Wall clock time and date at job start Tue Mar 31 2020 21:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.52614 * 2 1 4 4 C 1.53036 * 109.49939 * 120.08391 * 2 1 3 5 5 C 1.53044 * 109.54052 * 181.31413 * 4 2 1 6 6 C 1.53193 * 109.30930 * 298.63222 * 5 4 2 7 7 N 1.46931 * 108.77430 * 54.63497 * 6 5 4 8 8 C 1.34776 * 120.62964 * 126.36701 * 7 6 5 9 9 O 1.21281 * 120.00102 * 183.36562 * 8 7 6 10 10 C 1.50700 * 120.00108 * 3.36055 * 8 7 6 11 11 C 1.50703 * 109.47160 * 179.97438 * 10 8 7 12 12 C 1.33642 * 126.03460 * 90.00017 * 11 10 8 13 13 N 1.31777 * 114.49597 * 179.97438 * 12 11 10 14 14 C 1.29029 * 117.13176 * 0.02562 * 13 12 11 15 15 S 1.70980 * 110.16030 * 359.72332 * 14 13 12 16 16 C 1.46923 * 118.73847 * 306.38614 * 7 6 5 17 17 H 1.09000 * 109.59036 * 293.68340 * 16 7 6 18 18 C 1.52998 * 109.58518 * 173.39654 * 16 7 6 19 19 C 1.52999 * 109.47268 * 291.78240 * 18 16 7 20 20 N 1.46503 * 109.47105 * 173.66247 * 19 18 16 21 21 C 1.36938 * 119.99821 * 180.02562 * 20 19 18 22 22 H 1.07995 * 120.00097 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99686 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99585 * 179.97438 * 23 21 20 25 25 Si 1.86793 * 120.00174 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47513 * 270.00322 * 25 23 21 27 27 H 1.48503 * 109.47394 * 30.00526 * 25 23 21 28 28 H 1.48503 * 109.47240 * 150.00001 * 25 23 21 29 29 H 1.09001 * 109.46960 * 180.08608 * 1 2 3 30 30 H 1.09002 * 109.46714 * 300.07737 * 1 2 3 31 31 H 1.09000 * 109.47355 * 60.07825 * 1 2 3 32 32 H 1.08999 * 109.46295 * 61.29276 * 4 2 1 33 33 H 1.09004 * 109.45088 * 301.32776 * 4 2 1 34 34 H 1.08992 * 109.49676 * 178.68358 * 5 4 2 35 35 H 1.08995 * 109.49315 * 58.58289 * 5 4 2 36 36 H 1.08999 * 109.58918 * 294.84556 * 6 5 4 37 37 H 1.09000 * 109.70102 * 174.48444 * 6 5 4 38 38 H 1.08998 * 109.47254 * 300.00097 * 10 8 7 39 39 H 1.08998 * 109.47256 * 59.99746 * 10 8 7 40 40 H 1.07994 * 122.74969 * 0.02562 * 12 11 10 41 41 H 1.07990 * 124.92290 * 179.97438 * 14 13 12 42 42 H 1.09002 * 109.47042 * 171.78311 * 18 16 7 43 43 H 1.08998 * 109.47374 * 51.78542 * 18 16 7 44 44 H 1.08992 * 109.47398 * 53.65918 * 19 18 16 45 45 H 1.09000 * 109.47346 * 293.65888 * 19 18 16 46 46 H 0.97001 * 120.00267 * 359.97438 * 20 19 18 47 47 H 0.97001 * 119.99690 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8944 1.0273 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5710 -0.6951 1.2659 6 6 4.1053 -1.4268 0.0306 7 7 3.5045 -0.8292 -1.1697 8 6 4.2811 -0.3857 -2.1780 9 8 3.7771 0.1609 -3.1363 10 6 5.7756 -0.5688 -2.1148 11 6 6.4054 0.0092 -3.3559 12 6 6.8302 1.2670 -3.5092 13 7 7.3469 1.5288 -4.6929 14 6 7.3811 0.5621 -5.5469 15 16 6.7185 -0.8559 -4.8586 16 6 2.0413 -0.7239 -1.2496 17 1 1.6053 -1.7216 -1.3006 18 6 1.6517 0.0704 -2.4979 19 6 2.0821 1.5289 -2.3293 20 7 1.8472 2.2551 -3.5798 21 6 2.1591 3.5856 -3.6678 22 1 2.5778 4.0997 -2.8153 23 6 1.9360 4.2738 -4.8525 24 7 2.2352 5.5527 -4.9370 25 14 1.2111 3.3848 -6.3268 26 1 2.3081 2.8188 -7.1521 27 1 0.3276 2.2872 -5.8578 28 1 0.4210 4.3417 -7.1426 29 1 -0.3633 -1.0277 0.0015 30 1 -0.3633 0.5151 0.8893 31 1 -0.3634 0.5126 -0.8907 32 1 1.6968 -1.7573 1.2352 33 1 1.6583 -0.2243 2.1388 34 1 3.9335 -1.1898 2.1669 35 1 3.9160 0.3387 1.2540 36 1 3.8375 -2.4820 0.0866 37 1 5.1897 -1.3269 -0.0152 38 1 6.1675 -0.0569 -1.2359 39 1 6.0090 -1.6315 -2.0505 40 1 6.7569 2.0078 -2.7269 41 1 7.7752 0.6366 -6.5495 42 1 0.5714 0.0241 -2.6356 43 1 2.1477 -0.3563 -3.3696 44 1 3.1424 1.5683 -2.0799 45 1 1.5032 1.9884 -1.5281 46 1 1.4715 1.7933 -4.3456 47 1 2.0797 6.0335 -5.7649 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264511225.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:57 Heat of formation + Delta-G solvation = 56.292057 kcal Electronic energy + Delta-G solvation = -28704.260737 eV Core-core repulsion = 25015.689402 eV Total energy + Delta-G solvation = -3688.571335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.90089 -39.38463 -37.62932 -35.41967 -33.77915 -32.89076 -32.38424 -30.99674 -28.96339 -27.58636 -26.51389 -25.32173 -24.22026 -23.19900 -21.76408 -21.32499 -20.44978 -19.73270 -18.81506 -17.85539 -17.33134 -16.89225 -16.08805 -15.64178 -15.17597 -14.92403 -14.69709 -14.38333 -14.10292 -13.88407 -13.70607 -13.64860 -13.42232 -13.23654 -12.83583 -12.79983 -12.68401 -12.42815 -12.26975 -12.01329 -11.77208 -11.38883 -11.30144 -11.18735 -10.93512 -10.84687 -10.65876 -10.45811 -10.31759 -10.15719 -9.84955 -9.48405 -9.39453 -9.17754 -8.86589 -8.70381 -8.54865 -8.29668 -6.88172 -5.56059 -2.85802 0.83044 1.49106 1.85462 2.79377 2.91693 3.17417 3.52566 3.57512 3.58827 4.44269 4.47128 4.59418 4.70481 4.75543 4.79521 4.80335 4.90913 4.97139 5.12899 5.17382 5.30892 5.35819 5.41623 5.43613 5.55278 5.58226 5.64236 5.71802 5.73737 5.81226 5.82872 5.95391 5.98076 6.07867 6.18538 6.28710 6.31503 6.33777 6.43835 6.55068 6.68594 7.10516 7.21757 7.51188 7.89469 8.22111 8.43730 8.64893 9.46762 10.21021 10.43544 11.63624 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.007300 B = 0.006324 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3834.594070 B = 4426.812398 C = 7395.620897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 H 0.086 0.914 4 C -0.113 4.113 5 C -0.136 4.136 6 C 0.109 3.891 7 N -0.612 5.612 8 C 0.494 3.506 9 O -0.469 6.469 10 C -0.060 4.060 11 C -0.199 4.199 12 C 0.058 3.942 13 N -0.463 5.463 14 C 0.020 3.980 15 S 0.113 5.887 16 C 0.163 3.837 17 H 0.066 0.934 18 C -0.137 4.137 19 C 0.180 3.820 20 N -0.747 5.747 21 C -0.224 4.224 22 H 0.084 0.916 23 C -0.002 4.002 24 N -0.942 5.942 25 Si 0.885 3.115 26 H -0.287 1.287 27 H -0.279 1.279 28 H -0.295 1.295 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.173 0.827 41 H 0.196 0.804 42 H 0.050 0.950 43 H 0.102 0.898 44 H 0.033 0.967 45 H 0.005 0.995 46 H 0.358 0.642 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.446 -21.559 12.139 25.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 H 0.105 0.895 4 C -0.151 4.151 5 C -0.175 4.175 6 C -0.014 4.014 7 N -0.348 5.348 8 C 0.280 3.720 9 O -0.342 6.342 10 C -0.102 4.102 11 C -0.321 4.321 12 C -0.094 4.094 13 N -0.176 5.176 14 C -0.278 4.278 15 S 0.364 5.636 16 C 0.060 3.940 17 H 0.084 0.916 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.391 5.391 21 C -0.355 4.355 22 H 0.102 0.898 23 C -0.196 4.196 24 N -0.591 5.591 25 Si 0.717 3.283 26 H -0.214 1.214 27 H -0.205 1.205 28 H -0.221 1.221 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.190 0.810 41 H 0.212 0.788 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.023 0.977 46 H 0.190 0.810 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.341 -21.502 11.090 25.282 hybrid contribution -0.622 0.214 -0.419 0.780 sum 6.719 -21.287 10.670 24.742 Atomic orbital electron populations 1.21790 0.94483 1.01427 1.02555 1.21672 0.96184 1.01094 0.93958 0.89541 1.21582 0.94881 1.00559 0.98068 1.21924 0.96599 1.01625 0.97311 1.21697 0.98099 0.96959 0.84685 1.48001 1.06559 1.62182 1.18026 1.20363 0.88332 0.79667 0.83646 1.90975 1.72697 1.37674 1.32806 1.20078 0.93033 1.02315 0.94805 1.25196 1.09505 0.98093 0.99281 1.21680 0.98277 0.94540 0.94857 1.66268 1.17375 1.31942 1.01984 1.28308 1.03958 0.91502 1.03993 1.83711 1.55957 1.16900 1.06986 1.21254 0.78459 0.98356 0.95936 0.91636 1.22453 0.99583 0.97791 0.97575 1.20717 0.97305 0.88210 0.88440 1.42561 1.77397 1.08305 1.10817 1.19033 1.33570 0.84262 0.98591 0.89830 1.24603 1.02042 0.95614 0.97388 1.69708 1.55127 1.07725 1.26574 0.86509 0.79009 0.78713 0.84109 1.21415 1.20550 1.22143 0.93058 0.92629 0.91590 0.92115 0.91775 0.90939 0.91194 0.91595 0.89971 0.87291 0.88278 0.80986 0.78750 0.93121 0.88034 0.94971 0.97735 0.81042 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.97 37.16 0.33 -1.28 16 2 C -0.11 -1.28 1.92 -90.50 -0.17 -1.45 16 3 H 0.09 1.24 6.14 -51.93 -0.32 0.92 16 4 C -0.11 -0.97 5.17 -26.69 -0.14 -1.11 16 5 C -0.14 -1.02 6.08 -26.61 -0.16 -1.18 16 6 C 0.11 0.82 6.34 -3.71 -0.02 0.79 16 7 N -0.61 -7.05 2.93 -165.22 -0.48 -7.53 16 8 C 0.49 6.91 6.59 -10.99 -0.07 6.84 16 9 O -0.47 -8.91 9.48 5.56 0.05 -8.86 16 10 C -0.06 -0.63 4.61 -29.03 -0.13 -0.77 16 11 C -0.20 -2.73 5.09 -35.92 -0.18 -2.92 16 12 C 0.06 0.93 11.25 -19.19 -0.22 0.71 16 13 N -0.46 -7.98 10.54 -15.75 -0.17 -8.14 16 14 C 0.02 0.28 12.23 51.59 0.63 0.91 16 15 S 0.11 1.40 23.22 -107.50 -2.50 -1.09 16 16 C 0.16 2.07 2.67 -67.60 -0.18 1.89 16 17 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 18 C -0.14 -2.35 4.16 -26.73 -0.11 -2.46 16 19 C 0.18 3.87 4.23 -4.04 -0.02 3.85 16 20 N -0.75 -19.86 5.34 -59.91 -0.32 -20.18 16 21 C -0.22 -6.94 10.47 -15.06 -0.16 -7.10 16 22 H 0.08 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 -0.06 5.50 -17.43 -0.10 -0.16 16 24 N -0.94 -31.72 13.97 55.49 0.78 -30.95 16 25 Si 0.89 24.47 27.73 -169.99 -4.71 19.75 16 26 H -0.29 -8.01 7.11 56.52 0.40 -7.61 16 27 H -0.28 -7.31 6.52 56.52 0.37 -6.94 16 28 H -0.29 -8.11 7.11 56.52 0.40 -7.71 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.87 6.81 -51.93 -0.35 0.52 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.46 5.95 -51.93 -0.31 0.16 16 38 H 0.11 0.91 7.55 -51.93 -0.39 0.52 16 39 H 0.10 0.77 8.06 -51.93 -0.42 0.35 16 40 H 0.17 2.64 8.06 -52.49 -0.42 2.22 16 41 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 42 H 0.05 0.85 7.05 -51.93 -0.37 0.49 16 43 H 0.10 1.95 5.70 -53.32 -0.30 1.64 16 44 H 0.03 0.74 5.37 -51.93 -0.28 0.46 16 45 H 0.01 0.11 6.61 -51.93 -0.34 -0.23 16 46 H 0.36 9.54 5.53 -40.82 -0.23 9.32 16 47 H 0.26 8.22 8.31 -40.82 -0.34 7.88 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -38.43 371.62 -9.58 -48.02 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -7.13 Total: 6.81 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -0.70 Total: -3.43 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -0.20 Total: -66.80 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.05 Total: -8.86 kcal Atomic # 14 Polarization: 24.47 SS G_CDS: -4.71 Total: 19.75 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.50 Total: -1.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -38.43 -9.58 -48.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511225.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.308 kcal (2) G-P(sol) polarization free energy of solvation -38.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds