 9.7257 44 1 6.1648 -0.4600 8.9149 45 1 8.9820 -2.6622 5.0481 46 1 6.2675 -3.3957 5.2380 47 1 6.3363 -4.3133 6.7646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072127760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:12 Heat of formation + Delta-G solvation = 17.304716 kcal Electronic energy + Delta-G solvation = -28066.818955 eV Core-core repulsion = 24376.557002 eV Total energy + Delta-G solvation = -3690.261953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.10452 -39.19716 -37.52020 -35.54869 -34.15338 -32.75481 -31.25459 -29.96219 -29.31128 -27.38666 -26.32807 -25.83889 -24.93194 -22.71227 -22.19773 -21.52384 -20.46360 -19.21114 -18.82304 -18.00929 -16.96361 -16.27510 -15.58955 -15.19296 -15.04993 -14.77273 -14.42999 -14.18782 -14.11027 -13.87250 -13.75538 -13.46160 -13.20155 -13.01390 -12.78061 -12.51586 -12.33272 -11.96185 -11.84319 -11.52299 -11.43578 -11.26969 -11.21469 -11.17062 -10.98532 -10.88997 -10.70140 -10.40024 -10.34696 -10.01755 -9.95389 -9.54561 -9.47925 -9.35650 -9.33661 -8.88171 -8.45114 -8.40798 -6.60580 -5.75184 -3.18425 0.36582 1.22541 1.74939 2.59712 3.37577 3.45964 3.46575 3.54364 3.76919 3.94442 4.50608 4.59952 4.78024 4.83667 5.10466 5.23937 5.29445 5.32915 5.34654 5.41885 5.44553 5.48864 5.55361 5.58289 5.62250 5.69876 5.94094 5.98592 6.01304 6.08636 6.12677 6.16945 6.30831 6.33699 6.42212 6.49045 6.58181 6.65019 6.85449 7.03723 7.10315 7.34993 7.64496 7.67119 7.84095 7.98196 8.48804 8.65083 9.23462 9.88237 10.44050 11.32995 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.004182 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.138919 B = 6694.051993 C = 7594.934714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.016 4.016 3 C -0.141 4.141 4 C 0.037 3.963 5 N -0.472 5.472 6 C 0.087 3.913 7 C -0.275 4.275 8 C 0.591 3.409 9 O -0.541 6.541 10 N -0.685 5.685 11 C 0.120 3.880 12 H 0.078 0.922 13 C -0.119 4.119 14 C -0.130 4.130 15 C 0.165 3.835 16 H 0.025 0.975 17 C -0.136 4.136 18 N -0.582 5.582 19 C -0.251 4.251 20 H 0.068 0.932 21 C 0.008 3.992 22 N -0.898 5.898 23 Si 0.892 3.108 24 H -0.287 1.287 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.162 3.838 28 S 0.215 5.785 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.179 0.821 37 H 0.395 0.605 38 H 0.052 0.948 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.253 0.747 46 H 0.096 0.904 47 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.846 2.543 -6.381 17.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.238 4.238 5 N -0.186 5.186 6 C -0.071 4.071 7 C -0.400 4.400 8 C 0.375 3.625 9 O -0.420 6.420 10 N -0.335 5.335 11 C 0.014 3.986 12 H 0.096 0.904 13 C -0.157 4.157 14 C -0.170 4.170 15 C 0.058 3.942 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.306 5.306 19 C -0.380 4.380 20 H 0.085 0.915 21 C -0.191 4.191 22 N -0.542 5.542 23 Si 0.722 3.278 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.206 1.206 27 C 0.035 3.965 28 S 0.474 5.526 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.195 0.805 37 H 0.231 0.769 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.078 1.670 -7.552 16.946 hybrid contribution 0.217 1.254 0.715 1.460 sum -14.861 2.924 -6.837 16.618 Atomic orbital electron populations 1.21799 0.92793 1.02333 1.02834 1.19844 0.96933 0.96179 0.90884 1.21816 1.01437 0.93900 1.02829 1.27474 1.00482 0.98725 0.97142 1.65981 1.23881 1.30258 0.98468 1.22098 0.94739 0.90220 1.00020 1.25907 1.10833 1.05416 0.97856 1.16591 0.80149 0.83481 0.82288 1.90822 1.42487 1.34775 1.73940 1.45608 1.52056 1.31388 1.04445 1.21854 0.96322 0.91457 0.88979 0.90398 1.21696 0.99563 0.98248 0.96160 1.22070 0.99608 0.96137 0.99182 1.20464 0.90087 0.94801 0.88816 0.95714 1.21797 1.01903 0.97193 0.98434 1.44048 1.59007 1.10662 1.16860 1.19058 1.05527 0.86561 1.26882 0.91471 1.25022 0.95969 0.96391 1.01754 1.69988 1.20945 1.22759 1.40466 0.86447 0.78823 0.82269 0.80278 1.21454 1.21584 1.20564 1.21181 0.88982 0.87325 0.99000 1.84002 1.43499 1.24036 1.01073 0.91361 0.91672 0.92529 0.89290 0.92357 0.91655 0.91309 0.80453 0.76941 0.92930 0.90908 0.92740 0.92778 0.92987 0.94414 0.92018 0.93682 0.88601 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.17 37.16 0.34 -0.78 16 2 C -0.02 -0.15 3.35 -91.77 -0.31 -0.46 16 3 C -0.14 -1.28 9.17 37.16 0.34 -0.94 16 4 C 0.04 0.47 5.91 -13.29 -0.08 0.39 16 5 N -0.47 -6.78 10.49 -11.50 -0.12 -6.90 16 6 C 0.09 1.29 10.93 -18.85 -0.21 1.09 16 7 C -0.28 -4.62 6.48 -37.10 -0.24 -4.86 16 8 C 0.59 11.56 7.75 -12.86 -0.10 11.46 16 9 O -0.54 -12.42 16.63 5.20 0.09 -12.33 16 10 N -0.68 -12.29 4.90 -55.00 -0.27 -12.56 16 11 C 0.12 2.25 2.81 -67.81 -0.19 2.06 16 12 H 0.08 1.50 7.58 -51.93 -0.39 1.11 16 13 C -0.12 -1.82 5.59 -26.69 -0.15 -1.97 16 14 C -0.13 -2.02 5.21 -26.61 -0.14 -2.16 16 15 C 0.16 3.19 3.50 -67.60 -0.24 2.96 16 16 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 17 C -0.14 -2.43 7.94 37.16 0.30 -2.13 16 18 N -0.58 -13.69 2.91 -164.78 -0.48 -14.17 16 19 C -0.25 -6.59 8.59 -15.06 -0.13 -6.72 16 20 H 0.07 1.73 6.22 -52.48 -0.33 1.41 16 21 C 0.01 0.22 4.93 -17.43 -0.09 0.13 16 22 N -0.90 -26.39 11.22 55.49 0.62 -25.77 16 23 Si 0.89 22.23 29.58 -169.99 -5.03 17.20 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.16 3.82 4.89 -3.71 -0.02 3.80 16 28 S 0.21 3.08 23.00 -107.50 -2.47 0.61 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.18 2.27 7.15 -52.49 -0.38 1.90 16 37 H 0.40 6.28 5.48 -40.82 -0.22 6.06 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.82 6.40 -51.93 -0.33 0.49 16 42 H 0.05 0.93 7.45 -51.93 -0.39 0.55 16 43 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 1.22 7.62 -51.93 -0.40 0.82 16 45 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.10 2.69 6.11 -51.93 -0.32 2.37 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -31.96 384.40 -10.15 -42.11 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.38 Total: 4.17 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -0.90 Total: 1.86 kcal Atomic # 7 Polarization: -59.16 SS G_CDS: -0.25 Total: -59.40 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Atomic # 16 Polarization: 3.08 SS G_CDS: -2.47 Total: 0.61 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.96 -10.15 -42.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.413 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds