Wall clock time and date at job start Tue Mar 31 2020 19:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46966 * 2 1 4 4 H 1.08995 * 109.47274 * 304.99609 * 3 2 1 5 5 C 1.53001 * 109.46876 * 65.00137 * 3 2 1 6 6 C 1.53000 * 109.46961 * 184.99853 * 3 2 1 7 7 C 1.50691 * 109.47075 * 175.00192 * 6 3 2 8 8 O 1.21285 * 120.00230 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00226 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.80029 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.31048 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47202 * 90.00160 * 21 19 17 23 23 H 1.48508 * 109.47186 * 209.99953 * 21 19 17 24 24 H 1.48499 * 109.47563 * 330.00239 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79813 * 0.02647 * 9 7 6 28 28 H 1.09004 * 109.46981 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47129 * 299.99900 * 1 2 3 30 30 H 1.08999 * 109.46707 * 60.00460 * 1 2 3 31 31 H 1.08996 * 109.47129 * 240.00100 * 2 1 3 32 32 H 1.08999 * 109.46707 * 119.99540 * 2 1 3 33 33 H 1.09000 * 109.46695 * 299.99409 * 5 3 2 34 34 H 1.08995 * 109.47600 * 59.99672 * 5 3 2 35 35 H 1.09000 * 109.46932 * 180.02562 * 5 3 2 36 36 H 1.09004 * 109.47147 * 54.99719 * 6 3 2 37 37 H 1.09003 * 109.47011 * 295.00369 * 6 3 2 38 38 H 1.09000 * 109.61084 * 355.58151 * 10 9 7 39 39 H 1.08993 * 109.62093 * 235.05151 * 10 9 7 40 40 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 41 41 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 42 42 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 43 43 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 44 44 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 45 45 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 46 46 H 1.08991 * 109.82279 * 105.66759 * 27 9 7 47 47 H 1.09007 * 109.80660 * 344.76649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0570 2.8633 -0.2492 8 8 3.2660 3.7827 -0.2382 9 7 5.3761 3.1109 -0.3717 10 6 5.8756 4.4886 -0.4940 11 6 6.7307 4.8100 0.7371 12 6 7.6534 3.6465 1.0107 13 16 9.1010 3.6865 2.0101 14 6 9.3713 2.0275 1.7010 15 6 10.5223 1.2239 2.2494 16 7 11.6527 1.2932 1.3203 17 6 12.8180 0.6347 1.6094 18 1 12.9038 0.0646 2.5227 19 6 13.8890 0.6999 0.7288 20 7 13.7847 1.3951 -0.3840 21 14 15.4788 -0.1978 1.1236 22 1 15.4233 -1.5722 0.5641 23 1 16.6231 0.5348 0.5240 24 1 15.6542 -0.2697 2.5964 25 7 8.4492 1.5639 0.9324 26 6 7.5020 2.3978 0.5309 27 6 6.3504 2.0098 -0.3876 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5489 2.1252 1.3968 34 1 2.0698 1.5875 2.1492 35 1 1.9981 3.1543 1.3072 36 1 3.8571 0.8800 -1.0113 37 1 4.0029 0.9836 0.7597 38 1 5.0342 5.1796 -0.5454 39 1 6.4825 4.5794 -1.3948 40 1 6.0833 4.9727 1.5987 41 1 7.3206 5.7068 0.5476 42 1 10.8209 1.6299 3.2159 43 1 10.2150 0.1853 2.3709 44 1 11.5758 1.8056 0.5002 45 1 14.5333 1.4410 -0.9992 46 1 6.7209 1.8587 -1.4014 47 1 5.8805 1.0955 -0.0251 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264190058.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:17 Heat of formation + Delta-G solvation = 6.502364 kcal Electronic energy + Delta-G solvation = -26455.736389 eV Core-core repulsion = 22765.006011 eV Total energy + Delta-G solvation = -3690.730378 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.75589 -39.46276 -37.10889 -36.15405 -34.69249 -32.86469 -31.66024 -30.84949 -29.80378 -28.06861 -26.83624 -25.96758 -24.43077 -23.63326 -22.87812 -21.80169 -20.39829 -19.56455 -18.18902 -18.14516 -17.26291 -16.83045 -16.42081 -15.86834 -15.48511 -15.01955 -14.86364 -14.66680 -14.29925 -14.16878 -13.82162 -13.66859 -13.45442 -13.35883 -13.07217 -12.82701 -12.61582 -12.56285 -12.30026 -12.17901 -12.05892 -11.82690 -11.62482 -11.53069 -11.14448 -11.00806 -10.97831 -10.88920 -10.86079 -10.82263 -10.17589 -9.90732 -9.85709 -9.35305 -9.09952 -8.96466 -8.91429 -8.46054 -7.05941 -5.83611 -3.15247 0.86291 1.51387 1.97203 2.38612 2.64201 2.88873 3.40543 3.45461 3.47218 4.02868 4.23376 4.45180 4.54459 4.58585 4.61111 4.73973 4.83519 4.93833 5.01038 5.02141 5.17959 5.19189 5.23742 5.26417 5.38481 5.38939 5.42271 5.49129 5.49980 5.53146 5.67890 5.71278 5.75710 5.78860 5.79836 5.92299 5.96020 6.10724 6.15088 6.15846 6.25947 6.38999 6.43735 7.10318 7.61843 7.90382 7.98522 8.31948 9.44429 9.95235 10.31619 11.38636 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002297 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.083834 B =12186.030955 C =13003.916460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.075 4.075 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.141 4.141 7 C 0.523 3.477 8 O -0.537 6.537 9 N -0.614 5.614 10 C 0.115 3.885 11 C -0.052 4.052 12 C -0.237 4.237 13 S 0.136 5.864 14 C 0.076 3.924 15 C 0.224 3.776 16 N -0.723 5.723 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.912 3.088 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.280 1.280 25 N -0.464 5.464 26 C 0.046 3.954 27 C 0.193 3.807 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.054 0.946 44 H 0.387 0.613 45 H 0.257 0.743 46 H 0.092 0.908 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.883 3.522 1.226 24.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.211 4.211 6 C -0.181 4.181 7 C 0.312 3.688 8 O -0.414 6.414 9 N -0.347 5.347 10 C -0.009 4.009 11 C -0.093 4.093 12 C -0.359 4.359 13 S 0.394 5.606 14 C -0.203 4.203 15 C 0.094 3.906 16 N -0.369 5.369 17 C -0.376 4.376 18 H 0.093 0.907 19 C -0.206 4.206 20 N -0.577 5.577 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 N -0.178 5.178 26 C -0.088 4.088 27 C 0.067 3.933 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.221 0.779 45 H 0.067 0.933 46 H 0.110 0.890 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -23.583 4.122 1.799 24.008 hybrid contribution 0.581 -0.675 -0.666 1.112 sum -23.002 3.447 1.134 23.287 Atomic orbital electron populations 1.21803 0.95733 1.01463 1.02019 1.21603 0.96168 0.96024 1.02104 1.20923 0.92519 0.96104 0.99844 0.90404 1.21995 1.01154 1.02041 0.95956 1.21859 0.97898 0.93803 1.04498 1.20694 0.81060 0.91947 0.75078 1.90652 1.53883 1.46775 1.50090 1.48138 1.06075 1.07480 1.73044 1.21641 0.98595 0.83320 0.97333 1.20460 0.95488 0.94277 0.99064 1.25844 1.02197 0.99866 1.07966 1.83967 1.18599 1.12169 1.45869 1.27306 0.99341 0.95196 0.98489 1.19339 0.82579 0.95826 0.92883 1.42265 1.09761 1.61608 1.23271 1.19197 0.89756 1.24400 1.04217 0.90733 1.24783 0.98551 1.00517 0.96777 1.69677 1.31754 1.44694 1.11598 0.86124 0.82975 0.79064 0.77582 1.21559 1.21704 1.20597 1.65773 1.02777 1.37033 1.12222 1.20841 0.97495 0.88842 1.01633 1.20258 0.85627 0.89353 0.98042 0.92868 0.92427 0.92772 0.91906 0.91853 0.92713 0.93379 0.90858 0.88615 0.88629 0.87918 0.90439 0.89991 0.89241 0.93967 0.92864 0.77947 0.93341 0.88983 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.12 -0.82 5.40 -26.73 -0.14 -0.97 16 3 C -0.08 -0.62 2.04 -90.62 -0.18 -0.80 16 4 H 0.08 0.72 7.95 -51.93 -0.41 0.31 16 5 C -0.15 -1.38 8.69 37.16 0.32 -1.06 16 6 C -0.14 -1.16 3.57 -27.89 -0.10 -1.26 16 7 C 0.52 5.68 7.42 -10.99 -0.08 5.60 16 8 O -0.54 -7.19 13.39 5.55 0.07 -7.11 16 9 N -0.61 -6.54 2.92 -173.04 -0.50 -7.04 16 10 C 0.12 1.16 6.41 -3.58 -0.02 1.13 16 11 C -0.05 -0.55 6.44 -27.59 -0.18 -0.73 16 12 C -0.24 -3.25 6.43 -35.44 -0.23 -3.48 16 13 S 0.14 2.05 23.17 -107.50 -2.49 -0.44 16 14 C 0.08 1.38 6.75 -13.60 -0.09 1.29 16 15 C 0.22 4.56 6.84 -5.19 -0.04 4.52 16 16 N -0.72 -18.31 5.59 -61.09 -0.34 -18.66 16 17 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 18 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 19 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 21 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 N -0.46 -8.23 10.51 -7.27 -0.08 -8.31 16 26 C 0.05 0.67 6.87 -82.80 -0.57 0.10 16 27 C 0.19 2.14 6.65 -4.10 -0.03 2.11 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.44 6.56 -51.93 -0.34 0.10 16 34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.81 5.95 -51.93 -0.31 0.51 16 36 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.10 0.74 7.57 -51.93 -0.39 0.34 16 38 H 0.10 1.02 7.01 -51.93 -0.36 0.65 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 10.53 7.66 -40.82 -0.31 10.22 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.10 0.98 6.15 -51.93 -0.32 0.67 16 LS Contribution 387.39 15.07 5.84 5.84 Total: -1.00 -32.13 387.39 -10.44 -42.56 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.41 Total: 4.75 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.23 Total: -1.41 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: -0.20 Total: -61.19 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -2.49 Total: -0.44 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.13 -10.44 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264190058.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.065 kcal (2) G-P(sol) polarization free energy of solvation -32.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds