Wall clock time and date at job start Tue Mar 31 2020 21:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.50704 * 109.47592 * 120.00014 * 2 1 3 5 5 N 1.29431 * 124.79945 * 300.02700 * 4 2 1 6 6 C 1.30946 * 117.36114 * 180.02562 * 5 4 2 7 7 C 1.35664 * 114.19298 * 359.97438 * 6 5 4 8 8 C 1.46678 * 126.13353 * 180.02562 * 7 6 5 9 9 O 1.21688 * 120.00358 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99496 * 0.02585 * 8 7 6 11 11 C 1.46508 * 119.99511 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.52586 * 34.91273 * 11 10 8 13 13 C 1.53036 * 109.49725 * 154.99942 * 11 10 8 14 14 C 1.53037 * 109.53986 * 181.31061 * 13 11 10 15 15 C 1.53192 * 109.31340 * 298.63599 * 14 13 11 16 16 H 1.08999 * 109.58550 * 294.84188 * 15 14 13 17 17 C 1.53003 * 109.58628 * 174.56115 * 15 14 13 18 18 N 1.46925 * 108.77557 * 54.63568 * 15 14 13 19 19 C 1.36931 * 120.63548 * 126.41321 * 18 15 14 20 20 H 1.08002 * 119.99911 * 330.19921 * 19 18 15 21 21 C 1.38813 * 120.00441 * 150.19557 * 19 18 15 22 22 N 1.31615 * 119.99584 * 344.45947 * 21 19 18 23 23 Si 1.86797 * 120.00188 * 164.46465 * 21 19 18 24 24 H 1.48500 * 109.47184 * 90.00087 * 23 21 19 25 25 H 1.48503 * 109.46826 * 210.00081 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99947 * 23 21 19 27 27 C 1.46928 * 118.73380 * 306.38997 * 18 15 14 28 28 S 1.70952 * 124.80729 * 120.33787 * 4 2 1 29 29 H 1.08997 * 109.47535 * 60.00415 * 1 2 3 30 30 H 1.09008 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47233 * 299.99480 * 1 2 3 32 32 H 1.09000 * 109.47133 * 239.99587 * 2 1 3 33 33 H 1.09002 * 109.47428 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47115 * 299.99861 * 3 2 1 35 35 H 1.08994 * 109.46963 * 59.99760 * 3 2 1 36 36 H 1.07998 * 122.90344 * 180.02562 * 6 5 4 37 37 H 0.97000 * 120.00560 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.46354 * 61.29193 * 13 11 10 39 39 H 1.08998 * 109.45178 * 301.32937 * 13 11 10 40 40 H 1.09003 * 109.50048 * 178.67994 * 14 13 11 41 41 H 1.09003 * 109.49619 * 58.58508 * 14 13 11 42 42 H 1.09002 * 109.46654 * 60.28075 * 17 15 14 43 43 H 1.08997 * 109.47395 * 180.28196 * 17 15 14 44 44 H 1.08999 * 109.47239 * 300.28923 * 17 15 14 45 45 H 0.97000 * 119.99726 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58731 * 293.81865 * 27 18 15 47 47 H 1.09003 * 109.70354 * 173.47140 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7773 -0.3504 2.4472 6 6 2.2906 -1.0751 3.4095 7 6 3.0338 -2.1252 2.9787 8 6 3.7247 -3.1018 3.8275 9 8 4.3641 -4.0043 3.3201 10 7 3.6513 -2.9994 5.1694 11 6 4.3419 -3.9746 6.0171 12 1 5.2754 -4.2746 5.5412 13 6 4.6422 -3.3451 7.3793 14 6 5.3925 -4.3519 8.2542 15 6 4.5121 -5.5859 8.4754 16 1 3.6302 -5.3070 9.0519 17 6 5.3048 -6.6521 9.2342 18 7 4.0993 -6.1129 7.1675 19 6 4.3156 -7.4259 6.8444 20 1 5.1572 -7.9544 7.2672 21 6 3.4531 -8.0776 5.9736 22 7 2.2769 -7.5549 5.6985 23 14 3.9617 -9.6964 5.1925 24 1 3.5350 -10.8215 6.0626 25 1 3.3166 -9.8278 3.8613 26 1 5.4378 -9.7266 5.0324 27 6 3.4496 -5.2043 6.2130 28 16 3.0262 -2.1013 1.2168 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.1350 -0.8563 4.4556 37 1 3.1420 -2.2798 5.5739 38 1 3.7068 -3.0678 7.8655 39 1 5.2567 -2.4556 7.2406 40 1 5.6266 -3.8949 9.2157 41 1 6.3162 -4.6483 7.7572 42 1 5.6145 -6.2551 10.2010 43 1 4.6784 -7.5311 9.3862 44 1 6.1863 -6.9296 8.6562 45 1 1.6744 -8.0101 5.0897 46 1 2.4810 -4.8943 6.6049 47 1 3.3119 -5.7116 5.2581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072127761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:15 Heat of formation + Delta-G solvation = 15.182856 kcal Electronic energy + Delta-G solvation = -27159.585407 eV Core-core repulsion = 23469.231443 eV Total energy + Delta-G solvation = -3690.353964 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21881 -39.20175 -37.57119 -35.65539 -34.44739 -32.82333 -31.26995 -29.96217 -29.43355 -27.47677 -26.35368 -25.75111 -24.87208 -22.79649 -22.26595 -21.46481 -20.37828 -19.54334 -18.85711 -18.21994 -16.95815 -16.42924 -15.72042 -15.25936 -15.14005 -14.94133 -14.52723 -14.18880 -14.14743 -13.81227 -13.79632 -13.53902 -13.36687 -13.07930 -12.74048 -12.42423 -12.41175 -12.00635 -11.86973 -11.62745 -11.53933 -11.45473 -11.31807 -11.12616 -10.90128 -10.68737 -10.56281 -10.40815 -10.26516 -10.14947 -9.94922 -9.69092 -9.50519 -9.45780 -9.41905 -9.02278 -8.58027 -8.41213 -6.59934 -5.73343 -3.17886 0.21863 1.08970 1.62125 2.44391 3.38677 3.43489 3.50238 3.52051 3.53541 3.81693 4.49225 4.54684 4.66667 4.74271 4.92944 5.13076 5.17014 5.32675 5.33684 5.36485 5.45747 5.49100 5.52915 5.56751 5.61196 5.66824 5.82337 5.91497 5.95599 6.04013 6.09168 6.26611 6.29364 6.38791 6.44516 6.47676 6.62214 6.71899 6.87161 7.04571 7.12809 7.29965 7.50243 7.72794 7.78987 7.88231 8.47447 8.52406 9.25283 9.89660 10.45152 11.34911 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.002987 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.571821 B = 9371.327313 C =10613.743618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.017 4.017 3 C -0.139 4.139 4 C 0.038 3.962 5 N -0.473 5.473 6 C 0.085 3.915 7 C -0.282 4.282 8 C 0.588 3.412 9 O -0.526 6.526 10 N -0.706 5.706 11 C 0.118 3.882 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.025 0.975 17 C -0.136 4.136 18 N -0.582 5.582 19 C -0.253 4.253 20 H 0.070 0.930 21 C 0.007 3.993 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.169 3.831 28 S 0.224 5.776 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.180 0.820 37 H 0.393 0.607 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.253 0.747 46 H 0.018 0.982 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.657 18.195 -7.058 19.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.039 4.039 3 C -0.198 4.198 4 C -0.237 4.237 5 N -0.187 5.187 6 C -0.073 4.073 7 C -0.406 4.406 8 C 0.371 3.629 9 O -0.403 6.403 10 N -0.356 5.356 11 C 0.013 3.987 12 H 0.102 0.898 13 C -0.155 4.155 14 C -0.166 4.166 15 C 0.058 3.942 16 H 0.043 0.957 17 C -0.194 4.194 18 N -0.306 5.306 19 C -0.383 4.383 20 H 0.087 0.913 21 C -0.192 4.192 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.042 3.958 28 S 0.483 5.517 29 H 0.084 0.916 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.196 0.804 37 H 0.226 0.774 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.036 0.964 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.173 17.250 -8.265 19.129 hybrid contribution -0.322 -0.298 0.790 0.904 sum -0.494 16.952 -7.474 18.533 Atomic orbital electron populations 1.21810 0.92648 1.02591 1.02877 1.19862 0.97102 0.96104 0.90867 1.21805 1.01183 0.93950 1.02892 1.27520 1.00505 0.98530 0.97161 1.66003 1.23498 1.30724 0.98484 1.22120 0.94590 0.90516 1.00084 1.25939 1.11505 1.05091 0.98109 1.16672 0.80552 0.83414 0.82229 1.90891 1.41956 1.33756 1.73691 1.45851 1.53202 1.31610 1.04976 1.22079 0.97935 0.89942 0.88766 0.89757 1.21685 1.00275 0.97955 0.95540 1.22049 0.99555 0.96906 0.98063 1.20493 0.94088 0.91681 0.87929 0.95738 1.21796 1.00385 0.99560 0.97635 1.44003 1.70261 1.06657 1.09658 1.19110 1.06494 0.86907 1.25785 0.91254 1.25090 0.94706 0.97816 1.01632 1.70000 1.06881 1.39927 1.37536 0.86338 0.78234 0.83629 0.78820 1.21469 1.21582 1.20393 1.21061 0.91085 0.87231 0.96450 1.84122 1.43226 1.23583 1.00764 0.91588 0.92354 0.91341 0.89207 0.92496 0.91596 0.91357 0.80357 0.77391 0.92173 0.92986 0.92594 0.92028 0.94331 0.91989 0.92787 0.93736 0.96419 0.88881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.17 37.15 0.34 -0.72 16 2 C -0.02 -0.14 3.35 -91.77 -0.31 -0.45 16 3 C -0.14 -0.98 9.17 37.16 0.34 -0.64 16 4 C 0.04 0.42 5.90 -13.29 -0.08 0.34 16 5 N -0.47 -5.89 10.49 -11.50 -0.12 -6.01 16 6 C 0.09 1.07 10.93 -18.85 -0.21 0.86 16 7 C -0.28 -4.20 6.48 -37.10 -0.24 -4.44 16 8 C 0.59 10.74 7.75 -12.85 -0.10 10.64 16 9 O -0.53 -11.97 16.63 5.20 0.09 -11.89 16 10 N -0.71 -11.63 5.06 -55.00 -0.28 -11.91 16 11 C 0.12 2.28 2.60 -67.81 -0.18 2.10 16 12 H 0.08 1.86 7.58 -51.93 -0.39 1.46 16 13 C -0.12 -1.85 5.35 -26.69 -0.14 -1.99 16 14 C -0.13 -2.12 5.37 -26.61 -0.14 -2.26 16 15 C 0.16 3.35 3.49 -67.60 -0.24 3.12 16 16 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.14 -2.55 7.95 37.16 0.30 -2.25 16 18 N -0.58 -14.48 2.99 -164.77 -0.49 -14.98 16 19 C -0.25 -6.95 8.58 -15.06 -0.13 -7.08 16 20 H 0.07 1.85 6.24 -52.49 -0.33 1.52 16 21 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 22 N -0.90 -26.80 11.23 55.49 0.62 -26.17 16 23 Si 0.90 22.51 29.58 -169.99 -5.03 17.48 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 C 0.17 4.08 4.86 -3.71 -0.02 4.07 16 28 S 0.22 2.88 23.00 -107.50 -2.47 0.41 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.18 1.75 7.15 -52.49 -0.38 1.37 16 37 H 0.39 5.02 7.31 -40.82 -0.30 4.72 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 1.25 7.66 -51.93 -0.40 0.86 16 44 H 0.05 1.03 7.43 -51.93 -0.39 0.64 16 45 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 2.67 6.15 -51.93 -0.32 2.35 16 LS Contribution 388.00 15.07 5.85 5.85 Total: -1.00 -33.26 388.00 -10.27 -43.53 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.55 Total: 2.27 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.89 Total: 1.41 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.27 Total: -59.07 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.89 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.48 kcal Atomic # 16 Polarization: 2.88 SS G_CDS: -2.47 Total: 0.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.26 -10.27 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.712 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds