Wall clock time and date at job start Tue Mar 31 2020 19:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 H 1.08996 * 109.88041 * 55.80227 * 3 2 1 5 5 C 1.54321 * 109.88026 * 294.77856 * 3 2 1 6 6 H 1.09002 * 110.72464 * 336.93450 * 5 3 2 7 7 N 1.46504 * 110.71714 * 100.02859 * 5 3 2 8 8 C 1.34775 * 119.99974 * 204.99892 * 7 5 3 9 9 O 1.21568 * 120.00098 * 0.02562 * 8 7 5 10 10 C 1.47760 * 119.99882 * 180.02562 * 8 7 5 11 11 N 1.32886 * 119.68934 * 359.97438 * 10 8 7 12 12 C 1.31289 * 121.71812 * 179.97438 * 11 10 8 13 13 C 1.39355 * 120.88172 * 0.02562 * 12 11 10 14 14 O 1.35722 * 120.35872 * 179.97438 * 13 12 11 15 15 C 1.42902 * 117.00209 * 0.02562 * 14 13 12 16 16 C 1.39044 * 119.28171 * 0.27530 * 13 12 11 17 17 C 1.38689 * 118.42336 * 359.48012 * 16 13 12 18 18 F 1.35098 * 120.46450 * 180.22190 * 17 16 13 19 19 C 1.55156 * 102.94504 * 218.39428 * 5 3 2 20 20 C 1.54907 * 101.58387 * 35.50096 * 19 5 3 21 21 N 1.47032 * 109.88214 * 176.97671 * 3 2 1 22 22 C 1.36935 * 125.64491 * 298.39168 * 21 3 2 23 23 H 1.07999 * 120.00410 * 345.37644 * 22 21 3 24 24 C 1.38808 * 119.99995 * 165.38105 * 22 21 3 25 25 N 1.31621 * 120.00091 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00140 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47170 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47026 * 119.99720 * 26 24 22 29 29 H 1.48504 * 109.46840 * 239.99675 * 26 24 22 30 30 H 1.09009 * 109.46889 * 65.58378 * 1 2 3 31 31 H 1.09001 * 109.47350 * 185.57906 * 1 2 3 32 32 H 1.08993 * 109.47392 * 305.58556 * 1 2 3 33 33 H 1.08996 * 109.47387 * 239.99152 * 2 1 3 34 34 H 1.09006 * 109.46615 * 119.99418 * 2 1 3 35 35 H 0.97000 * 119.99960 * 25.00786 * 7 5 3 36 36 H 1.08004 * 119.55835 * 179.97438 * 12 11 10 37 37 H 1.09008 * 109.46905 * 299.99689 * 15 14 13 38 38 H 1.08999 * 109.47303 * 59.99581 * 15 14 13 39 39 H 1.09001 * 109.47051 * 180.02562 * 15 14 13 40 40 H 1.08001 * 120.78980 * 179.70989 * 16 13 12 41 41 H 1.09001 * 111.00738 * 153.58119 * 19 5 3 42 42 H 1.09006 * 111.00026 * 277.42838 * 19 5 3 43 43 H 1.08994 * 110.37029 * 204.15180 * 20 19 5 44 44 H 1.09006 * 110.36259 * 81.83029 * 20 19 5 45 45 H 0.96999 * 120.00012 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6203 1.9840 0.8478 5 6 1.6414 2.1400 -1.3176 6 1 1.4636 1.4064 -2.1040 7 7 0.4593 2.9828 -1.1209 8 6 -0.3447 3.2700 -2.1638 9 8 -0.0893 2.8292 -3.2676 10 6 -1.5366 4.1205 -1.9655 11 7 -1.8101 4.5986 -0.7562 12 6 -2.8579 5.3583 -0.5351 13 6 -3.7294 5.6935 -1.5695 14 8 -4.8096 6.4792 -1.3288 15 6 -4.9964 6.9319 0.0136 16 6 -3.4838 5.2092 -2.8495 17 6 -2.3658 4.4137 -3.0511 18 9 -2.0854 3.9248 -4.2789 19 6 2.8863 3.0074 -1.6421 20 6 4.0372 2.0988 -1.1426 21 7 3.5084 1.4537 0.0729 22 6 4.2603 0.9480 1.0996 23 1 3.7939 0.7100 2.0442 24 6 5.6219 0.7412 0.9262 25 7 6.1902 1.0308 -0.2251 26 14 6.6477 0.0520 2.3270 27 1 5.7778 -0.1875 3.5064 28 1 7.2696 -1.2278 1.9019 29 1 7.7115 1.0240 2.6863 30 1 -0.3633 0.4248 -0.9358 31 1 -0.3634 -1.0228 0.0999 32 1 -0.3634 0.5980 0.8357 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.2554 3.3344 -0.2402 36 1 -3.0473 5.7276 0.4620 37 1 -5.1063 6.0724 0.6750 38 1 -4.1321 7.5198 0.3224 39 1 -5.8937 7.5484 0.0676 40 1 -4.1458 5.4500 -3.6681 41 1 2.9681 3.1880 -2.7139 42 1 2.8625 3.9469 -1.0899 43 1 4.9161 2.6971 -0.9029 44 1 4.2816 1.3484 -1.8946 45 1 7.1416 0.8860 -0.3463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087596679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:30 Heat of formation + Delta-G solvation = -74.932294 kcal Electronic energy + Delta-G solvation = -29509.761530 eV Core-core repulsion = 25249.286705 eV Total energy + Delta-G solvation = -4260.474826 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 337.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.16109 -41.96556 -40.94302 -39.52022 -38.78836 -35.67100 -34.35559 -33.65990 -33.32640 -31.83838 -30.69866 -28.58794 -28.06665 -26.54844 -25.63130 -24.34674 -23.57003 -22.35184 -21.72688 -21.33402 -19.65915 -19.27130 -18.75477 -18.67626 -17.43618 -17.36974 -17.30841 -16.69705 -16.58812 -16.26350 -15.94820 -15.73905 -15.69024 -15.37268 -15.10011 -14.67223 -14.39819 -14.30080 -14.26488 -13.86580 -13.76576 -13.55474 -13.24089 -12.91587 -12.89499 -12.71193 -12.63663 -12.49287 -12.22884 -12.03405 -11.97689 -11.91452 -11.57863 -11.40945 -11.36055 -10.83621 -10.73103 -10.67369 -10.09707 -9.67094 -8.82295 -7.84218 -5.22389 -0.64589 -0.19143 1.48122 1.49108 1.55439 1.59324 1.80461 1.99450 2.50870 2.52692 2.89435 2.98508 3.34955 3.35776 3.49798 3.65458 3.75247 3.83581 3.89946 4.02521 4.18029 4.35382 4.40368 4.42365 4.43268 4.45253 4.60327 4.63950 4.70686 4.74287 4.84118 4.85279 5.00920 5.12288 5.15235 5.17556 5.28732 5.44740 5.49636 5.57619 5.64334 5.72128 5.97982 6.24088 6.28300 6.57172 7.09748 7.10692 7.77262 8.44977 9.27465 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.019496 B = 0.002627 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.844618 B =10655.945896 C =11137.490360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.052 0.948 5 C 0.154 3.846 6 H 0.081 0.919 7 N -0.681 5.681 8 C 0.569 3.431 9 O -0.565 6.565 10 C -0.014 4.014 11 N -0.399 5.399 12 C 0.020 3.980 13 C 0.148 3.852 14 O -0.307 6.307 15 C 0.005 3.995 16 C -0.159 4.159 17 C 0.140 3.860 18 F -0.116 7.116 19 C -0.142 4.142 20 C 0.183 3.817 21 N -0.612 5.612 22 C -0.230 4.230 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.976 3.024 27 H -0.263 1.263 28 H -0.296 1.296 29 H -0.293 1.293 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.052 0.948 35 H 0.417 0.583 36 H 0.211 0.789 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.128 0.872 40 H 0.182 0.818 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.042 0.958 44 H -0.004 1.004 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.653 13.188 1.590 29.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C 0.053 3.947 4 H 0.069 0.931 5 C 0.048 3.952 6 H 0.099 0.901 7 N -0.331 5.331 8 C 0.356 3.644 9 O -0.444 6.444 10 C -0.152 4.152 11 N -0.111 5.111 12 C -0.144 4.144 13 C 0.098 3.902 14 O -0.217 6.217 15 C -0.088 4.088 16 C -0.185 4.185 17 C 0.117 3.883 18 F -0.094 7.094 19 C -0.182 4.182 20 C 0.058 3.942 21 N -0.337 5.337 22 C -0.359 4.359 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.599 5.599 26 Si 0.804 3.196 27 H -0.187 1.187 28 H -0.223 1.223 29 H -0.220 1.220 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.227 0.773 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.200 0.800 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.014 0.986 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -25.827 12.647 1.366 28.789 hybrid contribution 0.754 -0.349 -0.116 0.839 sum -25.072 12.298 1.250 27.954 Atomic orbital electron populations 1.21640 0.94101 1.01904 1.01455 1.21890 0.96217 0.97581 1.00764 1.21232 0.84537 0.94562 0.94365 0.93067 1.21760 0.83772 0.92022 0.97647 0.90099 1.45622 1.24934 1.50401 1.12159 1.17891 0.82243 0.80005 0.84306 1.90835 1.73940 1.54248 1.25370 1.20868 0.98674 1.05349 0.90286 1.67471 1.17511 1.06412 1.19660 1.23691 0.90908 0.98545 1.01238 1.20025 0.87636 0.89417 0.93155 1.86097 1.40117 1.61361 1.34117 1.23690 1.05145 1.01189 0.78821 1.20991 0.98160 1.00646 0.98718 1.18441 0.94534 0.94803 0.80540 1.91606 1.92942 1.85231 1.39613 1.23253 0.95543 0.98752 1.00627 1.21123 0.93692 0.92291 0.87117 1.44683 1.00407 1.68419 1.20169 1.19345 0.90334 1.34539 0.91670 0.89897 1.25726 0.98582 1.02050 0.99349 1.70150 1.10313 1.54547 1.24857 0.85048 0.78538 0.77107 0.78876 1.18670 1.22303 1.22027 0.93818 0.92043 0.91653 0.94454 0.92872 0.74484 0.77257 0.90247 0.90341 0.85432 0.80019 0.91411 0.90843 0.93912 0.98645 0.94390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.91 9.58 71.98 0.69 -3.22 16 2 C -0.12 -4.73 5.41 30.59 0.17 -4.57 16 3 C 0.16 6.46 2.94 45.34 0.13 6.59 16 4 H 0.05 1.95 7.71 -2.39 -0.02 1.93 16 5 C 0.15 5.79 2.02 46.18 0.09 5.89 16 6 H 0.08 3.35 7.18 -2.39 -0.02 3.34 16 7 N -0.68 -21.29 4.90 -439.85 -2.16 -23.44 16 8 C 0.57 18.73 7.80 86.76 0.68 19.41 16 9 O -0.57 -22.69 14.95 -3.93 -0.06 -22.75 16 10 C -0.01 -0.38 6.75 41.86 0.28 -0.10 16 11 N -0.40 -8.19 9.52 -184.39 -1.76 -9.95 16 12 C 0.02 0.26 10.21 85.04 0.87 1.13 16 13 C 0.15 1.90 6.72 22.73 0.15 2.05 16 14 O -0.31 -2.79 10.50 -90.45 -0.95 -3.74 16 15 C 0.00 0.01 9.82 113.37 1.11 1.12 16 16 C -0.16 -2.58 10.10 22.57 0.23 -2.35 16 17 C 0.14 3.35 7.31 22.74 0.17 3.52 16 18 F -0.12 -3.36 15.54 44.97 0.70 -2.66 16 19 C -0.14 -5.82 6.77 31.99 0.22 -5.61 16 20 C 0.18 9.38 5.41 86.85 0.47 9.85 16 21 N -0.61 -31.13 3.13 -668.26 -2.09 -33.22 16 22 C -0.23 -12.62 9.75 84.03 0.82 -11.81 16 23 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 24 C -0.06 -3.62 5.47 84.86 0.46 -3.15 16 25 N -0.95 -57.60 10.57 21.65 0.23 -57.37 16 26 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 27 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 29 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 30 H 0.04 1.33 7.40 -2.38 -0.02 1.31 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.04 1.55 8.07 -2.39 -0.02 1.53 16 34 H 0.05 2.12 7.90 -2.38 -0.02 2.10 16 35 H 0.42 11.37 7.68 -92.71 -0.71 10.65 16 36 H 0.21 0.99 6.31 -2.91 -0.02 0.97 16 37 H 0.08 -0.10 7.67 -2.38 -0.02 -0.12 16 38 H 0.08 -0.08 7.67 -2.39 -0.02 -0.10 16 39 H 0.13 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.07 2.84 8.14 -2.38 -0.02 2.82 16 43 H 0.04 2.42 6.93 -2.39 -0.02 2.41 16 44 H 0.00 -0.26 8.06 -2.38 -0.02 -0.27 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -74.12 373.53 2.79 -71.32 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.31 Total: 15.41 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.54 Total: 18.75 kcal Atomic # 7 Polarization: -118.21 SS G_CDS: -5.77 Total: -123.99 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.01 Total: -26.50 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.70 Total: -2.66 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.12 2.79 -71.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087596679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.609 kcal (2) G-P(sol) polarization free energy of solvation -74.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds