Wall clock time and date at job start Tue Mar 31 2020 21:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.50697 * 109.47011 * 119.99845 * 2 1 3 5 5 N 1.29432 * 124.81071 * 299.97479 * 4 2 1 6 6 C 1.30933 * 117.36924 * 180.02562 * 5 4 2 7 7 C 1.35665 * 114.19433 * 359.97438 * 6 5 4 8 8 C 1.46680 * 126.13337 * 180.02562 * 7 6 5 9 9 O 1.21687 * 119.99837 * 180.02562 * 8 7 6 10 10 N 1.34770 * 119.99859 * 0.03017 * 8 7 6 11 11 C 1.46505 * 119.99764 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.52390 * 324.91203 * 11 10 8 13 13 C 1.53039 * 109.49460 * 204.83739 * 11 10 8 14 14 C 1.53039 * 109.53914 * 301.40907 * 13 11 10 15 15 C 1.53190 * 109.31692 * 298.63981 * 14 13 11 16 16 H 1.09000 * 109.70233 * 294.78001 * 15 14 13 17 17 C 1.53001 * 109.59182 * 174.42092 * 15 14 13 18 18 N 1.46928 * 108.77758 * 54.63092 * 15 14 13 19 19 C 1.36929 * 120.63393 * 126.41292 * 18 15 14 20 20 H 1.08004 * 120.00200 * 330.84899 * 19 18 15 21 21 C 1.38809 * 120.00367 * 150.84411 * 19 18 15 22 22 N 1.31620 * 119.99787 * 343.82157 * 21 19 18 23 23 Si 1.86793 * 120.00361 * 163.82161 * 21 19 18 24 24 H 1.48504 * 109.47031 * 94.31122 * 23 21 19 25 25 H 1.48496 * 109.47382 * 214.30849 * 23 21 19 26 26 H 1.48497 * 109.47172 * 334.31467 * 23 21 19 27 27 C 1.46930 * 118.73561 * 306.39954 * 18 15 14 28 28 S 1.70964 * 124.80307 * 120.29257 * 4 2 1 29 29 H 1.09004 * 109.46971 * 299.99744 * 1 2 3 30 30 H 1.09001 * 109.47273 * 60.00226 * 1 2 3 31 31 H 1.08998 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47396 * 240.00002 * 2 1 3 33 33 H 1.09005 * 109.47191 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46924 * 299.99988 * 3 2 1 35 35 H 1.08997 * 109.47441 * 60.00441 * 3 2 1 36 36 H 1.07998 * 122.90696 * 179.97438 * 6 5 4 37 37 H 0.96998 * 120.00209 * 359.97438 * 10 8 7 38 38 H 1.08994 * 109.46435 * 61.43390 * 13 11 10 39 39 H 1.09006 * 109.46067 * 181.38964 * 13 11 10 40 40 H 1.09002 * 109.49892 * 178.68094 * 14 13 11 41 41 H 1.09002 * 109.49913 * 58.59225 * 14 13 11 42 42 H 1.09000 * 109.46376 * 300.71341 * 17 15 14 43 43 H 1.09004 * 109.46969 * 60.70319 * 17 15 14 44 44 H 1.08996 * 109.47412 * 180.70778 * 17 15 14 45 45 H 0.96998 * 120.00378 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58630 * 173.39479 * 27 18 15 47 47 H 1.09005 * 109.58670 * 293.81364 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7780 -0.3499 2.4473 6 6 2.2910 -1.0747 3.4095 7 6 3.0332 -2.1255 2.9788 8 6 3.7237 -3.1024 3.8276 9 8 4.3622 -4.0055 3.3201 10 7 3.6509 -2.9997 5.1694 11 6 4.3410 -3.9751 6.0171 12 1 4.3116 -4.9558 5.5423 13 6 3.6492 -4.0468 7.3804 14 6 3.6610 -2.6630 8.0337 15 6 5.1105 -2.2170 8.2499 16 1 5.5941 -2.8760 8.9710 17 6 5.1324 -0.7796 8.7737 18 7 5.8225 -2.2844 6.9665 19 6 6.4962 -1.1943 6.4842 20 1 6.1630 -0.1984 6.7366 21 6 7.6074 -1.3689 5.6709 22 7 8.2057 -2.5400 5.6167 23 14 8.2538 0.0580 4.6534 24 1 9.3334 0.7506 5.4018 25 1 8.7928 -0.4545 3.3682 26 1 7.1492 1.0125 4.3815 27 6 5.7982 -3.5441 6.2105 28 16 3.0251 -2.1021 1.2168 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.1368 -0.8551 4.4556 37 1 3.1422 -2.2796 5.5738 38 1 2.6190 -4.3771 7.2479 39 1 4.1779 -4.7545 8.0191 40 1 3.1476 -2.7097 8.9941 41 1 3.1540 -1.9496 7.3841 42 1 4.6439 -0.1232 8.0535 43 1 4.6037 -0.7317 9.7257 44 1 6.1648 -0.4600 8.9149 45 1 8.9820 -2.6622 5.0481 46 1 6.2675 -3.3957 5.2380 47 1 6.3363 -4.3133 6.7646 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072127760.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:12 Heat of formation + Delta-G solvation = -3.089102 kcal Electronic energy + Delta-G solvation = -28067.703297 eV Core-core repulsion = 24376.557002 eV Total energy + Delta-G solvation = -3691.146295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40077 -40.55887 -39.10950 -36.39778 -35.82548 -34.53354 -32.69685 -31.77438 -30.59678 -28.04787 -27.87099 -27.12553 -26.61597 -24.00331 -23.76873 -22.71787 -22.01525 -20.49368 -20.38747 -19.13993 -18.26390 -18.11019 -17.18073 -16.65557 -16.28321 -16.11792 -15.82200 -15.62749 -15.37628 -15.27696 -15.11656 -14.77963 -14.61243 -14.45763 -14.04930 -13.80644 -13.64948 -13.00552 -12.97278 -12.91928 -12.69305 -12.64728 -12.63112 -12.54726 -12.43076 -12.15975 -12.14257 -12.09863 -11.96124 -11.58801 -11.41132 -11.19746 -11.06233 -10.62434 -10.56424 -10.53151 -10.13080 -9.89123 -8.58627 -7.84173 -5.27898 -0.80520 0.08616 0.62143 1.35992 1.39515 1.39844 1.46044 2.11634 2.35013 2.47838 2.96274 3.32071 3.62133 3.72008 3.77635 4.00836 4.04628 4.09342 4.12311 4.15369 4.19345 4.45691 4.47897 4.63909 4.73003 4.79631 4.82229 4.82517 4.94621 4.95623 4.97413 5.03627 5.06759 5.09802 5.11942 5.26474 5.31748 5.34145 5.39732 5.56759 5.59688 5.64094 5.72455 5.73001 6.42893 6.49047 6.54467 7.17542 7.19518 7.92297 8.42546 9.21224 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.011411 B = 0.004182 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.138919 B = 6694.051993 C = 7594.934714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.022 4.022 3 C -0.139 4.139 4 C 0.061 3.939 5 N -0.487 5.487 6 C 0.106 3.894 7 C -0.317 4.317 8 C 0.587 3.413 9 O -0.588 6.588 10 N -0.676 5.676 11 C 0.129 3.871 12 H 0.068 0.932 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.154 3.846 16 H 0.015 0.985 17 C -0.129 4.129 18 N -0.594 5.594 19 C -0.234 4.234 20 H 0.076 0.924 21 C -0.052 4.052 22 N -0.935 5.935 23 Si 0.942 3.058 24 H -0.283 1.283 25 H -0.305 1.305 26 H -0.270 1.270 27 C 0.172 3.828 28 S 0.205 5.795 29 H 0.056 0.944 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.198 0.802 37 H 0.407 0.593 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.033 0.967 45 H 0.242 0.758 46 H 0.045 0.955 47 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.320 4.472 -6.101 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.044 4.044 3 C -0.198 4.198 4 C -0.213 4.213 5 N -0.201 5.201 6 C -0.053 4.053 7 C -0.442 4.442 8 C 0.373 3.627 9 O -0.471 6.471 10 N -0.326 5.326 11 C 0.023 3.977 12 H 0.086 0.914 13 C -0.148 4.148 14 C -0.158 4.158 15 C 0.048 3.952 16 H 0.032 0.968 17 C -0.186 4.186 18 N -0.318 5.318 19 C -0.365 4.365 20 H 0.093 0.907 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.772 3.228 24 H -0.210 1.210 25 H -0.232 1.232 26 H -0.194 1.194 27 C 0.045 3.955 28 S 0.465 5.535 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.128 0.872 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.215 0.785 37 H 0.245 0.755 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges -18.599 3.632 -7.231 20.283 hybrid contribution 1.231 0.710 0.625 1.553 sum -17.368 4.342 -6.606 19.082 Atomic orbital electron populations 1.21789 0.91271 1.02625 1.03619 1.20181 0.98069 0.96263 0.89866 1.21821 1.00747 0.93522 1.03674 1.28249 0.97922 0.97167 0.97989 1.66109 1.24684 1.30414 0.98861 1.22436 0.92823 0.88849 1.01151 1.25662 1.13342 1.06448 0.98717 1.17003 0.79492 0.83318 0.82851 1.90788 1.44629 1.36854 1.74780 1.45491 1.51539 1.31488 1.04060 1.21577 0.93755 0.90972 0.91428 0.91375 1.21676 1.00998 0.98724 0.93383 1.21966 0.96616 0.95882 1.01385 1.20783 0.91988 0.95965 0.86426 0.96753 1.21729 1.00765 0.95789 1.00331 1.44262 1.59076 1.09701 1.18775 1.19388 1.04344 0.87736 1.25048 0.90665 1.25662 0.97132 0.98079 1.03824 1.70154 1.21618 1.24625 1.41807 0.85623 0.78559 0.80216 0.78402 1.21005 1.23206 1.19448 1.20844 0.91701 0.86965 0.96024 1.84011 1.44215 1.25221 1.00060 0.92448 0.89040 0.92510 0.87162 0.93442 0.88825 0.92496 0.78517 0.75507 0.89435 0.90564 0.88942 0.91847 0.92993 0.90552 0.94736 0.94880 0.93621 0.98256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.17 71.98 0.66 -1.09 16 2 C -0.02 -0.35 3.35 -11.54 -0.04 -0.39 16 3 C -0.14 -2.15 9.17 71.98 0.66 -1.49 16 4 C 0.06 1.47 5.91 88.46 0.52 1.99 16 5 N -0.49 -13.09 10.49 -190.30 -2.00 -15.08 16 6 C 0.11 3.00 10.93 84.23 0.92 3.92 16 7 C -0.32 -10.62 6.48 23.88 0.15 -10.46 16 8 C 0.59 23.48 7.75 86.45 0.67 24.15 16 9 O -0.59 -28.39 16.63 -4.31 -0.07 -28.46 16 10 N -0.68 -23.98 4.90 -446.15 -2.19 -26.16 16 11 C 0.13 4.86 2.81 45.07 0.13 4.99 16 12 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 13 C -0.11 -3.08 5.59 30.62 0.17 -2.91 16 14 C -0.12 -3.24 5.21 30.67 0.16 -3.08 16 15 C 0.15 5.67 3.50 44.97 0.16 5.83 16 16 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 17 C -0.13 -4.27 7.94 71.98 0.57 -3.70 16 18 N -0.59 -28.17 2.91 -675.23 -1.96 -30.13 16 19 C -0.23 -12.46 8.59 84.03 0.72 -11.74 16 20 H 0.08 3.84 6.22 -2.91 -0.02 3.82 16 21 C -0.05 -2.99 4.93 84.86 0.42 -2.57 16 22 N -0.93 -58.00 11.22 21.65 0.24 -57.76 16 23 Si 0.94 46.96 29.58 68.60 2.03 48.99 16 24 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 25 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 26 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 27 C 0.17 8.45 4.89 86.36 0.42 8.88 16 28 S 0.20 5.84 23.00 -56.49 -1.30 4.54 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.11 1.36 8.12 -2.39 -0.02 1.34 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.20 4.55 7.15 -2.91 -0.02 4.53 16 37 H 0.41 12.15 5.48 -92.71 -0.51 11.64 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.64 6.40 -2.39 -0.02 1.62 16 42 H 0.05 1.71 7.45 -2.39 -0.02 1.70 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.03 1.31 7.62 -2.39 -0.02 1.29 16 45 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 46 H 0.05 2.72 6.11 -2.39 -0.01 2.71 16 47 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 Total: -1.00 -74.54 384.40 1.52 -73.02 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.47 Total: 18.73 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.30 Total: 12.33 kcal Atomic # 7 Polarization: -123.23 SS G_CDS: -5.90 Total: -129.14 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: -0.07 Total: -28.46 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 16 Polarization: 5.84 SS G_CDS: -1.30 Total: 4.54 kcal Total: -74.54 1.52 -73.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127760.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.928 kcal (2) G-P(sol) polarization free energy of solvation -74.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds