Wall clock time and date at job start Tue Mar 31 2020 19:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47094 * 2 1 4 4 H 1.08993 * 109.99899 * 304.65549 * 3 2 1 5 5 C 1.54334 * 109.98953 * 183.61637 * 3 2 1 6 6 H 1.09001 * 110.51778 * 336.97705 * 5 3 2 7 7 N 1.46503 * 111.00036 * 100.12871 * 5 3 2 8 8 C 1.34774 * 119.99703 * 200.23274 * 7 5 3 9 9 O 1.21282 * 120.00361 * 359.97438 * 8 7 5 10 10 C 1.50696 * 120.00002 * 179.97438 * 8 7 5 11 11 C 1.50704 * 109.47412 * 180.02562 * 10 8 7 12 12 S 1.76199 * 126.03312 * 269.69208 * 11 10 8 13 13 C 1.70977 * 90.28027 * 179.97438 * 12 11 10 14 14 C 1.50698 * 124.91311 * 180.02562 * 13 12 11 15 15 N 1.29027 * 110.16858 * 0.34672 * 13 12 11 16 16 C 1.31781 * 117.12254 * 359.72090 * 15 13 12 17 17 C 1.50699 * 122.74851 * 179.97438 * 16 15 13 18 18 C 1.55155 * 103.01917 * 218.66574 * 5 3 2 19 19 C 1.54911 * 101.58327 * 35.30818 * 18 5 3 20 20 N 1.47028 * 109.88151 * 65.75279 * 3 2 1 21 21 C 1.36939 * 125.64437 * 298.38701 * 20 3 2 22 22 H 1.07996 * 120.00487 * 333.65804 * 21 20 3 23 23 C 1.38815 * 119.99752 * 153.65281 * 21 20 3 24 24 N 1.31620 * 119.99847 * 334.80900 * 23 21 20 25 25 Si 1.86799 * 120.00161 * 154.80617 * 23 21 20 26 26 H 1.48501 * 109.46767 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47334 * 240.00113 * 25 23 21 28 28 H 1.48500 * 109.46869 * 119.99752 * 25 23 21 29 29 H 1.08998 * 109.47682 * 171.76174 * 1 2 3 30 30 H 1.09005 * 109.47168 * 291.76371 * 1 2 3 31 31 H 1.09001 * 109.47315 * 51.75730 * 1 2 3 32 32 H 1.08993 * 109.46977 * 239.99754 * 2 1 3 33 33 H 1.08997 * 109.46836 * 119.99849 * 2 1 3 34 34 H 0.96996 * 120.00194 * 20.23673 * 7 5 3 35 35 H 1.09002 * 109.47252 * 300.00089 * 10 8 7 36 36 H 1.09000 * 109.47443 * 60.00011 * 10 8 7 37 37 H 1.08995 * 109.47710 * 270.28882 * 14 13 12 38 38 H 1.09001 * 109.47412 * 30.29392 * 14 13 12 39 39 H 1.09001 * 109.47068 * 150.28590 * 14 13 12 40 40 H 1.08999 * 109.47555 * 270.00828 * 17 16 15 41 41 H 1.09006 * 109.46742 * 30.00791 * 17 16 15 42 42 H 1.08997 * 109.47187 * 150.00186 * 17 16 15 43 43 H 1.09000 * 111.00669 * 277.23468 * 18 5 3 44 44 H 1.09001 * 111.03886 * 153.39461 * 18 5 3 45 45 H 1.09008 * 110.36558 * 204.14906 * 19 18 5 46 46 H 1.09003 * 110.46006 * 81.87797 * 19 18 5 47 47 H 0.97006 * 120.00024 * 353.73906 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6151 1.9881 -0.8425 5 6 3.5805 1.4574 -0.0915 6 1 3.9935 0.5134 0.2641 7 7 4.0225 1.7313 -1.4611 8 6 5.2691 1.3942 -1.8470 9 8 6.0251 0.8646 -1.0603 10 6 5.7236 1.6754 -3.2560 11 6 7.1450 1.2052 -3.4287 12 16 8.5956 2.1647 -3.1466 13 6 9.5726 0.8321 -3.5858 14 6 11.0794 0.8374 -3.6075 15 7 8.8330 -0.1766 -3.9025 16 6 7.5277 -0.0109 -3.8293 17 6 6.5469 -1.1031 -4.1702 18 6 3.9757 2.6209 0.8558 19 6 2.9044 2.4944 1.9676 20 7 1.6713 2.1032 1.2607 21 6 0.3941 2.3149 1.7069 22 1 -0.4187 2.3945 1.0002 23 6 0.1440 2.4270 3.0677 24 7 0.9589 1.8648 3.9351 25 14 -1.3489 3.3758 3.6680 26 1 -2.0996 3.9067 2.5019 27 1 -0.9063 4.5032 4.5273 28 1 -2.2279 2.4713 4.4518 29 1 -0.3634 -1.0170 -0.1472 30 1 -0.3634 0.3811 0.9545 31 1 -0.3634 0.6361 -0.8071 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4181 2.1552 -2.0902 35 1 5.0787 1.1469 -3.9581 36 1 5.6691 2.7468 -3.4484 37 1 11.4277 1.1552 -4.5902 38 1 11.4514 1.5270 -2.8497 39 1 11.4493 -0.1663 -3.3981 40 1 6.2960 -1.0487 -5.2295 41 1 6.9933 -2.0733 -3.9519 42 1 5.6421 -0.9775 -3.5755 43 1 3.8993 3.5820 0.3473 44 1 4.9773 2.4737 1.2599 45 1 2.7656 3.4511 2.4714 46 1 3.1898 1.7260 2.6861 47 1 1.6814 1.2971 3.6243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087663237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:46 Heat of formation + Delta-G solvation = -6.675293 kcal Electronic energy + Delta-G solvation = -27193.332663 eV Core-core repulsion = 23502.030859 eV Total energy + Delta-G solvation = -3691.301804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36709 -40.69180 -39.42340 -35.77633 -34.83927 -34.28671 -33.65915 -31.81208 -30.38278 -30.04821 -28.55837 -26.83278 -25.91426 -23.71542 -23.54216 -22.39322 -21.68621 -21.20297 -19.79615 -19.30114 -18.93824 -18.19735 -17.56174 -16.44263 -16.27132 -16.08174 -15.86973 -15.68297 -15.46717 -15.13109 -14.72359 -14.61347 -14.48875 -14.15966 -14.10419 -14.02414 -13.84562 -13.50551 -13.34743 -13.23182 -12.91226 -12.83587 -12.83292 -12.66355 -12.53954 -12.17534 -12.06522 -11.86544 -11.82919 -11.73913 -11.57259 -11.38517 -11.05714 -10.63672 -10.45015 -10.20739 -10.07649 -9.51092 -8.92591 -8.17845 -5.32745 -0.31285 0.38868 0.75743 1.59479 1.60180 1.67482 1.71693 1.82230 2.17489 2.68247 3.15685 3.26539 3.44610 3.61152 3.74344 3.76070 3.95662 4.02368 4.07323 4.11193 4.26661 4.39007 4.46497 4.48563 4.51527 4.52976 4.56735 4.63843 4.67793 4.71840 4.80346 4.87787 4.93778 4.95119 5.00643 5.05535 5.07967 5.15733 5.22647 5.33985 5.35010 5.57047 5.65411 5.85299 6.39023 6.54449 6.77102 6.96005 7.24089 7.74877 8.36496 9.08213 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.002451 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.235140 B =11423.448042 C =12017.234931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C 0.156 3.844 4 H 0.058 0.942 5 C 0.153 3.847 6 H 0.070 0.930 7 N -0.702 5.702 8 C 0.514 3.486 9 O -0.576 6.576 10 C -0.055 4.055 11 C -0.221 4.221 12 S 0.135 5.865 13 C 0.037 3.963 14 C -0.077 4.077 15 N -0.504 5.504 16 C 0.058 3.942 17 C -0.077 4.077 18 C -0.127 4.127 19 C 0.148 3.852 20 N -0.606 5.606 21 C -0.309 4.309 22 H 0.066 0.934 23 C -0.083 4.083 24 N -0.951 5.951 25 Si 1.114 2.886 26 H -0.267 1.267 27 H -0.294 1.294 28 H -0.296 1.296 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.417 0.583 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.024 0.976 46 H -0.001 1.001 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.592 1.128 -21.772 25.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.075 0.925 5 C 0.047 3.953 6 H 0.089 0.911 7 N -0.354 5.354 8 C 0.301 3.699 9 O -0.455 6.455 10 C -0.097 4.097 11 C -0.342 4.342 12 S 0.392 5.608 13 C -0.240 4.240 14 C -0.137 4.137 15 N -0.220 5.220 16 C -0.074 4.074 17 C -0.136 4.136 18 C -0.167 4.167 19 C 0.022 3.978 20 N -0.332 5.332 21 C -0.438 4.438 22 H 0.084 0.916 23 C -0.279 4.279 24 N -0.594 5.594 25 Si 0.940 3.060 26 H -0.192 1.192 27 H -0.221 1.221 28 H -0.223 1.223 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.255 0.745 35 H 0.164 0.836 36 H 0.152 0.848 37 H 0.123 0.877 38 H 0.115 0.885 39 H 0.107 0.893 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.016 0.984 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 13.739 1.890 -19.716 24.105 hybrid contribution 0.013 -1.420 -0.880 1.670 sum 13.752 0.470 -20.595 24.769 Atomic orbital electron populations 1.21769 0.95583 1.00243 1.02381 1.21819 0.97018 0.97213 0.99722 1.21336 0.91022 0.92407 0.90312 0.92477 1.21600 0.93961 0.97499 0.82227 0.91145 1.45786 1.14609 1.62358 1.12663 1.21035 0.81189 0.77331 0.90390 1.90731 1.54620 1.44108 1.56046 1.20137 0.90157 1.05870 0.93488 1.25181 0.99547 0.97850 1.11650 1.83755 0.97288 1.16931 1.62871 1.27548 1.03161 0.92137 1.01151 1.20608 0.82894 1.05104 1.05128 1.66171 1.05029 1.31071 1.19712 1.20478 0.90536 0.95247 1.01106 1.20402 0.95454 0.94700 1.03040 1.23014 0.97692 0.99154 0.96816 1.21365 0.86670 0.96178 0.93602 1.44743 1.01443 1.66215 1.20836 1.19839 0.84815 1.46695 0.92492 0.91603 1.27075 1.05963 1.01591 0.93302 1.70825 1.20266 1.31328 1.36965 0.82861 0.72589 0.75071 0.75475 1.19188 1.22087 1.22346 0.93214 0.93034 0.92726 0.91019 0.95636 0.74497 0.83603 0.84765 0.87691 0.88524 0.89328 0.88475 0.91389 0.90692 0.89989 0.91586 0.95755 0.98359 0.93608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 8.98 71.98 0.65 -4.59 16 2 C -0.12 -4.32 5.47 30.59 0.17 -4.15 16 3 C 0.16 5.76 3.00 45.34 0.14 5.90 16 4 H 0.06 1.94 7.70 -2.39 -0.02 1.92 16 5 C 0.15 5.11 2.76 46.18 0.13 5.24 16 6 H 0.07 2.70 7.39 -2.39 -0.02 2.68 16 7 N -0.70 -16.64 5.21 -436.90 -2.28 -18.92 16 8 C 0.51 12.79 7.82 87.66 0.69 13.47 16 9 O -0.58 -20.27 15.76 -3.03 -0.05 -20.32 16 10 C -0.05 -0.88 5.63 29.10 0.16 -0.72 16 11 C -0.22 -4.77 5.08 24.64 0.13 -4.65 16 12 S 0.14 2.70 23.18 -56.49 -1.31 1.39 16 13 C 0.04 0.78 7.39 88.52 0.65 1.44 16 14 C -0.08 -0.98 10.46 71.24 0.75 -0.23 16 15 N -0.50 -12.85 10.53 -179.41 -1.89 -14.74 16 16 C 0.06 1.38 6.74 41.52 0.28 1.66 16 17 C -0.08 -1.44 9.81 71.24 0.70 -0.74 16 18 C -0.13 -4.65 6.77 31.99 0.22 -4.43 16 19 C 0.15 6.95 5.57 86.86 0.48 7.43 16 20 N -0.61 -28.77 2.92 -668.23 -1.95 -30.72 16 21 C -0.31 -16.23 7.22 84.03 0.61 -15.62 16 22 H 0.07 3.39 7.25 -2.91 -0.02 3.37 16 23 C -0.08 -4.64 5.17 84.86 0.44 -4.20 16 24 N -0.95 -58.22 13.05 21.65 0.28 -57.93 16 25 Si 1.11 50.43 29.99 68.60 2.06 52.49 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 28 H -0.30 -13.38 7.11 99.48 0.71 -12.68 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.05 2.33 5.53 -2.38 -0.01 2.31 16 31 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.42 7.00 8.33 -92.71 -0.77 6.22 16 35 H 0.15 1.42 7.43 -2.39 -0.02 1.41 16 36 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 1.35 7.35 -2.39 -0.02 1.33 16 43 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 46 H 0.00 -0.07 6.72 -2.39 -0.02 -0.09 16 47 H 0.25 15.93 6.20 -92.70 -0.57 15.36 16 Total: -1.00 -75.55 389.57 1.44 -74.11 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: 0.40 Total: 18.83 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: 6.18 Total: -4.19 kcal Atomic # 7 Polarization: -116.47 SS G_CDS: -5.83 Total: -122.31 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.05 Total: -20.32 kcal Atomic # 14 Polarization: 50.43 SS G_CDS: 2.06 Total: 52.49 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -75.55 1.44 -74.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087663237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.431 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds