Wall clock time and date at job start Tue Mar 31 2020 19:34:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 H 1.08996 * 109.88041 * 55.80227 * 3 2 1 5 5 C 1.54321 * 109.88026 * 294.77856 * 3 2 1 6 6 H 1.09002 * 110.72464 * 336.93450 * 5 3 2 7 7 N 1.46504 * 110.71714 * 100.02859 * 5 3 2 8 8 C 1.34775 * 119.99974 * 204.99892 * 7 5 3 9 9 O 1.21568 * 120.00098 * 0.02562 * 8 7 5 10 10 C 1.47760 * 119.99882 * 180.02562 * 8 7 5 11 11 N 1.32886 * 119.68934 * 359.97438 * 10 8 7 12 12 C 1.31289 * 121.71812 * 179.97438 * 11 10 8 13 13 C 1.39355 * 120.88172 * 0.02562 * 12 11 10 14 14 O 1.35722 * 120.35872 * 179.97438 * 13 12 11 15 15 C 1.42902 * 117.00209 * 0.02562 * 14 13 12 16 16 C 1.39044 * 119.28171 * 0.27530 * 13 12 11 17 17 C 1.38689 * 118.42336 * 359.48012 * 16 13 12 18 18 F 1.35098 * 120.46450 * 180.22190 * 17 16 13 19 19 C 1.55156 * 102.94504 * 218.39428 * 5 3 2 20 20 C 1.54907 * 101.58387 * 35.50096 * 19 5 3 21 21 N 1.47032 * 109.88214 * 176.97671 * 3 2 1 22 22 C 1.36935 * 125.64491 * 298.39168 * 21 3 2 23 23 H 1.07999 * 120.00410 * 345.37644 * 22 21 3 24 24 C 1.38808 * 119.99995 * 165.38105 * 22 21 3 25 25 N 1.31621 * 120.00091 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47170 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47026 * 119.99720 * 26 24 22 29 29 H 1.48504 * 109.46840 * 239.99675 * 26 24 22 30 30 H 1.09009 * 109.46889 * 65.58378 * 1 2 3 31 31 H 1.09001 * 109.47350 * 185.57906 * 1 2 3 32 32 H 1.08993 * 109.47392 * 305.58556 * 1 2 3 33 33 H 1.08996 * 109.47387 * 239.99152 * 2 1 3 34 34 H 1.09006 * 109.46615 * 119.99418 * 2 1 3 35 35 H 0.97000 * 119.99960 * 25.00786 * 7 5 3 36 36 H 1.08004 * 119.55835 * 179.97438 * 12 11 10 37 37 H 1.09008 * 109.46905 * 299.99689 * 15 14 13 38 38 H 1.08999 * 109.47303 * 59.99581 * 15 14 13 39 39 H 1.09001 * 109.47051 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.78980 * 179.70989 * 16 13 12 41 41 H 1.09001 * 111.00738 * 153.58119 * 19 5 3 42 42 H 1.09006 * 111.00026 * 277.42838 * 19 5 3 43 43 H 1.08994 * 110.37029 * 204.15180 * 20 19 5 44 44 H 1.09006 * 110.36259 * 81.83029 * 20 19 5 45 45 H 0.96999 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6203 1.9840 0.8478 5 6 1.6414 2.1400 -1.3176 6 1 1.4636 1.4064 -2.1040 7 7 0.4593 2.9828 -1.1209 8 6 -0.3447 3.2700 -2.1638 9 8 -0.0893 2.8292 -3.2676 10 6 -1.5366 4.1205 -1.9655 11 7 -1.8101 4.5986 -0.7562 12 6 -2.8579 5.3583 -0.5351 13 6 -3.7294 5.6935 -1.5695 14 8 -4.8096 6.4792 -1.3288 15 6 -4.9964 6.9319 0.0136 16 6 -3.4838 5.2092 -2.8495 17 6 -2.3658 4.4137 -3.0511 18 9 -2.0854 3.9248 -4.2789 19 6 2.8863 3.0074 -1.6421 20 6 4.0372 2.0988 -1.1426 21 7 3.5084 1.4537 0.0729 22 6 4.2603 0.9480 1.0996 23 1 3.7939 0.7100 2.0442 24 6 5.6219 0.7412 0.9262 25 7 6.1902 1.0308 -0.2251 26 14 6.6477 0.0520 2.3270 27 1 5.7778 -0.1875 3.5064 28 1 7.2696 -1.2278 1.9019 29 1 7.7115 1.0240 2.6863 30 1 -0.3633 0.4248 -0.9358 31 1 -0.3634 -1.0228 0.0999 32 1 -0.3634 0.5980 0.8357 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.2554 3.3344 -0.2402 36 1 -3.0473 5.7276 0.4620 37 1 -5.1063 6.0724 0.6750 38 1 -4.1321 7.5198 0.3224 39 1 -5.8937 7.5484 0.0676 40 1 -4.1458 5.4500 -3.6681 41 1 2.9681 3.1880 -2.7139 42 1 2.8625 3.9469 -1.0899 43 1 4.9161 2.6971 -0.9029 44 1 4.2816 1.3484 -1.8946 45 1 7.1416 0.8860 -0.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087596679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:31 Heat of formation + Delta-G solvation = -52.755321 kcal Electronic energy + Delta-G solvation = -29508.799865 eV Core-core repulsion = 25249.286705 eV Total energy + Delta-G solvation = -4259.513160 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.20117 -41.19053 -39.72065 -38.46756 -37.48113 -34.04243 -32.90828 -32.59491 -31.71552 -30.85708 -28.93750 -28.14467 -26.58489 -25.09772 -24.29924 -23.42903 -22.18783 -20.85647 -20.14665 -19.74453 -18.99488 -18.32426 -17.68425 -16.80631 -16.68573 -16.56839 -15.94318 -15.83202 -15.31822 -15.04620 -14.74527 -14.56253 -13.95463 -13.91494 -13.76026 -13.70443 -13.41711 -13.24782 -12.96268 -12.65696 -12.58377 -12.12806 -11.93794 -11.89134 -11.61165 -11.11592 -10.88563 -10.81907 -10.57835 -10.48002 -10.39412 -10.21785 -10.03228 -9.97129 -9.76975 -9.63679 -9.62666 -9.03764 -8.60344 -8.51108 -6.77872 -5.73121 -3.09278 0.20487 0.54202 2.38314 2.56881 3.14483 3.40014 3.45892 3.48174 3.49143 3.73079 3.82063 3.98961 4.36584 4.47369 4.50029 4.55800 4.57465 4.86341 4.94473 5.17893 5.30952 5.39272 5.41267 5.55292 5.58579 5.80591 5.83931 5.88573 5.92459 6.11236 6.28409 6.34049 6.46534 6.48777 6.50890 6.60082 6.71802 6.77776 6.98649 7.11973 7.21693 7.54240 7.63934 7.76661 7.81812 8.28168 8.36467 9.20509 9.81464 10.49640 11.38959 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002627 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.844618 B =10655.945896 C =11137.490360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.097 0.903 7 N -0.690 5.690 8 C 0.569 3.431 9 O -0.526 6.526 10 C 0.013 3.987 11 N -0.390 5.390 12 C 0.009 3.991 13 C 0.128 3.872 14 O -0.303 6.303 15 C 0.020 3.980 16 C -0.161 4.161 17 C 0.155 3.845 18 F -0.096 7.096 19 C -0.157 4.157 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.226 4.226 23 H 0.076 0.924 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.047 0.953 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.173 0.827 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.162 0.838 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.028 0.972 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.316 11.635 -0.650 26.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.114 0.886 7 N -0.340 5.340 8 C 0.352 3.648 9 O -0.402 6.402 10 C -0.127 4.127 11 N -0.101 5.101 12 C -0.153 4.153 13 C 0.079 3.921 14 O -0.214 6.214 15 C -0.075 4.075 16 C -0.188 4.188 17 C 0.132 3.868 18 F -0.074 7.074 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.354 4.354 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.243 0.757 36 H 0.190 0.810 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.126 0.874 40 H 0.180 0.820 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.046 0.954 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -22.433 11.081 -0.902 25.037 hybrid contribution -0.071 -0.019 0.502 0.507 sum -22.504 11.062 -0.400 25.079 Atomic orbital electron populations 1.21768 0.97284 1.00419 1.00963 1.22007 0.93540 0.99124 1.02409 1.21078 0.87035 0.93367 0.93217 0.94585 1.22204 0.83207 0.92439 0.99012 0.88551 1.45868 1.25892 1.50737 1.11504 1.17457 0.81708 0.80437 0.85150 1.90862 1.72766 1.52644 1.23939 1.21414 0.98885 1.03535 0.88839 1.67508 1.16191 1.05647 1.20758 1.23073 0.92367 1.00272 0.99605 1.20008 0.87693 0.90596 0.93787 1.86065 1.41354 1.62364 1.31626 1.23279 1.03531 1.00099 0.80580 1.20823 0.99079 1.01587 0.97327 1.18251 0.93419 0.93711 0.81430 1.91659 1.92596 1.84674 1.38506 1.23439 0.96636 0.99119 1.00437 1.21430 0.93073 0.92888 0.87668 1.44451 0.98346 1.68368 1.20690 1.18984 0.89903 1.35668 0.90850 0.90655 1.24910 0.97245 1.01009 0.96962 1.69941 1.10560 1.52965 1.22824 0.86086 0.80254 0.78480 0.81180 1.20454 1.21722 1.21794 0.93412 0.93726 0.93404 0.92337 0.91695 0.75692 0.80997 0.91729 0.91708 0.87376 0.82024 0.91817 0.91950 0.90783 0.95353 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.58 37.15 0.36 -1.92 16 2 C -0.13 -2.49 5.41 -26.73 -0.14 -2.64 16 3 C 0.16 3.26 2.94 -66.95 -0.20 3.07 16 4 H 0.04 0.72 7.71 -51.93 -0.40 0.32 16 5 C 0.14 2.53 2.02 -66.10 -0.13 2.40 16 6 H 0.10 1.94 7.18 -51.93 -0.37 1.56 16 7 N -0.69 -11.00 4.90 -53.00 -0.26 -11.26 16 8 C 0.57 9.35 7.80 -12.37 -0.10 9.25 16 9 O -0.53 -10.27 14.95 5.31 0.08 -10.19 16 10 C 0.01 0.18 6.75 -82.97 -0.56 -0.38 16 11 N -0.39 -4.48 9.52 -9.63 -0.09 -4.57 16 12 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 13 C 0.13 1.05 6.72 -38.87 -0.26 0.79 16 14 O -0.30 -2.02 10.50 -18.87 -0.20 -2.22 16 15 C 0.02 0.06 9.82 101.05 0.99 1.05 16 16 C -0.16 -1.49 10.10 -39.12 -0.40 -1.88 16 17 C 0.16 1.91 7.31 -38.86 -0.28 1.63 16 18 F -0.10 -1.37 15.54 2.25 0.03 -1.34 16 19 C -0.16 -3.13 6.77 -24.58 -0.17 -3.30 16 20 C 0.17 4.25 5.41 -2.53 -0.01 4.24 16 21 N -0.59 -14.77 3.13 -162.57 -0.51 -15.28 16 22 C -0.23 -6.12 9.75 -15.06 -0.15 -6.27 16 23 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 24 C 0.00 -0.12 5.47 -17.43 -0.10 -0.22 16 25 N -0.92 -26.69 10.57 55.49 0.59 -26.11 16 26 Si 0.91 21.88 29.55 -169.99 -5.02 16.85 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.05 0.75 7.40 -51.92 -0.38 0.37 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 1.19 8.07 -51.93 -0.42 0.77 16 34 H 0.06 1.31 7.90 -51.93 -0.41 0.90 16 35 H 0.41 5.87 7.68 -40.82 -0.31 5.56 16 36 H 0.17 0.86 6.31 -52.48 -0.33 0.53 16 37 H 0.06 0.12 7.67 -51.92 -0.40 -0.27 16 38 H 0.06 0.13 7.67 -51.93 -0.40 -0.27 16 39 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.99 6.93 -51.93 -0.36 1.63 16 44 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -32.51 373.53 -7.36 -39.88 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.29 Total: 2.89 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -1.32 Total: 5.71 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.27 Total: -57.22 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -0.12 Total: -12.41 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.34 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.51 -7.36 -39.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087596679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.878 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds