Wall clock time and date at job start Tue Mar 31 2020 19:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47024 * 2 1 4 4 H 1.08995 * 109.87468 * 55.82534 * 3 2 1 5 5 C 1.54324 * 109.88371 * 294.80500 * 3 2 1 6 6 H 1.09000 * 110.71878 * 336.60648 * 5 3 2 7 7 N 1.46504 * 110.71546 * 99.87108 * 5 3 2 8 8 C 1.34776 * 119.99705 * 199.97643 * 7 5 3 9 9 O 1.21280 * 120.00325 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99746 * 180.02562 * 8 7 5 11 11 C 1.50700 * 109.47076 * 179.97438 * 10 8 7 12 12 N 1.31773 * 122.75133 * 269.71046 * 11 10 8 13 13 C 1.29032 * 117.12832 * 179.75354 * 12 11 10 14 14 C 1.50695 * 124.92214 * 180.22840 * 13 12 11 15 15 S 1.70979 * 110.16218 * 0.48731 * 13 12 11 16 16 C 1.33643 * 122.74908 * 89.99511 * 11 10 8 17 17 C 1.50701 * 126.04102 * 0.02562 * 16 11 10 18 18 C 1.55157 * 102.94397 * 218.23492 * 5 3 2 19 19 C 1.54904 * 101.61469 * 35.48487 * 18 5 3 20 20 N 1.47022 * 110.01065 * 176.92248 * 3 2 1 21 21 C 1.36937 * 125.65181 * 298.48613 * 20 3 2 22 22 H 1.08004 * 119.99468 * 345.38905 * 21 20 3 23 23 C 1.38809 * 120.00135 * 165.38999 * 21 20 3 24 24 N 1.31616 * 120.00180 * 0.02562 * 23 21 20 25 25 Si 1.86808 * 119.99829 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46987 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47491 * 119.99914 * 25 23 21 28 28 H 1.48506 * 109.46722 * 239.99920 * 25 23 21 29 29 H 1.09001 * 109.47282 * 185.56739 * 1 2 3 30 30 H 1.09003 * 109.47093 * 305.56534 * 1 2 3 31 31 H 1.08999 * 109.47376 * 65.56758 * 1 2 3 32 32 H 1.09004 * 109.47077 * 240.00385 * 2 1 3 33 33 H 1.08998 * 109.47630 * 120.00222 * 2 1 3 34 34 H 0.96998 * 120.00290 * 19.98032 * 7 5 3 35 35 H 1.09002 * 109.47009 * 299.99337 * 10 8 7 36 36 H 1.08991 * 109.47235 * 59.99958 * 10 8 7 37 37 H 1.08994 * 109.47843 * 180.27652 * 14 13 12 38 38 H 1.09004 * 109.46710 * 300.27821 * 14 13 12 39 39 H 1.09003 * 109.47097 * 60.27313 * 14 13 12 40 40 H 1.08996 * 109.47344 * 89.99374 * 17 16 11 41 41 H 1.08992 * 109.47646 * 210.00021 * 17 16 11 42 42 H 1.09003 * 109.46526 * 329.99906 * 17 16 11 43 43 H 1.09000 * 110.99967 * 153.57804 * 18 5 3 44 44 H 1.08994 * 111.00162 * 277.38987 * 18 5 3 45 45 H 1.09004 * 110.36798 * 81.84686 * 19 18 5 46 46 H 1.08997 * 110.36721 * 204.16948 * 19 18 5 47 47 H 0.97000 * 120.00058 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6206 1.9838 0.8480 5 6 1.6409 2.1403 -1.3174 6 1 1.4684 1.4071 -2.1052 7 7 0.4567 2.9802 -1.1208 8 6 -0.2904 3.3501 -2.1798 9 8 0.0173 2.9872 -3.2954 10 6 -1.5082 4.2145 -1.9777 11 6 -2.1604 4.4829 -3.3095 12 7 -1.8489 5.5205 -4.0597 13 6 -2.4718 5.6426 -5.1830 14 6 -2.2510 6.7549 -6.1755 15 16 -3.5893 4.3635 -5.3793 16 6 -3.1060 3.6910 -3.8241 17 6 -3.6613 2.4435 -3.1866 18 6 2.8840 3.0109 -1.6399 19 6 4.0371 2.1053 -1.1402 20 7 3.5082 1.4571 0.0742 21 6 4.2606 0.9519 1.1008 22 1 3.7939 0.7115 2.0447 23 6 5.6228 0.7487 0.9283 24 7 6.1916 1.0422 -0.2218 25 14 6.6490 0.0589 2.3286 26 1 5.7784 -0.1853 3.5066 27 1 7.2744 -1.2185 1.9015 28 1 7.7100 1.0326 2.6911 29 1 -0.3634 -1.0228 0.0997 30 1 -0.3633 0.5977 0.8360 31 1 -0.3634 0.4251 -0.9356 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 0.2104 3.2702 -0.2286 35 1 -2.2137 3.7013 -1.3242 36 1 -1.2117 5.1591 -1.5220 37 1 -2.9114 6.6149 -7.0312 38 1 -2.4678 7.7125 -5.7021 39 1 -1.2139 6.7419 -6.5110 40 1 -4.5188 2.7034 -2.5659 41 1 -3.9735 1.7462 -3.9639 42 1 -2.8931 1.9785 -2.5686 43 1 2.9662 3.1926 -2.7115 44 1 2.8572 3.9501 -1.0874 45 1 4.2846 1.3563 -1.8925 46 1 4.9140 2.7061 -0.8991 47 1 7.1434 0.8999 -0.3425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087625198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:49 Heat of formation + Delta-G solvation = -4.349967 kcal Electronic energy + Delta-G solvation = -27346.775289 eV Core-core repulsion = 23655.574319 eV Total energy + Delta-G solvation = -3691.200970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47011 -40.51543 -39.12198 -35.60167 -34.79435 -34.26138 -33.50647 -31.54382 -31.08705 -30.29310 -28.02428 -26.48225 -25.89314 -24.13886 -23.46784 -22.28719 -21.55315 -21.12143 -19.75555 -18.92237 -18.75649 -18.07023 -17.38296 -16.73023 -16.15467 -16.00431 -15.89709 -15.60987 -15.43812 -15.08834 -14.56237 -14.41409 -14.28589 -14.23996 -14.12212 -13.87313 -13.58162 -13.54479 -13.25452 -13.13708 -13.01708 -12.89650 -12.79316 -12.70577 -12.55776 -12.20726 -12.05646 -12.01675 -11.96334 -11.86641 -11.57901 -11.35484 -10.92522 -10.68750 -10.56622 -10.11544 -9.96986 -9.49477 -8.83448 -7.85622 -5.23885 -0.23211 0.42384 0.75542 1.46927 1.47684 1.57907 1.65594 1.68990 2.32119 2.52967 3.18095 3.34768 3.56394 3.78615 3.85108 3.91131 4.03291 4.08336 4.13616 4.20392 4.38334 4.41720 4.45057 4.49303 4.61521 4.64405 4.66493 4.67044 4.71616 4.75658 4.88301 4.94392 4.96208 5.00702 5.11125 5.17783 5.22960 5.30972 5.33922 5.47346 5.50644 5.56622 5.68834 5.70322 6.22926 6.62616 6.83484 7.08324 7.32323 7.76414 8.43930 9.26047 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.002501 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.438033 B =11194.444424 C =11955.458518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.160 3.840 4 H 0.056 0.944 5 C 0.161 3.839 6 H 0.072 0.928 7 N -0.701 5.701 8 C 0.520 3.480 9 O -0.579 6.579 10 C -0.060 4.060 11 C 0.058 3.942 12 N -0.497 5.497 13 C 0.028 3.972 14 C -0.074 4.074 15 S 0.139 5.861 16 C -0.220 4.220 17 C -0.076 4.076 18 C -0.142 4.142 19 C 0.184 3.816 20 N -0.613 5.613 21 C -0.229 4.229 22 H 0.085 0.915 23 C -0.065 4.065 24 N -0.951 5.951 25 Si 0.975 3.025 26 H -0.261 1.261 27 H -0.296 1.296 28 H -0.294 1.294 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.416 0.584 35 H 0.146 0.854 36 H 0.123 0.877 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.102 0.898 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.071 0.929 45 H -0.009 1.009 46 H 0.039 0.961 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.734 8.199 -5.848 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.074 0.926 5 C 0.055 3.945 6 H 0.091 0.909 7 N -0.353 5.353 8 C 0.307 3.693 9 O -0.459 6.459 10 C -0.102 4.102 11 C -0.073 4.073 12 N -0.213 5.213 13 C -0.250 4.250 14 C -0.134 4.134 15 S 0.394 5.606 16 C -0.341 4.341 17 C -0.135 4.135 18 C -0.182 4.182 19 C 0.058 3.942 20 N -0.338 5.338 21 C -0.358 4.358 22 H 0.103 0.897 23 C -0.259 4.259 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.185 1.185 27 H -0.223 1.223 28 H -0.221 1.221 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.253 0.747 35 H 0.163 0.837 36 H 0.141 0.859 37 H 0.119 0.881 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.009 0.991 46 H 0.058 0.942 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.651 8.043 -7.243 27.841 hybrid contribution 1.940 -0.551 1.394 2.451 sum -23.711 7.491 -5.849 25.545 Atomic orbital electron populations 1.21653 0.93447 1.02038 1.01966 1.21902 0.96851 0.97461 1.00409 1.21264 0.84278 0.94637 0.94516 0.92619 1.21560 0.84068 0.91768 0.97132 0.90949 1.45796 1.26806 1.52068 1.10619 1.20884 0.84491 0.79951 0.84004 1.90705 1.72491 1.56932 1.25737 1.20253 0.94643 1.01771 0.93528 1.19596 0.97185 0.92022 0.98489 1.65984 1.26625 1.23134 1.05519 1.27416 0.98032 1.02361 0.97192 1.20545 1.04129 0.93647 0.95111 1.83592 1.38998 1.20198 1.17799 1.26012 1.04391 1.04576 0.99152 1.20360 1.01674 0.90775 1.00668 1.23212 0.96198 0.98795 0.99996 1.21100 0.93729 0.92206 0.87174 1.44706 1.00728 1.68256 1.20108 1.19359 0.90268 1.34437 0.91765 0.89737 1.25740 0.98665 1.02121 0.99327 1.70158 1.10222 1.54588 1.25002 0.85056 0.78569 0.77086 0.78911 1.18534 1.22338 1.22122 0.92282 0.91074 0.93088 0.94969 0.93198 0.74687 0.83672 0.85907 0.88067 0.88483 0.89846 0.87975 0.90467 0.90550 0.92387 0.90991 0.99075 0.94232 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 9.57 71.98 0.69 -2.67 16 2 C -0.13 -4.51 5.42 30.59 0.17 -4.34 16 3 C 0.16 6.10 2.93 45.34 0.13 6.23 16 4 H 0.06 1.94 7.69 -2.39 -0.02 1.92 16 5 C 0.16 5.70 1.93 46.18 0.09 5.79 16 6 H 0.07 2.89 7.35 -2.39 -0.02 2.87 16 7 N -0.70 -18.28 4.93 -436.91 -2.15 -20.43 16 8 C 0.52 14.43 7.82 87.66 0.69 15.12 16 9 O -0.58 -22.00 15.76 -3.03 -0.05 -22.05 16 10 C -0.06 -1.18 5.63 29.10 0.16 -1.02 16 11 C 0.06 1.42 5.23 41.52 0.22 1.64 16 12 N -0.50 -13.48 10.53 -179.40 -1.89 -15.36 16 13 C 0.03 0.60 7.39 88.52 0.65 1.26 16 14 C -0.07 -1.05 10.47 71.23 0.75 -0.30 16 15 S 0.14 2.56 23.17 -56.49 -1.31 1.25 16 16 C -0.22 -4.59 6.59 24.64 0.16 -4.43 16 17 C -0.08 -1.10 9.82 71.24 0.70 -0.40 16 18 C -0.14 -5.81 6.76 31.98 0.22 -5.60 16 19 C 0.18 9.41 5.41 86.84 0.47 9.88 16 20 N -0.61 -30.72 3.13 -668.16 -2.09 -32.81 16 21 C -0.23 -12.46 9.75 84.03 0.82 -11.64 16 22 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -3.70 5.47 84.86 0.46 -3.23 16 24 N -0.95 -57.80 10.57 21.65 0.23 -57.57 16 25 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 26 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 31 H 0.05 1.27 7.40 -2.39 -0.02 1.25 16 32 H 0.03 1.28 8.07 -2.38 -0.02 1.26 16 33 H 0.05 1.91 7.91 -2.39 -0.02 1.89 16 34 H 0.42 8.00 8.31 -92.71 -0.77 7.23 16 35 H 0.15 1.69 7.35 -2.39 -0.02 1.67 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.10 0.89 8.12 -2.39 -0.02 0.87 16 38 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.17 7.43 -2.39 -0.02 1.15 16 43 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 45 H -0.01 -0.50 8.06 -2.38 -0.02 -0.52 16 46 H 0.04 2.26 6.93 -2.39 -0.02 2.25 16 47 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -77.09 393.20 1.34 -75.75 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.20 Total: 17.43 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.38 Total: 6.29 kcal Atomic # 7 Polarization: -120.27 SS G_CDS: -5.91 Total: -126.18 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.05 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 2.56 SS G_CDS: -1.31 Total: 1.25 kcal Total: -77.09 1.34 -75.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087625198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.402 kcal (2) G-P(sol) polarization free energy of solvation -77.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds