Wall clock time and date at job start Tue Mar 31 2020 19:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47519 * 2 1 4 4 H 1.09005 * 109.46677 * 55.00455 * 3 2 1 5 5 C 1.52997 * 109.46980 * 295.00130 * 3 2 1 6 6 C 1.53000 * 109.47176 * 175.00146 * 3 2 1 7 7 C 1.50691 * 109.47075 * 185.00386 * 6 3 2 8 8 O 1.21285 * 120.00230 * 359.97438 * 7 6 3 9 9 N 1.34780 * 120.00226 * 179.97438 * 7 6 3 10 10 C 1.47062 * 120.80029 * 179.97438 * 9 7 6 11 11 C 1.53295 * 108.60784 * 115.31048 * 10 9 7 12 12 C 1.50992 * 108.95790 * 45.06357 * 11 10 9 13 13 S 1.75959 * 126.02852 * 162.31687 * 12 11 10 14 14 C 1.70908 * 90.30364 * 179.63406 * 13 12 11 15 15 C 1.50706 * 124.92348 * 180.08570 * 14 13 12 16 16 N 1.46498 * 109.46936 * 270.00005 * 15 14 13 17 17 C 1.36937 * 119.99954 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00180 * 179.97438 * 17 16 15 20 20 N 1.31619 * 120.00178 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99941 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.47089 * 60.00272 * 21 19 17 23 23 H 1.48505 * 109.47340 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47514 * 300.00169 * 21 19 17 25 25 N 1.28677 * 110.14692 * 0.06496 * 14 13 12 26 26 C 1.32432 * 117.82620 * 0.07915 * 25 14 13 27 27 C 1.47032 * 120.79813 * 0.02647 * 9 7 6 28 28 H 1.08999 * 109.46866 * 300.00349 * 1 2 3 29 29 H 1.09002 * 109.47271 * 59.99546 * 1 2 3 30 30 H 1.08995 * 109.47576 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47129 * 239.99994 * 2 1 3 32 32 H 1.09002 * 109.47271 * 120.00454 * 2 1 3 33 33 H 1.08997 * 109.47094 * 299.99774 * 5 3 2 34 34 H 1.08998 * 109.46853 * 60.00002 * 5 3 2 35 35 H 1.09003 * 109.46841 * 179.97438 * 5 3 2 36 36 H 1.09004 * 109.47147 * 64.99913 * 6 3 2 37 37 H 1.09003 * 109.47011 * 305.00563 * 6 3 2 38 38 H 1.09000 * 109.61084 * 355.58151 * 10 9 7 39 39 H 1.08993 * 109.62093 * 235.05151 * 10 9 7 40 40 H 1.08995 * 109.56075 * 285.21909 * 11 10 9 41 41 H 1.09002 * 109.55673 * 164.90458 * 11 10 9 42 42 H 1.08997 * 109.47196 * 30.00065 * 15 14 13 43 43 H 1.08993 * 109.46898 * 150.00160 * 15 14 13 44 44 H 0.97001 * 120.00055 * 0.02562 * 16 15 14 45 45 H 0.97002 * 120.00370 * 179.97438 * 20 19 17 46 46 H 1.08991 * 109.82279 * 105.66759 * 27 9 7 47 47 H 1.09007 * 109.80660 * 344.76649 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4442 0.1257 7 6 4.0571 2.8631 0.2493 8 8 3.2662 3.7826 0.2375 9 7 5.3762 3.1105 0.3729 10 6 5.8758 4.4884 0.4942 11 6 6.5157 4.6567 1.8770 12 6 7.3924 3.4606 2.1608 13 16 8.6573 3.3707 3.3807 14 6 8.9900 1.7561 2.9297 15 6 10.0437 0.8835 3.5617 16 7 11.3099 1.0491 2.8436 17 6 12.4186 0.3503 3.2407 18 1 12.3597 -0.3225 4.0834 19 6 13.6182 0.5068 2.5600 20 7 13.6901 1.3272 1.5332 21 14 15.1308 -0.4458 3.1021 22 1 14.8560 -1.9026 3.0145 23 1 16.2741 -0.1043 2.2180 24 1 15.4647 -0.0885 4.5043 25 7 8.2100 1.3936 1.9726 26 6 7.3331 2.2774 1.5214 27 6 6.3504 2.0094 0.3887 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0699 1.5875 -2.1491 34 1 0.5490 2.1253 -1.3968 35 1 1.9984 3.1543 -1.3071 36 1 4.0030 0.9834 -0.7597 37 1 3.8571 0.8798 1.0112 38 1 5.0475 5.1887 0.3866 39 1 6.6206 4.6770 -0.2790 40 1 5.7349 4.7248 2.6345 41 1 7.1201 5.5637 1.8914 42 1 10.1769 1.1719 4.6043 43 1 9.7306 -0.1592 3.5103 44 1 11.3628 1.6537 2.0869 45 1 14.5285 1.4368 1.0578 46 1 6.8827 1.9732 -0.5617 47 1 5.8364 1.0638 0.5614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264190059.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:19 Heat of formation + Delta-G solvation = -12.607921 kcal Electronic energy + Delta-G solvation = -26417.585990 eV Core-core repulsion = 22726.026928 eV Total energy + Delta-G solvation = -3691.559062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70419 -40.53407 -37.97642 -37.05096 -36.41946 -33.88585 -33.36202 -31.54629 -31.08686 -28.78975 -28.42288 -26.88100 -25.40141 -25.09682 -23.90227 -23.16709 -21.13626 -20.48693 -19.57102 -19.15152 -18.92450 -17.78013 -17.30405 -16.88843 -16.79540 -16.19977 -15.86293 -15.78190 -15.39584 -15.14755 -15.06960 -14.90764 -14.75954 -14.28724 -14.04350 -13.90621 -13.80878 -13.65406 -13.32383 -13.08603 -12.97142 -12.79090 -12.74365 -12.67885 -12.45833 -12.19022 -12.17495 -12.12774 -11.88687 -11.72025 -11.52555 -11.38854 -11.02189 -10.75956 -10.60129 -10.23042 -9.85657 -9.63185 -9.10116 -7.96934 -5.29235 -0.36809 0.31673 0.74618 1.49171 1.52925 1.55176 1.58489 1.65910 1.82110 2.56120 2.94315 3.37507 3.43933 3.68318 3.79321 3.82768 3.89031 3.98519 4.06812 4.14687 4.21745 4.28175 4.32531 4.45040 4.49242 4.54780 4.62446 4.67970 4.72785 4.74658 4.77232 4.83340 4.85316 4.86523 4.92759 5.14373 5.16149 5.19029 5.24454 5.30713 5.32687 5.47337 5.53641 5.60421 6.21024 6.26221 6.73130 7.08836 7.28892 7.94836 8.22025 9.26097 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.017903 B = 0.002277 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.623492 B =12296.262802 C =13099.211321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.073 4.073 4 H 0.059 0.941 5 C -0.150 4.150 6 C -0.139 4.139 7 C 0.521 3.479 8 O -0.565 6.565 9 N -0.613 5.613 10 C 0.114 3.886 11 C -0.050 4.050 12 C -0.225 4.225 13 S 0.159 5.841 14 C 0.038 3.962 15 C 0.227 3.773 16 N -0.736 5.736 17 C -0.249 4.249 18 H 0.085 0.915 19 C -0.073 4.073 20 N -0.969 5.969 21 Si 0.980 3.020 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.274 1.274 25 N -0.479 5.479 26 C 0.027 3.973 27 C 0.198 3.802 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.373 0.627 45 H 0.252 0.748 46 H 0.101 0.899 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.664 3.188 -2.612 25.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.092 4.092 4 H 0.078 0.922 5 C -0.207 4.207 6 C -0.178 4.178 7 C 0.312 3.688 8 O -0.444 6.444 9 N -0.346 5.346 10 C -0.010 4.010 11 C -0.090 4.090 12 C -0.347 4.347 13 S 0.417 5.583 14 C -0.240 4.240 15 C 0.098 3.902 16 N -0.380 5.380 17 C -0.381 4.381 18 H 0.103 0.897 19 C -0.265 4.265 20 N -0.619 5.619 21 Si 0.808 3.192 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.200 1.200 25 N -0.194 5.194 26 C -0.106 4.106 27 C 0.072 3.928 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.127 0.873 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.205 0.795 45 H 0.061 0.939 46 H 0.119 0.881 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -24.490 3.686 -1.909 24.839 hybrid contribution 0.827 -0.384 -0.629 1.107 sum -23.663 3.302 -2.537 24.027 Atomic orbital electron populations 1.21811 0.95580 1.01915 1.01821 1.21577 0.96307 0.94944 1.02701 1.20882 0.92571 0.96810 0.98896 0.92234 1.21939 1.01467 1.00792 0.96529 1.21920 0.97842 0.92252 1.05803 1.21139 0.80667 0.92694 0.74332 1.90648 1.54355 1.47860 1.51529 1.48190 1.06166 1.07540 1.72716 1.21704 0.99906 0.83397 0.95989 1.20604 0.96721 0.93298 0.98405 1.26327 1.03779 1.01627 1.02963 1.83779 1.28465 1.11675 1.34394 1.26851 1.00951 0.97992 0.98215 1.19296 0.81640 0.95383 0.93899 1.42418 1.05584 1.52913 1.37067 1.19610 0.88458 1.18647 1.11343 0.89736 1.25649 1.01134 1.01320 0.98407 1.69833 1.26567 1.41760 1.23726 0.85123 0.78372 0.78287 0.77391 1.20251 1.22290 1.19964 1.65735 1.06025 1.36408 1.11281 1.21333 0.98895 0.89095 1.01294 1.20351 0.87481 0.90730 0.94193 0.93226 0.92427 0.92084 0.90986 0.91530 0.92372 0.92321 0.93091 0.86699 0.87621 0.87666 0.89582 0.89306 0.87327 0.92620 0.93244 0.79523 0.93886 0.88093 0.86034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 71.98 0.70 -1.07 16 2 C -0.12 -1.38 5.40 30.59 0.17 -1.22 16 3 C -0.07 -1.10 2.04 -10.79 -0.02 -1.12 16 4 H 0.06 1.11 7.96 -2.38 -0.02 1.09 16 5 C -0.15 -2.41 8.69 71.98 0.63 -1.79 16 6 C -0.14 -2.00 3.57 29.85 0.11 -1.89 16 7 C 0.52 10.53 7.42 87.65 0.65 11.18 16 8 O -0.56 -14.69 13.39 -3.05 -0.04 -14.73 16 9 N -0.61 -11.89 2.92 -819.76 -2.39 -14.28 16 10 C 0.11 2.06 6.41 86.37 0.55 2.62 16 11 C -0.05 -0.94 6.44 30.04 0.19 -0.74 16 12 C -0.23 -5.82 6.43 24.95 0.16 -5.66 16 13 S 0.16 4.66 23.17 -56.49 -1.31 3.36 16 14 C 0.04 1.37 6.75 88.57 0.60 1.97 16 15 C 0.23 9.27 6.84 85.64 0.59 9.85 16 16 N -0.74 -37.72 5.59 -347.19 -1.94 -39.67 16 17 C -0.25 -13.72 9.99 84.03 0.84 -12.88 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 20 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 21 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 N -0.48 -16.77 10.51 -176.92 -1.86 -18.63 16 26 C 0.03 0.75 6.87 42.16 0.29 1.04 16 27 C 0.20 3.99 6.65 86.05 0.57 4.56 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.65 6.57 -2.39 -0.02 0.63 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.87 6.56 -2.39 -0.02 0.85 16 35 H 0.05 1.07 5.95 -2.39 -0.01 1.05 16 36 H 0.11 1.24 8.09 -2.38 -0.02 1.22 16 37 H 0.11 1.34 7.57 -2.39 -0.02 1.32 16 38 H 0.11 1.91 7.01 -2.39 -0.02 1.89 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.37 20.80 7.66 -92.71 -0.71 20.09 16 45 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 46 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.12 2.01 6.15 -2.38 -0.01 1.99 16 Total: -1.00 -69.24 387.39 1.52 -67.73 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: 0.27 Total: 26.50 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 6.48 Total: 1.20 kcal Atomic # 7 Polarization: -125.55 SS G_CDS: -5.91 Total: -131.46 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.04 Total: -14.73 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Atomic # 16 Polarization: 4.66 SS G_CDS: -1.31 Total: 3.36 kcal Total: -69.24 1.52 -67.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264190059.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.118 kcal (2) G-P(sol) polarization free energy of solvation -69.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds