Wall clock time and date at job start Tue Mar 31 2020 19:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 H 1.08996 * 109.87708 * 55.79693 * 3 2 1 5 5 C 1.54331 * 109.87872 * 294.78330 * 3 2 1 6 6 H 1.08997 * 110.72068 * 336.93288 * 5 3 2 7 7 N 1.46503 * 110.71749 * 100.02792 * 5 3 2 8 8 C 1.34772 * 119.99609 * 204.99845 * 7 5 3 9 9 O 1.21630 * 120.00196 * 0.02562 * 8 7 5 10 10 C 1.47273 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.35202 * 123.14403 * 179.97438 * 10 8 7 12 12 S 1.70945 * 108.82707 * 180.02562 * 11 10 8 13 13 C 1.70775 * 91.12785 * 359.97438 * 12 11 10 14 14 C 1.50701 * 124.72036 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46460 * 299.95961 * 14 13 12 16 16 C 1.52999 * 109.47115 * 59.95741 * 14 13 12 17 17 N 1.28648 * 110.55786 * 0.02562 * 13 12 11 18 18 C 1.55154 * 102.94141 * 218.38848 * 5 3 2 19 19 C 1.54912 * 101.58021 * 35.50267 * 18 5 3 20 20 N 1.47015 * 109.88186 * 176.97924 * 3 2 1 21 21 C 1.36937 * 125.64893 * 298.38776 * 20 3 2 22 22 H 1.08004 * 119.99859 * 345.37974 * 21 20 3 23 23 C 1.38811 * 120.00424 * 165.37876 * 21 20 3 24 24 N 1.31622 * 119.99825 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00118 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47402 * 60.00159 * 25 23 21 27 27 H 1.48502 * 109.46940 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47334 * 300.00011 * 25 23 21 29 29 H 1.09001 * 109.47487 * 305.58447 * 1 2 3 30 30 H 1.09002 * 109.47130 * 65.58852 * 1 2 3 31 31 H 1.09004 * 109.47153 * 185.58311 * 1 2 3 32 32 H 1.08997 * 109.47355 * 239.99775 * 2 1 3 33 33 H 1.09003 * 109.46947 * 119.99388 * 2 1 3 34 34 H 0.96997 * 120.00248 * 25.00084 * 7 5 3 35 35 H 1.07997 * 125.58430 * 0.05107 * 11 10 8 36 36 H 1.08990 * 109.47169 * 179.97438 * 14 13 12 37 37 H 1.09010 * 109.46870 * 179.97438 * 15 14 13 38 38 H 1.08998 * 109.47757 * 299.99416 * 15 14 13 39 39 H 1.08996 * 109.47489 * 60.00609 * 15 14 13 40 40 H 1.08995 * 109.47446 * 60.00249 * 16 14 13 41 41 H 1.08998 * 109.46909 * 180.02562 * 16 14 13 42 42 H 1.09005 * 109.47066 * 300.00109 * 16 14 13 43 43 H 1.08997 * 111.00395 * 153.57190 * 18 5 3 44 44 H 1.08998 * 111.00669 * 277.42878 * 18 5 3 45 45 H 1.08999 * 110.36659 * 204.14911 * 19 18 5 46 46 H 1.09005 * 110.36766 * 81.82856 * 19 18 5 47 47 H 0.96998 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9840 0.8477 5 6 1.6413 2.1401 -1.3177 6 1 1.4635 1.4064 -2.1039 7 7 0.4592 2.9829 -1.1209 8 6 -0.3448 3.2699 -2.1637 9 8 -0.0893 2.8289 -3.2681 10 6 -1.5328 4.1176 -1.9661 11 6 -2.3814 4.4457 -2.9662 12 16 -3.6229 5.4360 -2.3337 13 6 -2.9382 5.3544 -0.7713 14 6 -3.5040 6.0318 0.4502 15 6 -3.5499 7.5437 0.2195 16 6 -4.9192 5.5126 0.7119 17 7 -1.8724 4.6341 -0.7822 18 6 2.8861 3.0075 -1.6421 19 6 4.0371 2.0989 -1.1427 20 7 3.5083 1.4537 0.0729 21 6 4.2603 0.9481 1.0995 22 1 3.7940 0.7101 2.0441 23 6 5.6219 0.7413 0.9261 24 7 6.1903 1.0317 -0.2250 25 14 6.6475 0.0508 2.3263 26 1 6.1274 -1.2866 2.7082 27 1 8.0615 -0.0736 1.8897 28 1 6.5693 0.9643 3.4945 29 1 -0.3634 0.5980 0.8357 30 1 -0.3633 0.4247 -0.9358 31 1 -0.3634 -1.0228 0.1000 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.2553 3.3343 -0.2401 35 1 -2.2901 4.1330 -3.9959 36 1 -2.8721 5.8149 1.3114 37 1 -3.9595 8.0337 1.1029 38 1 -2.5417 7.9137 0.0331 39 1 -4.1817 7.7608 -0.6417 40 1 -4.8865 4.4356 0.8762 41 1 -5.3285 6.0029 1.5952 42 1 -5.5510 5.7298 -0.1494 43 1 2.9679 3.1880 -2.7139 44 1 2.8624 3.9470 -1.0899 45 1 4.9160 2.6972 -0.9029 46 1 4.2816 1.3485 -1.8946 47 1 7.1419 0.8876 -0.3460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087764534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:40 Heat of formation + Delta-G solvation = 14.940411 kcal Electronic energy + Delta-G solvation = -27288.363712 eV Core-core repulsion = 23597.999235 eV Total energy + Delta-G solvation = -3690.364477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.60321 -39.08200 -37.56745 -35.82961 -33.98878 -32.70622 -31.66804 -30.28386 -29.00183 -27.64113 -26.91710 -25.72796 -24.41580 -23.20911 -21.92376 -20.91704 -20.26726 -20.04521 -19.38042 -18.35654 -16.84898 -16.49806 -16.07227 -15.65350 -15.39598 -14.76536 -14.65301 -14.28250 -14.11116 -13.92970 -13.72252 -13.51782 -13.20839 -13.16178 -12.66747 -12.63647 -12.24845 -12.09020 -11.97375 -11.88800 -11.66659 -11.60706 -11.38267 -11.11491 -10.86869 -10.80939 -10.57742 -10.42462 -10.30395 -10.08876 -10.07166 -9.87731 -9.83206 -9.66915 -9.61997 -9.12600 -8.59758 -8.50996 -6.77871 -5.72727 -3.08985 0.32775 0.98534 1.39474 1.88481 3.34938 3.41470 3.42988 3.45963 3.46833 3.70491 4.39476 4.50354 4.59446 4.63399 4.95567 5.04954 5.12099 5.13847 5.31454 5.34179 5.38408 5.39909 5.53727 5.55351 5.58575 5.72474 5.76313 5.76854 5.80657 5.84453 5.91015 6.11155 6.28378 6.34380 6.46521 6.50584 6.59948 6.71296 6.77803 6.98632 7.14528 7.26327 7.53823 7.63437 7.79975 7.82014 8.28677 8.39087 9.20704 9.81645 10.49962 11.39259 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002656 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.350835 B =10541.536980 C =10964.758420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.036 0.964 5 C 0.136 3.864 6 H 0.096 0.904 7 N -0.693 5.693 8 C 0.590 3.410 9 O -0.539 6.539 10 C 0.017 3.983 11 C -0.229 4.229 12 S 0.200 5.800 13 C 0.034 3.966 14 C -0.021 4.021 15 C -0.148 4.148 16 C -0.148 4.148 17 N -0.441 5.441 18 C -0.157 4.157 19 C 0.175 3.825 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.075 0.925 23 C -0.003 4.003 24 N -0.917 5.917 25 Si 0.911 3.089 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.285 1.285 29 H 0.047 0.953 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.407 0.593 35 H 0.189 0.811 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.028 0.972 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.822 11.785 -1.616 26.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.031 3.969 6 H 0.114 0.886 7 N -0.342 5.342 8 C 0.373 3.627 9 O -0.416 6.416 10 C -0.118 4.118 11 C -0.371 4.371 12 S 0.457 5.543 13 C -0.246 4.246 14 C -0.043 4.043 15 C -0.207 4.207 16 C -0.206 4.206 17 N -0.155 5.155 18 C -0.196 4.196 19 C 0.050 3.950 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.092 0.908 23 C -0.200 4.200 24 N -0.563 5.563 25 Si 0.741 3.259 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.211 1.211 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.242 0.758 35 H 0.206 0.794 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.092 0.908 46 H 0.046 0.954 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.899 11.789 -2.289 26.747 hybrid contribution 1.364 -0.909 0.892 1.866 sum -22.536 10.881 -1.397 25.064 Atomic orbital electron populations 1.21764 0.97284 1.00392 1.00951 1.22007 0.93526 0.99128 1.02395 1.21074 0.87034 0.93358 0.93223 0.94649 1.22189 0.83269 0.92429 0.98964 0.88637 1.45900 1.25954 1.50761 1.11548 1.17028 0.81120 0.79745 0.84825 1.90810 1.73213 1.53366 1.24244 1.20548 0.99681 1.03578 0.87993 1.26605 0.99574 1.04722 1.06202 1.82694 1.25454 1.43615 1.02491 1.27189 0.95872 1.01535 1.00034 1.19847 0.97279 0.94459 0.92674 1.21943 1.02814 0.93330 1.02576 1.21940 0.94243 1.02012 1.02443 1.66943 1.14008 1.09532 1.25056 1.23435 0.96692 0.99133 1.00365 1.21428 0.93058 0.92862 0.87667 1.44426 0.98329 1.68376 1.20683 1.18900 0.89936 1.35914 0.90854 0.90767 1.24905 0.97214 1.00950 0.96964 1.69920 1.10683 1.52855 1.22887 0.86230 0.79381 0.79076 0.81243 1.21100 1.21623 1.21139 0.93420 0.93459 0.93724 0.92358 0.91685 0.75781 0.79393 0.87756 0.91007 0.91813 0.92236 0.91834 0.91010 0.92236 0.91882 0.91987 0.90785 0.95375 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.58 37.16 0.36 -1.98 16 2 C -0.13 -2.54 5.41 -26.73 -0.14 -2.68 16 3 C 0.16 3.34 2.94 -66.95 -0.20 3.14 16 4 H 0.04 0.73 7.71 -51.93 -0.40 0.33 16 5 C 0.14 2.59 2.02 -66.09 -0.13 2.46 16 6 H 0.10 1.95 7.18 -51.93 -0.37 1.58 16 7 N -0.69 -11.47 4.91 -53.15 -0.26 -11.73 16 8 C 0.59 9.90 7.80 -12.59 -0.10 9.80 16 9 O -0.54 -10.48 16.36 5.25 0.09 -10.39 16 10 C 0.02 0.23 6.70 -84.53 -0.57 -0.33 16 11 C -0.23 -2.61 10.62 29.65 0.31 -2.29 16 12 S 0.20 1.61 22.22 -107.50 -2.39 -0.77 16 13 C 0.03 0.33 6.00 -13.61 -0.08 0.25 16 14 C -0.02 -0.14 3.34 -91.77 -0.31 -0.45 16 15 C -0.15 -0.81 9.09 37.16 0.34 -0.47 16 16 C -0.15 -0.79 9.09 37.16 0.34 -0.45 16 17 N -0.44 -5.61 10.12 -8.51 -0.09 -5.69 16 18 C -0.16 -3.19 6.77 -24.58 -0.17 -3.36 16 19 C 0.18 4.31 5.41 -2.53 -0.01 4.30 16 20 N -0.59 -14.97 3.13 -162.57 -0.51 -15.48 16 21 C -0.23 -6.25 9.75 -15.06 -0.15 -6.40 16 22 H 0.07 1.98 7.83 -52.48 -0.41 1.56 16 23 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 24 N -0.92 -26.86 10.57 55.49 0.59 -26.27 16 25 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.77 7.40 -51.93 -0.38 0.38 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.20 8.07 -51.93 -0.42 0.78 16 33 H 0.06 1.34 7.90 -51.93 -0.41 0.93 16 34 H 0.41 6.29 7.89 -40.82 -0.32 5.97 16 35 H 0.19 1.97 8.03 -52.49 -0.42 1.55 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.28 7.92 -51.93 -0.41 -0.13 16 40 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.27 7.91 -51.93 -0.41 -0.14 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.07 2.01 6.93 -51.93 -0.36 1.65 16 46 H 0.03 0.75 8.06 -51.93 -0.42 0.33 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 392.58 15.07 5.92 5.92 Total: -1.00 -31.70 392.58 -9.97 -41.66 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.68 Total: 4.41 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -0.60 Total: 1.35 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.27 Total: -59.18 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.39 Total: -0.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.70 -9.97 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087764534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.604 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds