Wall clock time and date at job start Tue Mar 31 2020 19:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46841 * 2 1 4 4 H 1.09001 * 109.99699 * 304.57292 * 3 2 1 5 5 C 1.54326 * 109.87795 * 183.47980 * 3 2 1 6 6 H 1.08996 * 110.72419 * 336.92935 * 5 3 2 7 7 N 1.46499 * 110.71776 * 100.02678 * 5 3 2 8 8 C 1.34787 * 119.99666 * 204.99762 * 7 5 3 9 9 O 1.21685 * 119.99947 * 359.97438 * 8 7 5 10 10 C 1.46680 * 119.99809 * 179.97438 * 8 7 5 11 11 C 1.35664 * 126.13289 * 359.69541 * 10 8 7 12 12 N 1.30945 * 114.19409 * 179.78484 * 11 10 8 13 13 C 1.29427 * 117.36152 * 0.52044 * 12 11 10 14 14 C 1.50701 * 124.80663 * 179.69019 * 13 12 11 15 15 C 1.53004 * 109.46606 * 300.02449 * 14 13 12 16 16 C 1.52999 * 109.46974 * 60.02089 * 14 13 12 17 17 S 1.70963 * 110.39052 * 359.71219 * 13 12 11 18 18 C 1.55157 * 102.94132 * 218.38554 * 5 3 2 19 19 C 1.54693 * 101.67632 * 35.33685 * 18 5 3 20 20 N 1.47019 * 109.88641 * 65.67108 * 3 2 1 21 21 C 1.36933 * 125.64786 * 298.32388 * 20 3 2 22 22 H 1.08000 * 120.00047 * 334.04693 * 21 20 3 23 23 C 1.38813 * 120.00056 * 154.05344 * 21 20 3 24 24 N 1.31616 * 119.99893 * 335.00851 * 23 21 20 25 25 Si 1.86801 * 120.00104 * 155.01311 * 23 21 20 26 26 H 1.48503 * 109.47000 * 359.97438 * 25 23 21 27 27 H 1.48488 * 109.47127 * 239.99762 * 25 23 21 28 28 H 1.48500 * 109.46959 * 119.99354 * 25 23 21 29 29 H 1.09005 * 109.47312 * 291.72386 * 1 2 3 30 30 H 1.09001 * 109.47510 * 51.72118 * 1 2 3 31 31 H 1.09004 * 109.47289 * 171.72200 * 1 2 3 32 32 H 1.08996 * 109.47516 * 240.00039 * 2 1 3 33 33 H 1.09003 * 109.47204 * 119.99438 * 2 1 3 34 34 H 0.96995 * 120.00446 * 24.99638 * 7 5 3 35 35 H 1.08005 * 122.90006 * 359.95679 * 11 10 8 36 36 H 1.09003 * 109.47255 * 180.02562 * 14 13 12 37 37 H 1.08997 * 109.47429 * 59.99977 * 15 14 13 38 38 H 1.09002 * 109.46562 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.46968 * 299.99473 * 15 14 13 40 40 H 1.09002 * 109.46851 * 179.97438 * 16 14 13 41 41 H 1.08997 * 109.47317 * 300.00180 * 16 14 13 42 42 H 1.09005 * 109.46954 * 60.00542 * 16 14 13 43 43 H 1.09001 * 111.00379 * 153.57896 * 18 5 3 44 44 H 1.08997 * 111.00602 * 277.43069 * 18 5 3 45 45 H 1.09002 * 110.39312 * 204.36518 * 19 18 5 46 46 H 1.09003 * 110.23772 * 82.10875 * 19 18 5 47 47 H 0.97003 * 120.00127 * 353.74014 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6161 1.9877 -0.8434 5 6 3.5806 1.4545 -0.0881 6 1 3.9947 0.5117 0.2693 7 7 4.0192 1.7243 -1.4596 8 6 5.2287 1.2996 -1.8762 9 8 5.9564 0.6924 -1.1129 10 6 5.6676 1.5692 -3.2495 11 6 4.9587 2.2262 -4.2015 12 7 5.5784 2.3395 -5.3495 13 6 6.7585 1.8164 -5.4426 14 6 7.6156 1.8424 -6.6819 15 6 6.8819 1.1367 -7.8242 16 6 7.8978 3.2934 -7.0765 17 16 7.2073 1.0913 -3.9609 18 6 3.9735 2.6232 0.8538 19 6 2.9016 2.5053 1.9629 20 7 1.6696 2.1039 1.2597 21 6 0.3918 2.3169 1.7037 22 1 -0.4205 2.3909 0.9958 23 6 0.1406 2.4380 3.0635 24 7 0.9577 1.8862 3.9353 25 14 -1.3572 3.3841 3.6560 26 1 -2.1093 3.9036 2.4857 27 1 -0.9205 4.5198 4.5071 28 1 -2.2322 2.4811 4.4462 29 1 -0.3634 0.3804 0.9547 30 1 -0.3634 0.6366 -0.8067 31 1 -0.3634 -1.0170 -0.1480 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.4393 2.2086 -2.0679 35 1 3.9699 2.6239 -4.0267 36 1 8.5570 1.3300 -6.4834 37 1 5.9405 1.6489 -8.0226 38 1 7.5020 1.1551 -8.7204 39 1 6.6808 0.1029 -7.5430 40 1 8.5181 3.3121 -7.9726 41 1 6.9564 3.8057 -7.2750 42 1 8.4205 3.7961 -6.2627 43 1 4.9750 2.4787 1.2589 44 1 3.8959 3.5817 0.3405 45 1 2.7599 3.4661 2.4579 46 1 3.1905 1.7434 2.6870 47 1 1.6831 1.3196 3.6291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087854059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:36 Heat of formation + Delta-G solvation = -5.364060 kcal Electronic energy + Delta-G solvation = -26945.512954 eV Core-core repulsion = 23254.268009 eV Total energy + Delta-G solvation = -3691.244945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.49308 -40.65579 -39.42556 -36.41137 -35.85077 -34.33656 -33.75903 -31.49813 -30.18390 -28.45843 -28.04529 -27.09854 -26.21820 -23.94889 -23.49767 -22.63849 -21.82758 -21.50608 -20.26318 -19.33168 -19.17689 -18.16012 -17.54588 -16.49370 -16.35534 -16.13347 -15.92765 -15.58743 -15.43537 -15.32312 -15.19225 -14.93623 -14.69836 -14.56909 -14.06087 -13.85446 -13.70011 -13.37925 -12.98146 -12.85995 -12.71952 -12.66441 -12.65652 -12.57185 -12.20727 -12.14033 -11.96853 -11.89011 -11.85967 -11.77958 -11.60218 -11.47380 -11.39212 -10.63917 -10.60504 -10.45461 -10.23934 -9.96535 -8.93077 -8.17975 -5.33004 -0.85908 0.04967 0.59425 1.32427 1.60292 1.67597 1.82402 2.00220 2.03644 2.67439 2.94835 3.26016 3.41559 3.65904 3.70260 3.72522 3.74678 4.04091 4.06835 4.10049 4.12445 4.25200 4.36413 4.42777 4.46331 4.54096 4.64266 4.80845 4.82833 4.83421 4.91042 4.95074 4.96779 4.96894 5.04378 5.10103 5.11519 5.20177 5.28531 5.34739 5.39996 5.49212 5.63624 5.84181 6.30779 6.39195 6.51356 6.94502 6.99377 7.74426 8.35523 9.08322 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.024540 B = 0.002356 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.740278 B =11882.413717 C =12044.080393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.055 0.945 5 C 0.152 3.848 6 H 0.081 0.919 7 N -0.690 5.690 8 C 0.597 3.403 9 O -0.577 6.577 10 C -0.324 4.324 11 C 0.110 3.890 12 N -0.491 5.491 13 C 0.063 3.937 14 C -0.023 4.023 15 C -0.138 4.138 16 C -0.138 4.138 17 S 0.223 5.777 18 C -0.129 4.129 19 C 0.148 3.852 20 N -0.606 5.606 21 C -0.310 4.310 22 H 0.065 0.935 23 C -0.082 4.082 24 N -0.950 5.950 25 Si 1.114 2.886 26 H -0.269 1.269 27 H -0.293 1.293 28 H -0.296 1.296 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.414 0.586 35 H 0.202 0.798 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.081 0.919 45 H 0.027 0.973 46 H 0.003 0.997 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.322 0.568 -25.368 28.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.049 3.951 4 H 0.073 0.927 5 C 0.046 3.954 6 H 0.099 0.901 7 N -0.341 5.341 8 C 0.384 3.616 9 O -0.458 6.458 10 C -0.448 4.448 11 C -0.049 4.049 12 N -0.205 5.205 13 C -0.211 4.211 14 C -0.045 4.045 15 C -0.196 4.196 16 C -0.197 4.197 17 S 0.483 5.517 18 C -0.168 4.168 19 C 0.022 3.978 20 N -0.332 5.332 21 C -0.439 4.439 22 H 0.083 0.917 23 C -0.278 4.278 24 N -0.593 5.593 25 Si 0.940 3.060 26 H -0.193 1.193 27 H -0.220 1.220 28 H -0.223 1.223 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.252 0.748 35 H 0.219 0.781 36 H 0.130 0.870 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.073 0.927 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.045 0.955 46 H 0.021 0.979 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.653 0.419 -23.579 27.249 hybrid contribution -0.519 -0.260 -0.511 0.774 sum 13.133 0.159 -24.090 27.438 Atomic orbital electron populations 1.21769 0.95503 1.00244 1.02434 1.21819 0.97109 0.97135 0.99745 1.21326 0.90831 0.92533 0.90425 0.92731 1.21757 0.94253 0.98288 0.81070 0.90095 1.45542 1.17337 1.57623 1.13598 1.16955 0.81445 0.78065 0.85116 1.90829 1.54965 1.43221 1.56835 1.25520 1.02731 1.16347 1.00195 1.22550 1.01336 0.95206 0.85834 1.66143 1.08034 1.21664 1.24676 1.28226 0.95294 0.96828 1.00797 1.20179 0.96374 0.99842 0.88118 1.21809 1.00955 0.99738 0.97147 1.21808 1.02420 0.92985 1.02445 1.84092 1.13824 1.50036 1.03740 1.23019 0.98176 0.98846 0.96779 1.21344 0.86460 0.96412 0.93596 1.44696 1.01559 1.65899 1.21042 1.19829 0.84707 1.46862 0.92532 0.91724 1.27058 1.05982 1.01586 0.93145 1.70818 1.20007 1.31614 1.36820 0.82857 0.72578 0.75100 0.75450 1.19340 1.22032 1.22285 0.92789 0.92913 0.93183 0.91449 0.95164 0.74782 0.78135 0.87030 0.92553 0.89245 0.92713 0.89239 0.92561 0.92738 0.90921 0.89993 0.95501 0.97931 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.35 8.97 71.98 0.65 -4.70 16 2 C -0.12 -4.45 5.46 30.59 0.17 -4.28 16 3 C 0.16 5.92 3.00 45.34 0.14 6.05 16 4 H 0.06 1.94 7.72 -2.39 -0.02 1.92 16 5 C 0.15 5.25 2.85 46.18 0.13 5.38 16 6 H 0.08 3.13 7.25 -2.39 -0.02 3.11 16 7 N -0.69 -18.71 5.16 -440.86 -2.28 -20.98 16 8 C 0.60 17.54 7.79 86.45 0.67 18.21 16 9 O -0.58 -21.50 16.61 -4.30 -0.07 -21.57 16 10 C -0.32 -7.57 6.48 23.88 0.15 -7.41 16 11 C 0.11 2.14 10.93 84.23 0.92 3.06 16 12 N -0.49 -9.57 10.49 -190.29 -2.00 -11.57 16 13 C 0.06 1.04 5.90 88.46 0.52 1.57 16 14 C -0.02 -0.24 3.35 -11.54 -0.04 -0.28 16 15 C -0.14 -1.26 9.17 71.98 0.66 -0.60 16 16 C -0.14 -1.27 9.17 71.98 0.66 -0.61 16 17 S 0.22 4.34 23.00 -56.49 -1.30 3.04 16 18 C -0.13 -4.71 6.76 31.91 0.22 -4.50 16 19 C 0.15 6.91 5.56 86.78 0.48 7.39 16 20 N -0.61 -28.92 2.92 -668.67 -1.95 -30.87 16 21 C -0.31 -16.36 7.23 84.03 0.61 -15.76 16 22 H 0.07 3.36 7.23 -2.91 -0.02 3.34 16 23 C -0.08 -4.55 5.18 84.86 0.44 -4.11 16 24 N -0.95 -57.94 13.05 21.65 0.28 -57.66 16 25 Si 1.11 50.59 29.99 68.60 2.06 52.65 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 28 H -0.30 -13.38 7.11 99.48 0.71 -12.67 16 29 H 0.05 2.46 5.53 -2.38 -0.01 2.45 16 30 H 0.05 1.81 8.13 -2.39 -0.02 1.79 16 31 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.41 8.69 7.08 -92.71 -0.66 8.03 16 35 H 0.20 2.82 7.15 -2.91 -0.02 2.80 16 36 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.05 0.54 8.14 -2.38 -0.02 0.53 16 43 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.00 0.15 6.73 -2.39 -0.02 0.13 16 47 H 0.25 15.90 6.19 -92.71 -0.57 15.32 16 Total: -1.00 -70.35 389.16 1.63 -68.71 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.51 Total: 18.84 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 6.38 Total: -0.59 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -5.94 Total: -121.08 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 2.06 Total: 52.65 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.30 Total: 3.04 kcal Total: -70.35 1.63 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087854059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.349 kcal (2) G-P(sol) polarization free energy of solvation -70.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds