Wall clock time and date at job start Tue Mar 31 2020 19:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46841 * 2 1 4 4 H 1.09001 * 109.99699 * 304.57292 * 3 2 1 5 5 C 1.54326 * 109.87795 * 183.47980 * 3 2 1 6 6 H 1.08996 * 110.72419 * 336.92935 * 5 3 2 7 7 N 1.46499 * 110.71776 * 100.02678 * 5 3 2 8 8 C 1.34787 * 119.99666 * 204.99762 * 7 5 3 9 9 O 1.21685 * 119.99947 * 359.97438 * 8 7 5 10 10 C 1.46680 * 119.99809 * 179.97438 * 8 7 5 11 11 C 1.35664 * 126.13289 * 359.69541 * 10 8 7 12 12 N 1.30945 * 114.19409 * 179.78484 * 11 10 8 13 13 C 1.29427 * 117.36152 * 0.52044 * 12 11 10 14 14 C 1.50701 * 124.80663 * 179.69019 * 13 12 11 15 15 C 1.53004 * 109.46606 * 300.02449 * 14 13 12 16 16 C 1.52999 * 109.46974 * 60.02089 * 14 13 12 17 17 S 1.70963 * 110.39052 * 359.71219 * 13 12 11 18 18 C 1.55157 * 102.94132 * 218.38554 * 5 3 2 19 19 C 1.54693 * 101.67632 * 35.33685 * 18 5 3 20 20 N 1.47019 * 109.88641 * 65.67108 * 3 2 1 21 21 C 1.36933 * 125.64786 * 298.32388 * 20 3 2 22 22 H 1.08000 * 120.00047 * 334.04693 * 21 20 3 23 23 C 1.38813 * 120.00056 * 154.05344 * 21 20 3 24 24 N 1.31616 * 119.99893 * 335.00851 * 23 21 20 25 25 Si 1.86801 * 120.00104 * 155.01311 * 23 21 20 26 26 H 1.48503 * 109.47000 * 359.97438 * 25 23 21 27 27 H 1.48488 * 109.47127 * 239.99762 * 25 23 21 28 28 H 1.48500 * 109.46959 * 119.99354 * 25 23 21 29 29 H 1.09005 * 109.47312 * 291.72386 * 1 2 3 30 30 H 1.09001 * 109.47510 * 51.72118 * 1 2 3 31 31 H 1.09004 * 109.47289 * 171.72200 * 1 2 3 32 32 H 1.08996 * 109.47516 * 240.00039 * 2 1 3 33 33 H 1.09003 * 109.47204 * 119.99438 * 2 1 3 34 34 H 0.96995 * 120.00446 * 24.99638 * 7 5 3 35 35 H 1.08005 * 122.90006 * 359.95679 * 11 10 8 36 36 H 1.09003 * 109.47255 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.47429 * 59.99977 * 15 14 13 38 38 H 1.09002 * 109.46562 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46968 * 299.99473 * 15 14 13 40 40 H 1.09002 * 109.46851 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47317 * 300.00180 * 16 14 13 42 42 H 1.09005 * 109.46954 * 60.00542 * 16 14 13 43 43 H 1.09001 * 111.00379 * 153.57896 * 18 5 3 44 44 H 1.08997 * 111.00602 * 277.43069 * 18 5 3 45 45 H 1.09002 * 110.39312 * 204.36518 * 19 18 5 46 46 H 1.09003 * 110.23772 * 82.10875 * 19 18 5 47 47 H 0.97003 * 120.00127 * 353.74014 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6161 1.9877 -0.8434 5 6 3.5806 1.4545 -0.0881 6 1 3.9947 0.5117 0.2693 7 7 4.0192 1.7243 -1.4596 8 6 5.2287 1.2996 -1.8762 9 8 5.9564 0.6924 -1.1129 10 6 5.6676 1.5692 -3.2495 11 6 4.9587 2.2262 -4.2015 12 7 5.5784 2.3395 -5.3495 13 6 6.7585 1.8164 -5.4426 14 6 7.6156 1.8424 -6.6819 15 6 6.8819 1.1367 -7.8242 16 6 7.8978 3.2934 -7.0765 17 16 7.2073 1.0913 -3.9609 18 6 3.9735 2.6232 0.8538 19 6 2.9016 2.5053 1.9629 20 7 1.6696 2.1039 1.2597 21 6 0.3918 2.3169 1.7037 22 1 -0.4205 2.3909 0.9958 23 6 0.1406 2.4380 3.0635 24 7 0.9577 1.8862 3.9353 25 14 -1.3572 3.3841 3.6560 26 1 -2.1093 3.9036 2.4857 27 1 -0.9205 4.5198 4.5071 28 1 -2.2322 2.4811 4.4462 29 1 -0.3634 0.3804 0.9547 30 1 -0.3634 0.6366 -0.8067 31 1 -0.3634 -1.0170 -0.1480 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4393 2.2086 -2.0679 35 1 3.9699 2.6239 -4.0267 36 1 8.5570 1.3300 -6.4834 37 1 5.9405 1.6489 -8.0226 38 1 7.5020 1.1551 -8.7204 39 1 6.6808 0.1029 -7.5430 40 1 8.5181 3.3121 -7.9726 41 1 6.9564 3.8057 -7.2750 42 1 8.4205 3.7961 -6.2627 43 1 4.9750 2.4787 1.2589 44 1 3.8959 3.5817 0.3405 45 1 2.7599 3.4661 2.4579 46 1 3.1905 1.7434 2.6870 47 1 1.6831 1.3196 3.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087854059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:37 Heat of formation + Delta-G solvation = 13.977864 kcal Electronic energy + Delta-G solvation = -26944.674225 eV Core-core repulsion = 23254.268009 eV Total energy + Delta-G solvation = -3690.406216 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45408 -39.51285 -37.88474 -35.81006 -34.32218 -32.62145 -32.11681 -30.35144 -28.51355 -27.59652 -26.95562 -26.17983 -24.41278 -22.97449 -22.01683 -21.43698 -20.40924 -19.97318 -19.05898 -18.40692 -17.38696 -17.15281 -16.13074 -15.50116 -15.40565 -14.74137 -14.61508 -14.49565 -14.39727 -14.05114 -13.78928 -13.58806 -13.28725 -13.10152 -12.91939 -12.54485 -12.44602 -12.19654 -12.08816 -11.84066 -11.67221 -11.64927 -11.45438 -11.12883 -10.97922 -10.78014 -10.56266 -10.40474 -10.19450 -10.14923 -10.08176 -9.87490 -9.72493 -9.70986 -9.45376 -9.23239 -8.81450 -8.41542 -6.92996 -6.07115 -3.24390 0.00101 0.88108 1.40931 2.23317 3.10773 3.21571 3.49223 3.52116 3.64532 3.64815 4.34288 4.50475 4.54973 4.61075 4.69619 4.94041 4.99121 5.10956 5.22821 5.28128 5.32067 5.33588 5.39619 5.40940 5.49138 5.64634 5.67895 5.79654 5.89136 5.90120 5.94806 6.01178 6.12545 6.24236 6.33208 6.45391 6.55466 6.63265 6.73824 6.91739 7.01034 7.07526 7.31491 7.32128 7.47853 7.85277 8.14280 8.47652 8.99804 9.77216 10.35310 11.20769 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.002356 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.740278 B =11882.413717 C =12044.080393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.157 3.843 4 H 0.037 0.963 5 C 0.136 3.864 6 H 0.098 0.902 7 N -0.701 5.701 8 C 0.592 3.408 9 O -0.537 6.537 10 C -0.291 4.291 11 C 0.092 3.908 12 N -0.473 5.473 13 C 0.044 3.956 14 C -0.018 4.018 15 C -0.140 4.140 16 C -0.140 4.140 17 S 0.222 5.778 18 C -0.145 4.145 19 C 0.143 3.857 20 N -0.589 5.589 21 C -0.325 4.325 22 H 0.064 0.936 23 C -0.024 4.024 24 N -0.914 5.914 25 Si 1.069 2.931 26 H -0.292 1.292 27 H -0.290 1.290 28 H -0.294 1.294 29 H 0.092 0.908 30 H 0.038 0.962 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.056 0.944 34 H 0.399 0.601 35 H 0.181 0.819 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.057 0.943 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.030 0.970 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.989 -0.043 -21.809 25.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.055 0.945 5 C 0.031 3.969 6 H 0.116 0.884 7 N -0.351 5.351 8 C 0.377 3.623 9 O -0.415 6.415 10 C -0.415 4.415 11 C -0.066 4.066 12 N -0.187 5.187 13 C -0.230 4.230 14 C -0.040 4.040 15 C -0.199 4.199 16 C -0.199 4.199 17 S 0.482 5.518 18 C -0.184 4.184 19 C 0.018 3.982 20 N -0.316 5.316 21 C -0.453 4.453 22 H 0.081 0.919 23 C -0.227 4.227 24 N -0.553 5.553 25 Si 0.899 3.101 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.221 1.221 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.234 0.766 35 H 0.198 0.802 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.324 -0.199 -19.956 23.996 hybrid contribution -0.488 -0.039 -1.428 1.510 sum 12.835 -0.238 -21.384 24.942 Atomic orbital electron populations 1.21891 0.95590 0.98883 1.04224 1.21877 0.97126 0.97496 0.99693 1.21202 0.89456 0.92462 0.91967 0.94536 1.22199 0.95756 0.99458 0.79472 0.88412 1.45814 1.17034 1.57494 1.14793 1.16694 0.82046 0.79193 0.84393 1.90847 1.53855 1.41336 1.55450 1.25831 1.01076 1.13428 1.01195 1.22193 1.00906 0.97068 0.86463 1.66025 1.07313 1.20591 1.24721 1.27589 0.95702 0.99220 1.00535 1.19896 0.95946 0.98948 0.89249 1.21815 1.01194 1.00313 0.96607 1.21814 1.02716 0.93852 1.01548 1.84086 1.14503 1.49903 1.03320 1.23171 0.99502 0.97676 0.98066 1.21510 0.85274 0.98670 0.92783 1.44486 1.01947 1.65085 1.20035 1.19643 0.83674 1.49323 0.92688 0.91850 1.25837 1.03987 1.00570 0.92296 1.70698 1.18859 1.29442 1.36344 0.83475 0.75058 0.76403 0.75190 1.21793 1.21712 1.22130 0.88935 0.94289 0.95196 0.94315 0.92512 0.76615 0.80207 0.89133 0.91277 0.91467 0.92432 0.91468 0.91278 0.92425 0.91496 0.91541 0.93063 0.95182 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.97 37.15 0.33 -2.56 16 2 C -0.12 -2.35 5.46 -26.73 -0.15 -2.50 16 3 C 0.16 3.06 3.00 -66.95 -0.20 2.86 16 4 H 0.04 0.70 7.72 -51.93 -0.40 0.30 16 5 C 0.14 2.39 2.85 -66.10 -0.19 2.20 16 6 H 0.10 1.88 7.25 -51.93 -0.38 1.50 16 7 N -0.70 -10.15 5.16 -53.33 -0.28 -10.42 16 8 C 0.59 9.04 7.79 -12.85 -0.10 8.94 16 9 O -0.54 -10.04 16.61 5.20 0.09 -9.96 16 10 C -0.29 -3.64 6.48 -37.10 -0.24 -3.88 16 11 C 0.09 1.01 10.93 -18.85 -0.21 0.80 16 12 N -0.47 -5.16 10.49 -11.50 -0.12 -5.28 16 13 C 0.04 0.42 5.90 -13.29 -0.08 0.34 16 14 C -0.02 -0.12 3.35 -91.77 -0.31 -0.43 16 15 C -0.14 -0.84 9.17 37.16 0.34 -0.50 16 16 C -0.14 -0.84 9.17 37.16 0.34 -0.50 16 17 S 0.22 2.34 23.00 -107.50 -2.47 -0.13 16 18 C -0.14 -2.66 6.76 -24.70 -0.17 -2.83 16 19 C 0.14 3.24 5.56 -2.65 -0.01 3.22 16 20 N -0.59 -13.92 2.92 -162.70 -0.48 -14.39 16 21 C -0.33 -8.50 7.23 -15.06 -0.11 -8.61 16 22 H 0.06 1.67 7.23 -52.49 -0.38 1.29 16 23 C -0.02 -0.66 5.18 -17.43 -0.09 -0.75 16 24 N -0.91 -26.77 13.05 55.49 0.72 -26.05 16 25 Si 1.07 24.77 29.99 -169.99 -5.10 19.67 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 H 0.09 2.11 5.53 -51.93 -0.29 1.83 16 30 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 4.76 7.08 -40.82 -0.29 4.47 16 35 H 0.18 1.55 7.15 -52.48 -0.38 1.18 16 36 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 46 H 0.03 0.74 6.73 -51.93 -0.35 0.39 16 47 H 0.27 8.00 6.19 -40.82 -0.25 7.74 16 LS Contribution 389.16 15.07 5.86 5.86 Total: -1.00 -31.44 389.16 -10.02 -41.46 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.42 Total: 3.42 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -0.83 Total: -4.18 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.15 Total: -56.14 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.10 Total: 19.67 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.47 Total: -0.13 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.44 -10.02 -41.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087854059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.442 kcal (2) G-P(sol) polarization free energy of solvation -31.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds