Wall clock time and date at job start Tue Mar 31 2020 19:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47011 * 2 1 4 4 H 1.08996 * 109.87708 * 55.79693 * 3 2 1 5 5 C 1.54331 * 109.87872 * 294.78330 * 3 2 1 6 6 H 1.08997 * 110.72068 * 336.93288 * 5 3 2 7 7 N 1.46503 * 110.71749 * 100.02792 * 5 3 2 8 8 C 1.34772 * 119.99609 * 204.99845 * 7 5 3 9 9 O 1.21630 * 120.00196 * 0.02562 * 8 7 5 10 10 C 1.47273 * 120.00143 * 180.02562 * 8 7 5 11 11 C 1.35202 * 123.14403 * 179.97438 * 10 8 7 12 12 S 1.70945 * 108.82707 * 180.02562 * 11 10 8 13 13 C 1.70775 * 91.12785 * 359.97438 * 12 11 10 14 14 C 1.50701 * 124.72036 * 180.02562 * 13 12 11 15 15 C 1.53003 * 109.46460 * 299.95961 * 14 13 12 16 16 C 1.52999 * 109.47115 * 59.95741 * 14 13 12 17 17 N 1.28648 * 110.55786 * 0.02562 * 13 12 11 18 18 C 1.55154 * 102.94141 * 218.38848 * 5 3 2 19 19 C 1.54912 * 101.58021 * 35.50267 * 18 5 3 20 20 N 1.47015 * 109.88186 * 176.97924 * 3 2 1 21 21 C 1.36937 * 125.64893 * 298.38776 * 20 3 2 22 22 H 1.08004 * 119.99859 * 345.37974 * 21 20 3 23 23 C 1.38811 * 120.00424 * 165.37876 * 21 20 3 24 24 N 1.31622 * 119.99825 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00118 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47402 * 60.00159 * 25 23 21 27 27 H 1.48502 * 109.46940 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47334 * 300.00011 * 25 23 21 29 29 H 1.09001 * 109.47487 * 305.58447 * 1 2 3 30 30 H 1.09002 * 109.47130 * 65.58852 * 1 2 3 31 31 H 1.09004 * 109.47153 * 185.58311 * 1 2 3 32 32 H 1.08997 * 109.47355 * 239.99775 * 2 1 3 33 33 H 1.09003 * 109.46947 * 119.99388 * 2 1 3 34 34 H 0.96997 * 120.00248 * 25.00084 * 7 5 3 35 35 H 1.07997 * 125.58430 * 0.05107 * 11 10 8 36 36 H 1.08990 * 109.47169 * 179.97438 * 14 13 12 37 37 H 1.09010 * 109.46870 * 179.97438 * 15 14 13 38 38 H 1.08998 * 109.47757 * 299.99416 * 15 14 13 39 39 H 1.08996 * 109.47489 * 60.00609 * 15 14 13 40 40 H 1.08995 * 109.47446 * 60.00249 * 16 14 13 41 41 H 1.08998 * 109.46909 * 180.02562 * 16 14 13 42 42 H 1.09005 * 109.47066 * 300.00109 * 16 14 13 43 43 H 1.08997 * 111.00395 * 153.57190 * 18 5 3 44 44 H 1.08998 * 111.00669 * 277.42878 * 18 5 3 45 45 H 1.08999 * 110.36659 * 204.14911 * 19 18 5 46 46 H 1.09005 * 110.36766 * 81.82856 * 19 18 5 47 47 H 0.96998 * 120.00015 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6203 1.9840 0.8477 5 6 1.6413 2.1401 -1.3177 6 1 1.4635 1.4064 -2.1039 7 7 0.4592 2.9829 -1.1209 8 6 -0.3448 3.2699 -2.1637 9 8 -0.0893 2.8289 -3.2681 10 6 -1.5328 4.1176 -1.9661 11 6 -2.3814 4.4457 -2.9662 12 16 -3.6229 5.4360 -2.3337 13 6 -2.9382 5.3544 -0.7713 14 6 -3.5040 6.0318 0.4502 15 6 -3.5499 7.5437 0.2195 16 6 -4.9192 5.5126 0.7119 17 7 -1.8724 4.6341 -0.7822 18 6 2.8861 3.0075 -1.6421 19 6 4.0371 2.0989 -1.1427 20 7 3.5083 1.4537 0.0729 21 6 4.2603 0.9481 1.0995 22 1 3.7940 0.7101 2.0441 23 6 5.6219 0.7413 0.9261 24 7 6.1903 1.0317 -0.2250 25 14 6.6475 0.0508 2.3263 26 1 6.1274 -1.2866 2.7082 27 1 8.0615 -0.0736 1.8897 28 1 6.5693 0.9643 3.4945 29 1 -0.3634 0.5980 0.8357 30 1 -0.3633 0.4247 -0.9358 31 1 -0.3634 -1.0228 0.1000 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.2553 3.3343 -0.2401 35 1 -2.2901 4.1330 -3.9959 36 1 -2.8721 5.8149 1.3114 37 1 -3.9595 8.0337 1.1029 38 1 -2.5417 7.9137 0.0331 39 1 -4.1817 7.7608 -0.6417 40 1 -4.8865 4.4356 0.8762 41 1 -5.3285 6.0029 1.5952 42 1 -5.5510 5.7298 -0.1494 43 1 2.9679 3.1880 -2.7139 44 1 2.8624 3.9470 -1.0899 45 1 4.9160 2.6972 -0.9029 46 1 4.2816 1.3485 -1.8946 47 1 7.1419 0.8876 -0.3460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087764534.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:40 Heat of formation + Delta-G solvation = -4.798573 kcal Electronic energy + Delta-G solvation = -27289.219659 eV Core-core repulsion = 23597.999235 eV Total energy + Delta-G solvation = -3691.220423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68516 -40.38291 -39.11151 -36.41669 -35.68271 -34.32885 -33.51695 -31.23914 -30.79217 -28.42659 -28.02985 -27.01130 -26.05496 -24.38828 -23.34557 -22.15540 -21.67509 -21.42026 -20.68902 -19.39229 -18.76140 -17.69434 -17.28468 -16.76622 -16.57279 -16.42666 -15.79045 -15.58676 -15.53379 -15.13195 -15.09192 -14.76556 -14.38355 -14.21841 -13.87015 -13.70803 -13.59333 -13.27731 -13.05705 -13.00439 -12.89707 -12.70638 -12.66031 -12.59602 -12.26962 -12.12726 -12.09009 -12.03967 -11.96898 -11.86993 -11.59843 -11.42987 -11.22770 -10.83065 -10.67826 -10.66049 -10.15904 -9.80003 -8.84898 -7.86068 -5.24602 -0.51836 0.24145 0.59056 0.88804 1.46676 1.49780 1.55924 2.08916 2.26127 2.51041 2.87067 3.33508 3.52469 3.69154 3.79926 3.86512 4.01397 4.11572 4.14413 4.18189 4.20729 4.31738 4.36532 4.49711 4.56189 4.59961 4.69842 4.79055 4.79793 4.85334 4.93755 4.96833 4.97526 5.09665 5.12927 5.17848 5.24773 5.34589 5.37855 5.40804 5.46390 5.54411 5.60610 5.69089 6.21755 6.27998 6.59790 7.07526 7.08536 7.74833 8.42651 9.25182 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017998 B = 0.002656 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.350835 B =10541.536980 C =10964.758420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.124 4.124 3 C 0.160 3.840 4 H 0.046 0.954 5 C 0.154 3.846 6 H 0.083 0.917 7 N -0.686 5.686 8 C 0.591 3.409 9 O -0.572 6.572 10 C -0.011 4.011 11 C -0.241 4.241 12 S 0.294 5.706 13 C 0.022 3.978 14 C -0.022 4.022 15 C -0.146 4.146 16 C -0.146 4.146 17 N -0.468 5.468 18 C -0.142 4.142 19 C 0.184 3.816 20 N -0.612 5.612 21 C -0.236 4.236 22 H 0.081 0.919 23 C -0.061 4.061 24 N -0.949 5.949 25 Si 0.977 3.023 26 H -0.277 1.277 27 H -0.296 1.296 28 H -0.275 1.275 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.414 0.586 35 H 0.193 0.807 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.051 0.949 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.043 0.957 46 H -0.002 1.002 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.163 13.076 -0.580 30.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.164 4.164 3 C 0.053 3.947 4 H 0.064 0.936 5 C 0.049 3.951 6 H 0.101 0.899 7 N -0.335 5.335 8 C 0.376 3.624 9 O -0.452 6.452 10 C -0.146 4.146 11 C -0.384 4.384 12 S 0.553 5.447 13 C -0.258 4.258 14 C -0.044 4.044 15 C -0.205 4.205 16 C -0.204 4.204 17 N -0.183 5.183 18 C -0.182 4.182 19 C 0.058 3.942 20 N -0.337 5.337 21 C -0.365 4.365 22 H 0.099 0.901 23 C -0.255 4.255 24 N -0.597 5.597 25 Si 0.805 3.195 26 H -0.203 1.203 27 H -0.222 1.222 28 H -0.201 1.201 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.251 0.749 35 H 0.210 0.790 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -27.307 13.102 -1.224 30.313 hybrid contribution 2.255 -1.222 0.542 2.621 sum -25.053 11.880 -0.682 27.735 Atomic orbital electron populations 1.21631 0.94180 1.01889 1.01311 1.21883 0.96121 0.97526 1.00842 1.21214 0.84636 0.94584 0.94286 0.93648 1.21760 0.83783 0.92022 0.97581 0.89907 1.45697 1.25145 1.50499 1.12164 1.17433 0.81616 0.79352 0.84011 1.90782 1.74259 1.54786 1.25376 1.20151 0.99676 1.05261 0.89510 1.26900 1.00386 1.04813 1.06260 1.82351 1.22132 1.40523 0.99735 1.27764 0.95280 1.00598 1.02123 1.20003 0.97913 0.95269 0.91241 1.21957 1.02489 0.92076 1.03946 1.21951 0.93207 1.01474 1.03762 1.66914 1.15665 1.10888 1.24820 1.23251 0.95605 0.98641 1.00664 1.21127 0.93629 0.92287 0.87112 1.44654 1.00310 1.68464 1.20228 1.19269 0.90457 1.35067 0.91695 0.90105 1.25726 0.98481 1.01851 0.99404 1.70132 1.10410 1.54291 1.24883 0.85180 0.77195 0.78606 0.78511 1.20305 1.22236 1.20118 0.92077 0.93789 0.91875 0.94207 0.92923 0.74916 0.79002 0.88632 0.89261 0.93014 0.91132 0.92841 0.89283 0.91151 0.91207 0.91191 0.93906 0.98438 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.04 9.58 71.98 0.69 -3.35 16 2 C -0.12 -4.83 5.41 30.59 0.17 -4.66 16 3 C 0.16 6.67 2.94 45.35 0.13 6.80 16 4 H 0.05 1.84 7.71 -2.39 -0.02 1.82 16 5 C 0.15 5.96 2.02 46.18 0.09 6.05 16 6 H 0.08 3.46 7.18 -2.39 -0.02 3.45 16 7 N -0.69 -22.57 4.91 -440.31 -2.16 -24.74 16 8 C 0.59 19.75 7.80 86.62 0.68 20.43 16 9 O -0.57 -22.46 16.36 -4.13 -0.07 -22.53 16 10 C -0.01 -0.30 6.70 40.56 0.27 -0.03 16 11 C -0.24 -5.09 10.62 67.12 0.71 -4.37 16 12 S 0.29 3.83 22.22 -56.49 -1.26 2.57 16 13 C 0.02 0.37 6.00 88.58 0.53 0.91 16 14 C -0.02 -0.25 3.34 -11.54 -0.04 -0.29 16 15 C -0.15 -1.16 9.09 71.98 0.65 -0.51 16 16 C -0.15 -1.10 9.09 71.98 0.65 -0.45 16 17 N -0.47 -11.30 10.12 -180.83 -1.83 -13.13 16 18 C -0.14 -5.93 6.77 31.99 0.22 -5.71 16 19 C 0.18 9.51 5.41 86.86 0.47 9.98 16 20 N -0.61 -31.71 3.13 -668.26 -2.09 -33.80 16 21 C -0.24 -13.18 9.75 84.03 0.82 -12.36 16 22 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 23 C -0.06 -3.50 5.47 84.86 0.46 -3.03 16 24 N -0.95 -57.76 10.57 21.65 0.23 -57.53 16 25 Si 0.98 45.98 29.55 68.60 2.03 48.01 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 28 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.38 7.40 -2.39 -0.02 1.36 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.67 8.07 -2.39 -0.02 1.65 16 33 H 0.05 2.16 7.90 -2.39 -0.02 2.14 16 34 H 0.41 12.55 7.89 -92.71 -0.73 11.81 16 35 H 0.19 3.78 8.03 -2.91 -0.02 3.76 16 36 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.07 0.40 7.92 -2.39 -0.02 0.38 16 40 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.37 7.91 -2.38 -0.02 0.36 16 43 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 44 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 45 H 0.04 2.45 6.93 -2.39 -0.02 2.43 16 46 H 0.00 -0.14 8.06 -2.38 -0.02 -0.16 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -71.07 392.58 1.60 -69.47 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.23 Total: 22.26 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 6.51 Total: 9.41 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -5.85 Total: -129.20 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.07 Total: -22.53 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 3.83 SS G_CDS: -1.26 Total: 2.57 kcal Total: -71.07 1.60 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087764534.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.675 kcal (2) G-P(sol) polarization free energy of solvation -71.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds