Wall clock time and date at job start Tue Mar 31 2020 19:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 H 1.08993 * 109.99899 * 304.65549 * 3 2 1 5 5 C 1.54334 * 109.98953 * 183.61637 * 3 2 1 6 6 H 1.09001 * 110.51778 * 336.97705 * 5 3 2 7 7 N 1.46503 * 111.00036 * 100.12871 * 5 3 2 8 8 C 1.34774 * 119.99703 * 200.23274 * 7 5 3 9 9 O 1.21282 * 120.00361 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47412 * 180.02562 * 10 8 7 12 12 S 1.76199 * 126.03312 * 269.69208 * 11 10 8 13 13 C 1.70977 * 90.28027 * 179.97438 * 12 11 10 14 14 C 1.50698 * 124.91311 * 180.02562 * 13 12 11 15 15 N 1.29027 * 110.16858 * 0.34672 * 13 12 11 16 16 C 1.31781 * 117.12254 * 359.72090 * 15 13 12 17 17 C 1.50699 * 122.74851 * 179.97438 * 16 15 13 18 18 C 1.55155 * 103.01917 * 218.66574 * 5 3 2 19 19 C 1.54911 * 101.58327 * 35.30818 * 18 5 3 20 20 N 1.47028 * 109.88151 * 65.75279 * 3 2 1 21 21 C 1.36939 * 125.64437 * 298.38701 * 20 3 2 22 22 H 1.07996 * 120.00487 * 333.65804 * 21 20 3 23 23 C 1.38815 * 119.99752 * 153.65281 * 21 20 3 24 24 N 1.31620 * 119.99847 * 334.80900 * 23 21 20 25 25 Si 1.86799 * 120.00161 * 154.80617 * 23 21 20 26 26 H 1.48501 * 109.46767 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47334 * 240.00113 * 25 23 21 28 28 H 1.48500 * 109.46869 * 119.99752 * 25 23 21 29 29 H 1.08998 * 109.47682 * 171.76174 * 1 2 3 30 30 H 1.09005 * 109.47168 * 291.76371 * 1 2 3 31 31 H 1.09001 * 109.47315 * 51.75730 * 1 2 3 32 32 H 1.08993 * 109.46977 * 239.99754 * 2 1 3 33 33 H 1.08997 * 109.46836 * 119.99849 * 2 1 3 34 34 H 0.96996 * 120.00194 * 20.23673 * 7 5 3 35 35 H 1.09002 * 109.47252 * 300.00089 * 10 8 7 36 36 H 1.09000 * 109.47443 * 60.00011 * 10 8 7 37 37 H 1.08995 * 109.47710 * 270.28882 * 14 13 12 38 38 H 1.09001 * 109.47412 * 30.29392 * 14 13 12 39 39 H 1.09001 * 109.47068 * 150.28590 * 14 13 12 40 40 H 1.08999 * 109.47555 * 270.00828 * 17 16 15 41 41 H 1.09006 * 109.46742 * 30.00791 * 17 16 15 42 42 H 1.08997 * 109.47187 * 150.00186 * 17 16 15 43 43 H 1.09000 * 111.00669 * 277.23468 * 18 5 3 44 44 H 1.09001 * 111.03886 * 153.39461 * 18 5 3 45 45 H 1.09008 * 110.36558 * 204.14906 * 19 18 5 46 46 H 1.09003 * 110.46006 * 81.87797 * 19 18 5 47 47 H 0.97006 * 120.00024 * 353.73906 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9881 -0.8425 5 6 3.5805 1.4574 -0.0915 6 1 3.9935 0.5134 0.2641 7 7 4.0225 1.7313 -1.4611 8 6 5.2691 1.3942 -1.8470 9 8 6.0251 0.8646 -1.0603 10 6 5.7236 1.6754 -3.2560 11 6 7.1450 1.2052 -3.4287 12 16 8.5956 2.1647 -3.1466 13 6 9.5726 0.8321 -3.5858 14 6 11.0794 0.8374 -3.6075 15 7 8.8330 -0.1766 -3.9025 16 6 7.5277 -0.0109 -3.8293 17 6 6.5469 -1.1031 -4.1702 18 6 3.9757 2.6209 0.8558 19 6 2.9044 2.4944 1.9676 20 7 1.6713 2.1032 1.2607 21 6 0.3941 2.3149 1.7069 22 1 -0.4187 2.3945 1.0002 23 6 0.1440 2.4270 3.0677 24 7 0.9589 1.8648 3.9351 25 14 -1.3489 3.3758 3.6680 26 1 -2.0996 3.9067 2.5019 27 1 -0.9063 4.5032 4.5273 28 1 -2.2279 2.4713 4.4518 29 1 -0.3634 -1.0170 -0.1472 30 1 -0.3634 0.3811 0.9545 31 1 -0.3634 0.6361 -0.8071 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4181 2.1552 -2.0902 35 1 5.0787 1.1469 -3.9581 36 1 5.6691 2.7468 -3.4484 37 1 11.4277 1.1552 -4.5902 38 1 11.4514 1.5270 -2.8497 39 1 11.4493 -0.1663 -3.3981 40 1 6.2960 -1.0487 -5.2295 41 1 6.9933 -2.0733 -3.9519 42 1 5.6421 -0.9775 -3.5755 43 1 3.8993 3.5820 0.3473 44 1 4.9773 2.4737 1.2599 45 1 2.7656 3.4511 2.4714 46 1 3.1898 1.7260 2.6861 47 1 1.6814 1.2971 3.6243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087663237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:47 Heat of formation + Delta-G solvation = 14.685863 kcal Electronic energy + Delta-G solvation = -27192.406373 eV Core-core repulsion = 23502.030859 eV Total energy + Delta-G solvation = -3690.375515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.35983 -39.56903 -37.91241 -34.27567 -34.00016 -32.60788 -32.04885 -30.89701 -29.37339 -28.61213 -27.04845 -25.66307 -24.25102 -22.92634 -21.91145 -21.00521 -20.29117 -19.62012 -18.86704 -18.12794 -17.41771 -17.06353 -16.18828 -15.36334 -15.26070 -14.95248 -14.45701 -14.27215 -13.77997 -13.70166 -13.61601 -13.49589 -13.37782 -13.15420 -12.92743 -12.80455 -12.53449 -12.43182 -12.28724 -12.18905 -11.99573 -11.65466 -11.27152 -11.10939 -10.93102 -10.76336 -10.50251 -10.27259 -10.13563 -10.09413 -9.89777 -9.84951 -9.78122 -9.45464 -9.34425 -8.78242 -8.69968 -8.41094 -6.92894 -6.07283 -3.24492 0.51718 1.17499 1.58152 2.59035 2.65959 3.28977 3.48698 3.51653 3.64084 3.87839 4.43529 4.54674 4.71995 4.77800 4.83855 5.07507 5.11832 5.13014 5.17786 5.22569 5.31675 5.33460 5.40868 5.40981 5.51148 5.63264 5.68047 5.77084 5.90508 5.94711 6.04397 6.12354 6.13297 6.26608 6.37216 6.47734 6.54689 6.64503 6.76205 6.92386 7.02844 7.08532 7.30997 7.58760 7.60689 7.85579 8.29043 8.47561 8.99759 9.77137 10.35721 11.20404 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.002451 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.235140 B =11423.448042 C =12017.234931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.091 0.909 7 N -0.715 5.715 8 C 0.511 3.489 9 O -0.529 6.529 10 C -0.064 4.064 11 C -0.204 4.204 12 S 0.129 5.871 13 C 0.043 3.957 14 C -0.076 4.076 15 N -0.471 5.471 16 C 0.077 3.923 17 C -0.078 4.078 18 C -0.143 4.143 19 C 0.143 3.857 20 N -0.590 5.590 21 C -0.325 4.325 22 H 0.064 0.936 23 C -0.024 4.024 24 N -0.914 5.914 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.294 1.294 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.399 0.601 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.029 0.971 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.737 0.196 -18.550 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.109 0.891 7 N -0.366 5.366 8 C 0.296 3.704 9 O -0.405 6.405 10 C -0.106 4.106 11 C -0.325 4.325 12 S 0.385 5.615 13 C -0.235 4.235 14 C -0.136 4.136 15 N -0.187 5.187 16 C -0.055 4.055 17 C -0.138 4.138 18 C -0.183 4.183 19 C 0.018 3.982 20 N -0.316 5.316 21 C -0.454 4.454 22 H 0.081 0.919 23 C -0.227 4.227 24 N -0.553 5.553 25 Si 0.899 3.101 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.221 1.221 29 H 0.048 0.952 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.233 0.767 35 H 0.132 0.868 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.047 0.953 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.899 0.941 -16.419 21.533 hybrid contribution -0.116 -1.079 -1.803 2.105 sum 13.783 -0.138 -18.223 22.849 Atomic orbital electron populations 1.21890 0.95629 0.98859 1.04216 1.21876 0.97079 0.97587 0.99631 1.21191 0.89603 0.92313 0.91940 0.94574 1.22085 0.95537 0.99035 0.80205 0.89078 1.46029 1.14067 1.62340 1.14185 1.20356 0.82041 0.78813 0.89214 1.90734 1.53386 1.42076 1.54327 1.20057 0.90875 1.03643 0.96074 1.24911 0.98444 0.97746 1.11422 1.83856 0.97389 1.17092 1.63132 1.26882 1.01617 0.92494 1.02477 1.20425 0.85240 1.04554 1.03406 1.66117 1.04384 1.29984 1.18171 1.20063 0.90214 0.94345 1.00860 1.20356 0.96027 0.95774 1.01630 1.23175 0.99352 0.97736 0.98034 1.21542 0.85313 0.98611 0.92767 1.44521 1.01907 1.65364 1.19769 1.19641 0.83768 1.49298 0.92644 0.91862 1.25842 1.03965 1.00540 0.92382 1.70701 1.19067 1.29087 1.36475 0.83477 0.75066 0.76396 0.75193 1.21794 1.21707 1.22141 0.95211 0.88965 0.94297 0.94335 0.92615 0.76716 0.86830 0.87670 0.89698 0.90110 0.89307 0.90687 0.90486 0.90818 0.91674 0.91657 0.93164 0.95281 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 8.98 37.16 0.33 -2.52 16 2 C -0.12 -2.31 5.47 -26.73 -0.15 -2.46 16 3 C 0.16 3.03 3.00 -66.94 -0.20 2.83 16 4 H 0.04 0.68 7.70 -51.93 -0.40 0.28 16 5 C 0.14 2.36 2.76 -66.09 -0.18 2.18 16 6 H 0.09 1.76 7.39 -51.93 -0.38 1.37 16 7 N -0.72 -9.60 5.21 -52.03 -0.27 -9.87 16 8 C 0.51 7.03 7.82 -10.99 -0.09 6.95 16 9 O -0.53 -9.60 15.76 5.56 0.09 -9.52 16 10 C -0.06 -0.63 5.63 -29.03 -0.16 -0.79 16 11 C -0.20 -2.42 5.08 -35.92 -0.18 -2.60 16 12 S 0.13 1.40 23.18 -107.50 -2.49 -1.09 16 13 C 0.04 0.48 7.39 -13.46 -0.10 0.38 16 14 C -0.08 -0.54 10.46 36.00 0.38 -0.17 16 15 N -0.47 -6.22 10.53 -8.06 -0.08 -6.30 16 16 C 0.08 0.97 6.74 -84.23 -0.57 0.41 16 17 C -0.08 -0.80 9.81 36.00 0.35 -0.45 16 18 C -0.14 -2.66 6.77 -24.58 -0.17 -2.82 16 19 C 0.14 3.26 5.57 -2.53 -0.01 3.24 16 20 N -0.59 -13.90 2.92 -162.56 -0.47 -14.38 16 21 C -0.33 -8.50 7.22 -15.06 -0.11 -8.60 16 22 H 0.06 1.66 7.25 -52.49 -0.38 1.28 16 23 C -0.02 -0.66 5.17 -17.43 -0.09 -0.76 16 24 N -0.91 -26.81 13.05 55.49 0.72 -26.09 16 25 Si 1.07 24.72 29.99 -169.99 -5.10 19.62 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 2.10 5.53 -51.93 -0.29 1.81 16 31 H 0.04 0.70 8.13 -51.93 -0.42 0.27 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.40 4.24 8.33 -40.82 -0.34 3.90 16 35 H 0.11 0.82 7.43 -51.93 -0.39 0.44 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.74 7.35 -51.93 -0.38 0.36 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 46 H 0.03 0.72 6.72 -51.93 -0.35 0.37 16 47 H 0.27 8.02 6.20 -40.82 -0.25 7.77 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -33.13 389.57 -10.13 -43.26 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.45 Total: 3.69 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -0.94 Total: -5.19 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.11 Total: -56.64 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -5.10 Total: 19.62 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.49 Total: -1.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.13 -10.13 -43.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087663237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.950 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds