Wall clock time and date at job start Tue Mar 31 2020 21:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47275 * 2 1 4 4 C 1.50704 * 109.47592 * 120.00014 * 2 1 3 5 5 N 1.29431 * 124.79945 * 300.02700 * 4 2 1 6 6 C 1.30946 * 117.36114 * 180.02562 * 5 4 2 7 7 C 1.35664 * 114.19298 * 359.97438 * 6 5 4 8 8 C 1.46678 * 126.13353 * 180.02562 * 7 6 5 9 9 O 1.21688 * 120.00358 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99496 * 0.02585 * 8 7 6 11 11 C 1.46508 * 119.99511 * 180.02562 * 10 8 7 12 12 H 1.08992 * 109.52586 * 34.91273 * 11 10 8 13 13 C 1.53036 * 109.49725 * 154.99942 * 11 10 8 14 14 C 1.53037 * 109.53986 * 181.31061 * 13 11 10 15 15 C 1.53192 * 109.31340 * 298.63599 * 14 13 11 16 16 H 1.08999 * 109.58550 * 294.84188 * 15 14 13 17 17 C 1.53003 * 109.58628 * 174.56115 * 15 14 13 18 18 N 1.46925 * 108.77557 * 54.63568 * 15 14 13 19 19 C 1.36931 * 120.63548 * 126.41321 * 18 15 14 20 20 H 1.08002 * 119.99911 * 330.19921 * 19 18 15 21 21 C 1.38813 * 120.00441 * 150.19557 * 19 18 15 22 22 N 1.31615 * 119.99584 * 344.45947 * 21 19 18 23 23 Si 1.86797 * 120.00188 * 164.46465 * 21 19 18 24 24 H 1.48500 * 109.47184 * 90.00087 * 23 21 19 25 25 H 1.48503 * 109.46826 * 210.00081 * 23 21 19 26 26 H 1.48504 * 109.47133 * 329.99947 * 23 21 19 27 27 C 1.46928 * 118.73380 * 306.38997 * 18 15 14 28 28 S 1.70952 * 124.80729 * 120.33787 * 4 2 1 29 29 H 1.08997 * 109.47535 * 60.00415 * 1 2 3 30 30 H 1.09008 * 109.47155 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47233 * 299.99480 * 1 2 3 32 32 H 1.09000 * 109.47133 * 239.99587 * 2 1 3 33 33 H 1.09002 * 109.47428 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47115 * 299.99861 * 3 2 1 35 35 H 1.08994 * 109.46963 * 59.99760 * 3 2 1 36 36 H 1.07998 * 122.90344 * 180.02562 * 6 5 4 37 37 H 0.97000 * 120.00560 * 359.97438 * 10 8 7 38 38 H 1.09006 * 109.46354 * 61.29193 * 13 11 10 39 39 H 1.08998 * 109.45178 * 301.32937 * 13 11 10 40 40 H 1.09003 * 109.50048 * 178.67994 * 14 13 11 41 41 H 1.09003 * 109.49619 * 58.58508 * 14 13 11 42 42 H 1.09002 * 109.46654 * 60.28075 * 17 15 14 43 43 H 1.08997 * 109.47395 * 180.28196 * 17 15 14 44 44 H 1.08999 * 109.47239 * 300.28923 * 17 15 14 45 45 H 0.97000 * 119.99726 * 179.97438 * 22 21 19 46 46 H 1.08999 * 109.58731 * 293.81865 * 27 18 15 47 47 H 1.09003 * 109.70354 * 173.47140 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7773 -0.3504 2.4472 6 6 2.2906 -1.0751 3.4095 7 6 3.0338 -2.1252 2.9787 8 6 3.7247 -3.1018 3.8275 9 8 4.3641 -4.0043 3.3201 10 7 3.6513 -2.9994 5.1694 11 6 4.3419 -3.9746 6.0171 12 1 5.2754 -4.2746 5.5412 13 6 4.6422 -3.3451 7.3793 14 6 5.3925 -4.3519 8.2542 15 6 4.5121 -5.5859 8.4754 16 1 3.6302 -5.3070 9.0519 17 6 5.3048 -6.6521 9.2342 18 7 4.0993 -6.1129 7.1675 19 6 4.3156 -7.4259 6.8444 20 1 5.1572 -7.9544 7.2672 21 6 3.4531 -8.0776 5.9736 22 7 2.2769 -7.5549 5.6985 23 14 3.9617 -9.6964 5.1925 24 1 3.5350 -10.8215 6.0626 25 1 3.3166 -9.8278 3.8613 26 1 5.4378 -9.7266 5.0324 27 6 3.4496 -5.2043 6.2130 28 16 3.0262 -2.1013 1.2168 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 2.1350 -0.8563 4.4556 37 1 3.1420 -2.2798 5.5739 38 1 3.7068 -3.0678 7.8655 39 1 5.2567 -2.4556 7.2406 40 1 5.6266 -3.8949 9.2157 41 1 6.3162 -4.6483 7.7572 42 1 5.6145 -6.2551 10.2010 43 1 4.6784 -7.5311 9.3862 44 1 6.1863 -6.9296 8.6562 45 1 1.6744 -8.0101 5.0897 46 1 2.4810 -4.8943 6.6049 47 1 3.3119 -5.7116 5.2581 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072127761.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:14 Heat of formation + Delta-G solvation = -6.954069 kcal Electronic energy + Delta-G solvation = -27160.545336 eV Core-core repulsion = 23469.231443 eV Total energy + Delta-G solvation = -3691.313893 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39705 -40.52324 -39.19273 -36.40994 -36.06246 -34.67918 -32.69727 -31.79889 -30.69141 -28.04309 -27.78190 -27.17329 -26.50127 -24.15456 -23.66563 -22.68844 -21.84556 -21.15139 -20.13743 -19.19848 -18.33710 -18.13801 -17.32016 -16.76447 -16.32832 -16.12561 -15.81677 -15.57592 -15.34439 -15.30132 -15.11348 -14.95944 -14.69907 -14.46361 -14.13829 -13.78422 -13.51977 -13.09887 -12.97404 -12.80021 -12.73870 -12.65729 -12.64495 -12.55993 -12.31215 -12.16196 -12.14030 -12.02888 -11.94979 -11.70848 -11.52482 -11.24901 -11.14701 -10.63139 -10.59730 -10.54361 -10.22162 -9.96193 -8.62940 -7.86962 -5.32950 -0.83425 0.06276 0.61618 1.35818 1.39336 1.43492 1.50890 2.05983 2.18379 2.49533 2.95144 3.29856 3.59843 3.72096 3.77303 3.94859 4.04495 4.08293 4.12547 4.12859 4.25090 4.37491 4.46150 4.58972 4.70509 4.79131 4.80780 4.83075 4.88366 4.95233 4.97433 5.00601 5.06454 5.10130 5.17411 5.27000 5.30696 5.34804 5.39308 5.40648 5.54559 5.60041 5.69623 5.76999 6.37656 6.45409 6.51051 7.11142 7.16831 7.88758 8.38180 9.18261 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.015234 B = 0.002987 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.571821 B = 9371.327313 C =10613.743618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.023 4.023 3 C -0.135 4.135 4 C 0.064 3.936 5 N -0.487 5.487 6 C 0.111 3.889 7 C -0.322 4.322 8 C 0.587 3.413 9 O -0.584 6.584 10 N -0.693 5.693 11 C 0.133 3.867 12 H 0.054 0.946 13 C -0.107 4.107 14 C -0.118 4.118 15 C 0.152 3.848 16 H 0.023 0.977 17 C -0.130 4.130 18 N -0.602 5.602 19 C -0.250 4.250 20 H 0.074 0.926 21 C -0.054 4.054 22 N -0.933 5.933 23 Si 0.956 3.044 24 H -0.278 1.278 25 H -0.300 1.300 26 H -0.272 1.272 27 C 0.181 3.819 28 S 0.205 5.795 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.109 0.891 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.207 0.793 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.037 0.963 44 H 0.045 0.955 45 H 0.244 0.756 46 H -0.001 1.001 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.288 21.089 -6.416 22.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.210 4.210 5 N -0.201 5.201 6 C -0.048 4.048 7 C -0.446 4.446 8 C 0.373 3.627 9 O -0.465 6.465 10 N -0.344 5.344 11 C 0.027 3.973 12 H 0.072 0.928 13 C -0.145 4.145 14 C -0.157 4.157 15 C 0.047 3.953 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.327 5.327 19 C -0.380 4.380 20 H 0.092 0.908 21 C -0.249 4.249 22 N -0.580 5.580 23 Si 0.784 3.216 24 H -0.204 1.204 25 H -0.227 1.227 26 H -0.197 1.197 27 C 0.054 3.946 28 S 0.465 5.535 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.251 0.749 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.053 0.947 46 H 0.017 0.983 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.207 20.184 -7.578 21.561 hybrid contribution -0.494 -1.086 0.572 1.323 sum -0.287 19.098 -7.006 20.344 Atomic orbital electron populations 1.21812 0.91851 1.02324 1.03679 1.20185 0.97630 0.96764 0.89909 1.21798 1.01081 0.92889 1.03659 1.28251 0.97912 0.96808 0.98046 1.66150 1.24196 1.30915 0.98823 1.22567 0.92066 0.88749 1.01467 1.25573 1.14260 1.06161 0.98599 1.17114 0.79695 0.83105 0.82771 1.90853 1.44621 1.36289 1.74718 1.45625 1.52947 1.31393 1.04471 1.21606 0.95335 0.89211 0.91168 0.92791 1.21663 1.01690 0.98573 0.92611 1.21956 0.98119 0.95388 1.00242 1.20822 0.94884 0.93778 0.85771 0.95957 1.21732 0.99210 0.98381 0.99369 1.44302 1.70293 1.06166 1.11892 1.19451 1.05824 0.88114 1.24655 0.90797 1.25813 0.95022 1.01031 1.03045 1.70161 1.07966 1.41254 1.38587 0.85442 0.77959 0.80695 0.77461 1.20435 1.22715 1.19683 1.20733 0.91491 0.88684 0.93741 1.84173 1.44225 1.24925 1.00145 0.89014 0.93164 0.92350 0.87285 0.92663 0.89124 0.92325 0.77618 0.74925 0.90560 0.89428 0.88409 0.92910 0.90195 0.94373 0.93573 0.94722 0.98284 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.17 71.98 0.66 -1.09 16 2 C -0.02 -0.31 3.35 -11.54 -0.04 -0.35 16 3 C -0.14 -1.54 9.17 71.98 0.66 -0.88 16 4 C 0.06 1.36 5.90 88.46 0.52 1.88 16 5 N -0.49 -11.30 10.49 -190.29 -2.00 -13.30 16 6 C 0.11 2.63 10.93 84.23 0.92 3.55 16 7 C -0.32 -9.66 6.48 23.88 0.15 -9.51 16 8 C 0.59 22.26 7.75 86.45 0.67 22.93 16 9 O -0.58 -28.34 16.63 -4.31 -0.07 -28.41 16 10 N -0.69 -22.88 5.06 -446.13 -2.26 -25.14 16 11 C 0.13 5.19 2.60 45.07 0.12 5.30 16 12 H 0.05 2.46 7.58 -2.39 -0.02 2.44 16 13 C -0.11 -3.11 5.35 30.62 0.16 -2.95 16 14 C -0.12 -3.61 5.37 30.67 0.16 -3.44 16 15 C 0.15 6.04 3.49 44.98 0.16 6.19 16 16 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 17 C -0.13 -4.65 7.95 71.98 0.57 -4.08 16 18 N -0.60 -30.66 2.99 -675.22 -2.02 -32.68 16 19 C -0.25 -14.13 8.58 84.03 0.72 -13.40 16 20 H 0.07 4.02 6.24 -2.91 -0.02 4.00 16 21 C -0.05 -3.20 4.94 84.86 0.42 -2.78 16 22 N -0.93 -58.61 11.23 21.65 0.24 -58.37 16 23 Si 0.96 48.07 29.58 68.60 2.03 50.10 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 25 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 26 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 27 C 0.18 9.12 4.86 86.36 0.42 9.54 16 28 S 0.20 5.34 23.00 -56.49 -1.30 4.04 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.06 0.87 8.14 -2.38 -0.02 0.86 16 32 H 0.11 1.14 8.12 -2.39 -0.02 1.12 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.21 3.50 7.15 -2.91 -0.02 3.48 16 37 H 0.41 9.92 7.31 -92.71 -0.68 9.24 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.52 7.66 -2.39 -0.02 1.50 16 44 H 0.05 1.70 7.43 -2.39 -0.02 1.69 16 45 H 0.24 15.05 8.31 -92.71 -0.77 14.28 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.04 2.43 6.15 -2.39 -0.01 2.41 16 Total: -1.00 -78.59 388.00 1.21 -77.39 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.29 Total: 15.44 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: 6.28 Total: 10.92 kcal Atomic # 7 Polarization: -123.45 SS G_CDS: -6.03 Total: -129.48 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.07 Total: -28.41 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.10 kcal Atomic # 16 Polarization: 5.34 SS G_CDS: -1.30 Total: 4.04 kcal Total: -78.59 1.21 -77.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072127761.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.431 kcal (2) G-P(sol) polarization free energy of solvation -78.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds