Wall clock time and date at job start Tue Mar 31 2020 21:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.50197 * 2 1 4 4 C 1.53035 * 109.50133 * 239.93580 * 2 1 3 5 5 C 1.53045 * 109.53935 * 301.41237 * 4 2 1 6 6 C 1.53185 * 109.31351 * 298.63637 * 5 4 2 7 7 N 1.46933 * 108.77762 * 54.62973 * 6 5 4 8 8 C 1.34770 * 120.63064 * 126.36771 * 7 6 5 9 9 O 1.21631 * 119.99955 * 191.86383 * 8 7 6 10 10 C 1.47104 * 119.99992 * 11.86352 * 8 7 6 11 11 C 1.38389 * 127.99648 * 188.04125 * 10 8 7 12 12 C 1.37578 * 111.26236 * 180.02562 * 11 10 8 13 13 N 1.29557 * 117.94901 * 0.25428 * 12 11 10 14 14 S 1.56310 * 110.37995 * 359.60348 * 13 12 11 15 15 C 1.46928 * 118.73746 * 306.64665 * 7 6 5 16 16 H 1.08999 * 109.58566 * 293.56296 * 15 7 6 17 17 C 1.52998 * 109.58660 * 173.14211 * 15 7 6 18 18 C 1.52993 * 109.47347 * 179.86114 * 17 15 7 19 19 C 1.52999 * 109.47626 * 175.71963 * 18 17 15 20 20 N 1.46497 * 109.47360 * 179.97438 * 19 18 17 21 21 C 1.36942 * 119.99676 * 179.97438 * 20 19 18 22 22 H 1.08002 * 120.00415 * 359.97438 * 21 20 19 23 23 C 1.38811 * 119.99818 * 180.02562 * 21 20 19 24 24 N 1.31622 * 120.00197 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00084 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47153 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47279 * 119.99867 * 25 23 21 28 28 H 1.48505 * 109.47146 * 239.99625 * 25 23 21 29 29 H 1.08995 * 109.46992 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47591 * 300.06682 * 1 2 3 31 31 H 1.09005 * 109.47201 * 60.06535 * 1 2 3 32 32 H 1.09001 * 109.46555 * 181.39190 * 4 2 1 33 33 H 1.09007 * 109.45181 * 61.42744 * 4 2 1 34 34 H 1.08998 * 109.49578 * 178.67970 * 5 4 2 35 35 H 1.08998 * 109.51548 * 58.60127 * 5 4 2 36 36 H 1.09000 * 109.58868 * 294.84824 * 6 5 4 37 37 H 1.08991 * 109.70378 * 174.48665 * 6 5 4 38 38 H 1.07999 * 124.36880 * 0.06338 * 11 10 8 39 39 H 1.07992 * 121.02949 * 179.97438 * 12 11 10 40 40 H 1.09005 * 109.46991 * 299.85892 * 17 15 7 41 41 H 1.09005 * 109.47409 * 59.85726 * 17 15 7 42 42 H 1.09008 * 109.47239 * 295.71847 * 18 17 15 43 43 H 1.08996 * 109.47378 * 55.71543 * 18 17 15 44 44 H 1.09008 * 109.46717 * 300.00203 * 19 18 17 45 45 H 1.08996 * 109.47084 * 59.99400 * 19 18 17 46 46 H 0.96992 * 120.00358 * 0.02562 * 20 19 18 47 47 H 0.96991 * 120.00363 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7227 -1.2485 5 6 1.5031 -2.1554 -1.2666 6 6 2.0140 -2.9040 -0.0316 7 7 1.6515 -2.1385 1.1690 8 6 0.9739 -2.7224 2.1771 9 8 0.4923 -2.0403 3.0615 10 6 0.8168 -4.1847 2.2078 11 6 0.0361 -4.9398 3.0653 12 6 0.1464 -6.2829 2.7881 13 7 0.9274 -6.6406 1.8183 14 16 1.5835 -5.3857 1.1566 15 6 2.0364 -0.7226 1.2470 16 1 3.1221 -0.6414 1.2975 17 6 1.4134 -0.0896 2.4928 18 6 1.8185 1.3835 2.5733 19 6 1.1106 2.0432 3.7584 20 7 1.4991 3.4536 3.8358 21 6 0.9870 4.2516 4.8239 22 1 0.2964 3.8413 5.5458 23 6 1.3546 5.5881 4.8969 24 7 2.1958 6.0884 4.0168 25 14 0.6556 6.6768 6.2442 26 1 -0.2608 5.8800 7.0989 27 1 1.7651 7.2130 7.0729 28 1 -0.0937 7.8032 5.6317 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5148 0.8893 31 1 -0.3634 0.5128 -0.8906 32 1 3.1305 -0.7440 -1.2355 33 1 1.6986 -0.1951 -2.1389 34 1 1.8482 -2.6621 -2.1678 35 1 0.4133 -2.1355 -1.2550 36 1 3.0979 -3.0042 -0.0875 37 1 1.5575 -3.8926 0.0138 38 1 -0.5806 -4.5280 3.8504 39 1 -0.3977 -7.0167 3.3641 40 1 0.3275 -0.1651 2.4343 41 1 1.7666 -0.6127 3.3815 42 1 2.8977 1.4567 2.7082 43 1 1.5325 1.8899 1.6515 44 1 0.0314 1.9700 3.6235 45 1 1.3967 1.5368 4.6802 46 1 2.1184 3.8224 3.1868 47 1 2.4530 7.0222 4.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264017571.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:43 Heat of formation + Delta-G solvation = 33.281510 kcal Electronic energy + Delta-G solvation = -27530.080907 eV Core-core repulsion = 23840.511760 eV Total energy + Delta-G solvation = -3689.569147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.08860 -39.51636 -37.86522 -35.75114 -34.19777 -33.34010 -31.79158 -31.38533 -29.59184 -27.59488 -26.70577 -25.67391 -24.50181 -23.48418 -22.45472 -21.44322 -20.74469 -19.81129 -19.21827 -18.17151 -17.07830 -16.86052 -16.34569 -15.98347 -15.65614 -15.39242 -14.78755 -14.65115 -14.52451 -14.19279 -13.87025 -13.63688 -13.61508 -13.39434 -13.27359 -13.14794 -12.63588 -12.28113 -12.07776 -11.86920 -11.69487 -11.51548 -11.35991 -11.06830 -10.93823 -10.81842 -10.77145 -10.74292 -10.55937 -10.32055 -10.13902 -9.90580 -9.89353 -9.60183 -9.25943 -9.10049 -8.78119 -8.75647 -6.81311 -5.68570 -2.95920 -0.04618 0.89259 1.50276 1.89360 2.56996 2.83824 3.48562 3.54081 3.56682 4.01533 4.30075 4.51625 4.57173 4.64843 4.67302 4.71205 4.73487 4.91498 4.95514 5.11531 5.28067 5.31745 5.37438 5.47633 5.50524 5.54794 5.59013 5.64092 5.64744 5.72580 5.82268 5.94226 5.94834 6.02077 6.15550 6.19565 6.27818 6.32570 6.46251 6.49766 6.53467 6.80543 7.03890 7.08185 7.12163 7.79297 7.87930 8.51409 9.61982 10.22384 10.57199 11.54887 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017690 B = 0.002553 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.458616 B =10964.517134 C =12169.482206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.116 4.116 5 C -0.134 4.134 6 C 0.104 3.896 7 N -0.603 5.603 8 C 0.592 3.408 9 O -0.499 6.499 10 C -0.268 4.268 11 C -0.110 4.110 12 C 0.062 3.938 13 N -0.542 5.542 14 S 0.421 5.579 15 C 0.156 3.844 16 H 0.076 0.924 17 C -0.106 4.106 18 C -0.132 4.132 19 C 0.157 3.843 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.070 0.930 23 C -0.018 4.018 24 N -0.936 5.936 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.176 0.824 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.017 0.983 45 H 0.017 0.983 46 H 0.382 0.618 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -26.586 -13.398 29.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 H 0.111 0.889 4 C -0.153 4.153 5 C -0.173 4.173 6 C -0.022 4.022 7 N -0.337 5.337 8 C 0.378 3.622 9 O -0.374 6.374 10 C -0.401 4.401 11 C -0.146 4.146 12 C -0.131 4.131 13 N -0.369 5.369 14 S 0.577 5.423 15 C 0.054 3.946 16 H 0.094 0.906 17 C -0.144 4.144 18 C -0.171 4.171 19 C 0.029 3.971 20 N -0.379 5.379 21 C -0.364 4.364 22 H 0.088 0.912 23 C -0.214 4.214 24 N -0.586 5.586 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.193 0.807 39 H 0.197 0.803 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.035 0.965 45 H 0.035 0.965 46 H 0.216 0.784 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.380 -27.235 -14.275 30.752 hybrid contribution -1.251 1.119 1.886 2.525 sum -0.871 -26.116 -12.389 28.919 Atomic orbital electron populations 1.21897 0.94632 1.01605 1.02343 1.21529 0.97073 1.00258 0.93755 0.88933 1.21578 1.00631 0.94844 0.98279 1.21944 1.02077 0.96566 0.96673 1.22059 1.01057 0.93783 0.85292 1.47928 1.56518 1.11938 1.17271 1.16820 0.78771 0.84264 0.82348 1.90958 1.46142 1.61921 1.38371 1.27095 1.07715 0.99691 1.05646 1.22172 0.99710 0.92233 1.00446 1.22267 0.98967 0.95673 0.96176 1.72144 1.16627 1.32817 1.15360 1.81900 1.42255 0.87430 1.30732 1.21392 0.98813 0.77594 0.96758 0.90568 1.22115 1.02447 0.94367 0.95498 1.21909 1.00516 0.94835 0.99802 1.20571 0.96039 0.85841 0.94602 1.42407 1.55152 1.04864 1.35466 1.19320 1.20520 0.91102 1.05477 0.91194 1.24733 1.00274 0.97102 0.99261 1.69671 1.37804 1.13682 1.37418 0.86118 0.78122 0.80688 0.81340 1.20567 1.21937 1.21945 0.92970 0.91411 0.92910 0.91551 0.91242 0.90372 0.90762 0.90091 0.91003 0.80653 0.80346 0.89587 0.90526 0.92456 0.91971 0.96529 0.96533 0.78444 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.18 37.15 0.30 -1.30 16 2 C -0.11 -1.07 2.30 -90.73 -0.21 -1.28 16 3 H 0.09 1.01 6.67 -51.93 -0.35 0.66 16 4 C -0.12 -0.85 5.43 -26.69 -0.14 -0.99 16 5 C -0.13 -0.83 5.74 -26.61 -0.15 -0.99 16 6 C 0.10 0.71 5.62 -3.71 -0.02 0.69 16 7 N -0.60 -6.02 2.42 -166.86 -0.40 -6.43 16 8 C 0.59 7.05 7.52 -12.67 -0.10 6.95 16 9 O -0.50 -7.58 12.45 5.25 0.07 -7.52 16 10 C -0.27 -2.63 6.43 -35.93 -0.23 -2.86 16 11 C -0.11 -0.96 10.41 -39.77 -0.41 -1.38 16 12 C 0.06 0.49 11.15 -18.75 -0.21 0.28 16 13 N -0.54 -5.09 11.29 21.63 0.24 -4.84 16 14 S 0.42 3.27 19.18 -107.50 -2.06 1.21 16 15 C 0.16 1.74 2.70 -67.82 -0.18 1.56 16 16 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 17 C -0.11 -1.55 2.64 -26.74 -0.07 -1.62 16 18 C -0.13 -2.24 5.11 -26.74 -0.14 -2.37 16 19 C 0.16 3.43 6.26 -4.04 -0.03 3.40 16 20 N -0.74 -19.70 5.60 -59.91 -0.34 -20.04 16 21 C -0.23 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 2.02 7.83 -52.49 -0.41 1.60 16 23 C -0.02 -0.55 5.50 -17.43 -0.10 -0.64 16 24 N -0.94 -29.16 13.06 55.49 0.72 -28.44 16 25 Si 0.91 23.15 29.55 -169.99 -5.02 18.13 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 29 H 0.05 0.56 5.97 -51.93 -0.31 0.25 16 30 H 0.07 0.89 6.32 -51.93 -0.33 0.56 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.52 6.34 -51.93 -0.33 0.19 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.45 3.34 -20.32 -0.07 0.38 16 38 H 0.18 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.09 1.37 5.01 -51.93 -0.26 1.11 16 41 H 0.08 1.24 6.64 -51.93 -0.34 0.90 16 42 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 43 H 0.06 1.02 6.36 -51.93 -0.33 0.69 16 44 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.38 10.60 7.67 -40.82 -0.31 10.29 16 47 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 369.70 15.07 5.57 5.57 Total: -1.00 -34.46 369.70 -9.88 -44.34 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.83 Total: 5.57 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -1.83 Total: -7.55 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.23 Total: -59.74 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.07 Total: -7.52 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.13 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -2.06 Total: 1.21 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.46 -9.88 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264017571.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.618 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds