Wall clock time and date at job start Tue Mar 31 2020 21:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.52675 * 2 1 4 4 C 1.53037 * 109.49802 * 120.08960 * 2 1 3 5 5 C 1.53036 * 109.54112 * 58.58520 * 4 2 1 6 6 C 1.53194 * 109.31434 * 61.36072 * 5 4 2 7 7 N 1.46920 * 108.77826 * 305.36738 * 6 5 4 8 8 C 1.34774 * 120.63544 * 233.62800 * 7 6 5 9 9 O 1.21277 * 120.00380 * 185.47829 * 8 7 6 10 10 C 1.50709 * 119.99418 * 5.47811 * 8 7 6 11 11 C 1.50704 * 109.46605 * 180.02562 * 10 8 7 12 12 C 1.33631 * 126.03747 * 89.71574 * 11 10 8 13 13 N 1.31790 * 114.49709 * 179.78586 * 12 11 10 14 14 C 1.29022 * 117.12450 * 0.51613 * 13 12 11 15 15 S 1.70976 * 110.16519 * 359.71834 * 14 13 12 16 16 C 1.46930 * 118.73726 * 53.60744 * 7 6 5 17 17 H 1.09001 * 109.58903 * 66.32031 * 16 7 6 18 18 C 1.52996 * 109.58697 * 186.60274 * 16 7 6 19 19 C 1.53001 * 109.47346 * 178.29827 * 18 16 7 20 20 N 1.46502 * 109.47483 * 184.85469 * 19 18 16 21 21 C 1.36935 * 120.00052 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00000 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99801 * 179.97438 * 21 20 19 24 24 N 1.31619 * 119.99858 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00003 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47237 * 89.99871 * 25 23 21 27 27 H 1.48504 * 109.46914 * 209.99992 * 25 23 21 28 28 H 1.48507 * 109.47075 * 329.99792 * 25 23 21 29 29 H 1.09000 * 109.47494 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46680 * 300.07510 * 1 2 3 31 31 H 1.08994 * 109.47562 * 60.07363 * 1 2 3 32 32 H 1.08995 * 109.46056 * 298.56165 * 4 2 1 33 33 H 1.09000 * 109.44502 * 178.59826 * 4 2 1 34 34 H 1.08999 * 109.49732 * 301.41244 * 5 4 2 35 35 H 1.09003 * 109.50265 * 181.31778 * 5 4 2 36 36 H 1.09001 * 109.58635 * 185.58046 * 6 5 4 37 37 H 1.09004 * 109.58161 * 65.16074 * 6 5 4 38 38 H 1.08998 * 109.46962 * 299.99682 * 10 8 7 39 39 H 1.08992 * 109.47166 * 59.99821 * 10 8 7 40 40 H 1.08000 * 122.75490 * 359.97186 * 12 11 10 41 41 H 1.08001 * 124.91720 * 179.74970 * 14 13 12 42 42 H 1.09000 * 109.47529 * 298.30140 * 18 16 7 43 43 H 1.09001 * 109.47136 * 58.30249 * 18 16 7 44 44 H 1.09000 * 109.46908 * 304.85624 * 19 18 16 45 45 H 1.09001 * 109.47200 * 64.85224 * 19 18 16 46 46 H 0.96996 * 119.99723 * 359.97438 * 20 19 18 47 47 H 0.96997 * 119.99617 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7233 1.2482 5 6 1.5030 -2.1559 1.2657 6 6 2.0139 -2.9040 0.0303 7 7 1.6514 -2.1381 -1.1699 8 6 0.9738 -2.7216 -2.1783 9 8 0.7671 -2.1090 -3.2043 10 6 0.4731 -4.1353 -2.0307 11 6 -0.2456 -4.5476 -3.2896 12 6 0.3093 -5.1294 -4.3570 13 7 -0.5341 -5.3971 -5.3336 14 6 -1.7675 -5.0642 -5.1535 15 16 -1.9644 -4.3407 -3.6170 16 6 2.0412 -0.7237 -1.2497 17 1 3.1273 -0.6463 -1.3008 18 6 1.4228 -0.0910 -2.4979 19 6 1.7954 1.3919 -2.5560 20 7 1.1097 2.0239 -3.6859 21 6 1.2913 3.3575 -3.9380 22 1 1.9398 3.9435 -3.3036 23 6 0.6420 3.9561 -5.0089 24 7 0.8170 5.2379 -5.2515 25 14 -0.4801 2.9426 -6.1057 26 1 -1.8635 2.9793 -5.5673 27 1 -0.4688 3.5051 -7.4801 28 1 0.0000 1.5378 -6.1419 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3634 0.5126 -0.8906 32 1 1.6988 -0.1961 2.1388 33 1 3.1305 -0.7446 1.2348 34 1 0.4133 -2.1356 1.2539 35 1 1.8481 -2.6631 2.1668 36 1 1.5552 -3.8918 -0.0142 37 1 3.0979 -3.0044 0.0863 38 1 1.3169 -4.8036 -1.8591 39 1 -0.2127 -4.1915 -1.1854 40 1 1.3620 -5.3639 -4.4134 41 1 -2.5609 -5.2204 -5.8695 42 1 1.8012 -0.5957 -3.3868 43 1 0.3382 -0.1917 -2.4570 44 1 1.4930 1.8790 -1.6290 45 1 2.8733 1.4909 -2.6837 46 1 0.5270 1.4976 -4.2554 47 1 0.3636 5.6561 -6.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264511226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:58 Heat of formation + Delta-G solvation = 13.284890 kcal Electronic energy + Delta-G solvation = -28001.887800 eV Core-core repulsion = 24311.451534 eV Total energy + Delta-G solvation = -3690.436266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 337.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.87264 -40.51920 -38.82803 -37.17890 -35.14408 -34.14556 -33.60042 -32.81615 -30.17230 -28.96188 -27.69661 -26.46078 -25.45721 -24.92579 -23.69887 -22.19369 -21.55184 -20.80434 -19.75576 -19.32075 -18.97495 -17.83720 -17.24689 -16.74678 -16.55742 -16.28897 -16.16726 -15.67050 -15.34284 -15.17885 -15.09905 -14.85687 -14.82195 -14.59312 -14.26282 -14.06777 -13.90641 -13.75111 -13.30957 -13.27728 -13.00590 -12.99220 -12.52150 -12.41086 -12.28694 -12.15474 -12.10501 -11.88964 -11.79965 -11.71088 -11.31511 -11.22815 -10.98057 -10.64511 -10.33638 -10.02311 -9.77560 -9.47953 -9.32095 -8.08648 -5.40445 -0.26539 0.44822 0.79502 1.31151 1.32663 1.41474 1.66790 1.80556 2.11163 2.41911 3.22660 3.41618 3.42870 3.67688 3.75699 3.89416 3.93170 3.97736 4.12604 4.15475 4.25253 4.36326 4.38096 4.42595 4.50254 4.57680 4.60788 4.69765 4.74898 4.79233 4.82405 4.85493 4.93902 5.01758 5.14848 5.18454 5.23391 5.27865 5.33598 5.40901 5.46887 5.57813 5.69590 5.76440 6.16977 6.51435 6.73817 7.02152 7.28304 7.80529 7.99346 9.13127 Molecular weight = 337.16amu Principal moments of inertia in cm(-1) A = 0.008313 B = 0.004489 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3367.330042 B = 6236.617582 C = 8934.564961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.104 4.104 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.099 3.901 7 N -0.601 5.601 8 C 0.503 3.497 9 O -0.565 6.565 10 C -0.056 4.056 11 C -0.204 4.204 12 C 0.024 3.976 13 N -0.505 5.505 14 C 0.009 3.991 15 S 0.141 5.859 16 C 0.163 3.837 17 H 0.076 0.924 18 C -0.100 4.100 19 C 0.149 3.851 20 N -0.760 5.760 21 C -0.234 4.234 22 H 0.061 0.939 23 C -0.057 4.057 24 N -0.980 5.980 25 Si 0.949 3.051 26 H -0.276 1.276 27 H -0.288 1.288 28 H -0.268 1.268 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.148 0.852 39 H 0.133 0.867 40 H 0.182 0.818 41 H 0.222 0.778 42 H 0.066 0.934 43 H 0.057 0.943 44 H 0.031 0.969 45 H 0.016 0.984 46 H 0.361 0.639 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -29.107 17.456 33.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 H 0.089 0.911 4 C -0.148 4.148 5 C -0.171 4.171 6 C -0.022 4.022 7 N -0.335 5.335 8 C 0.292 3.708 9 O -0.444 6.444 10 C -0.098 4.098 11 C -0.326 4.326 12 C -0.126 4.126 13 N -0.219 5.219 14 C -0.288 4.288 15 S 0.394 5.606 16 C 0.059 3.941 17 H 0.094 0.906 18 C -0.138 4.138 19 C 0.022 3.978 20 N -0.405 5.405 21 C -0.365 4.365 22 H 0.079 0.921 23 C -0.249 4.249 24 N -0.631 5.631 25 Si 0.777 3.223 26 H -0.202 1.202 27 H -0.215 1.215 28 H -0.193 1.193 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.048 0.952 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.150 0.850 40 H 0.199 0.801 41 H 0.238 0.762 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.034 0.966 46 H 0.193 0.807 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.401 -28.460 16.969 33.222 hybrid contribution 0.230 0.287 -1.472 1.517 sum -2.171 -28.173 15.497 32.227 Atomic orbital electron populations 1.21816 0.95398 1.01708 1.00891 1.21546 0.96295 0.99546 0.94959 0.91119 1.21537 1.00965 0.96211 0.96107 1.21973 1.01547 0.95244 0.98360 1.22152 1.01863 0.95632 0.82552 1.48178 1.55752 1.10492 1.19032 1.21066 0.77748 0.89154 0.82867 1.90844 1.58076 1.65058 1.30389 1.20250 1.02207 0.93226 0.94127 1.25597 0.96754 1.07764 1.02470 1.21925 1.01297 1.01123 0.88284 1.66311 1.02696 1.21641 1.31206 1.28809 0.97820 1.01241 1.00910 1.83936 1.06765 1.55501 1.14373 1.21058 0.98397 0.80329 0.94293 0.90603 1.22052 1.00833 0.92580 0.98336 1.21005 0.94408 0.93070 0.89299 1.42793 1.56543 1.06865 1.34321 1.19093 1.22264 0.85459 1.09666 0.92135 1.25382 1.02374 0.96763 1.00390 1.69858 1.49005 1.11450 1.32778 0.85496 0.79573 0.78672 0.78584 1.20162 1.21460 1.19343 0.91829 0.92028 0.95236 0.90973 0.90983 0.91388 0.88013 0.86709 0.89640 0.83413 0.84953 0.80084 0.76164 0.91534 0.92481 0.95105 0.96614 0.80656 0.93189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.20 71.98 0.59 -2.69 16 2 C -0.10 -2.23 2.26 -10.71 -0.02 -2.25 16 3 H 0.07 1.77 6.64 -2.39 -0.02 1.76 16 4 C -0.11 -1.44 5.43 30.62 0.17 -1.27 16 5 C -0.13 -1.05 5.74 30.67 0.18 -0.88 16 6 C 0.10 0.79 6.35 86.36 0.55 1.33 16 7 N -0.60 -10.82 2.41 -795.01 -1.92 -12.74 16 8 C 0.50 11.03 7.53 87.66 0.66 11.69 16 9 O -0.56 -18.87 11.59 -3.02 -0.03 -18.90 16 10 C -0.06 -0.72 4.59 29.11 0.13 -0.58 16 11 C -0.20 -3.93 5.09 24.64 0.13 -3.81 16 12 C 0.02 0.54 11.25 83.65 0.94 1.48 16 13 N -0.50 -12.63 10.54 -203.75 -2.15 -14.78 16 14 C 0.01 0.18 12.23 130.66 1.60 1.77 16 15 S 0.14 2.68 23.22 -56.49 -1.31 1.36 16 16 C 0.16 3.98 2.74 44.97 0.12 4.11 16 17 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 18 C -0.10 -3.54 2.76 30.59 0.08 -3.46 16 19 C 0.15 6.34 5.99 86.38 0.52 6.85 16 20 N -0.76 -40.37 5.41 -343.44 -1.86 -42.23 16 21 C -0.23 -14.46 10.47 84.03 0.88 -13.58 16 22 H 0.06 4.00 8.06 -2.91 -0.02 3.98 16 23 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 24 N -0.98 -65.62 13.97 21.65 0.30 -65.32 16 25 Si 0.95 50.00 27.74 68.60 1.90 51.91 16 26 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 27 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 28 H -0.27 -13.68 6.52 99.48 0.65 -13.04 16 29 H 0.06 1.29 5.97 -2.39 -0.01 1.28 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 0.90 6.35 -2.39 -0.02 0.88 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.63 6.33 -2.39 -0.02 0.62 16 35 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.11 0.21 5.93 -2.39 -0.01 0.20 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.15 0.83 7.72 -2.39 -0.02 0.81 16 39 H 0.13 0.96 7.91 -2.39 -0.02 0.95 16 40 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.22 2.96 8.06 -2.91 -0.02 2.94 16 42 H 0.07 2.71 6.23 -2.39 -0.01 2.69 16 43 H 0.06 2.20 5.52 -2.39 -0.01 2.19 16 44 H 0.03 1.29 6.29 -2.39 -0.02 1.28 16 45 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.36 19.16 5.53 -92.71 -0.51 18.65 16 47 H 0.26 16.45 8.31 -92.71 -0.77 15.68 16 Total: -1.00 -84.64 371.62 2.34 -82.30 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.42 Total: 22.82 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 6.99 Total: -4.42 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -5.62 Total: -135.07 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.03 Total: -18.90 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.90 Total: 51.91 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -1.31 Total: 1.36 kcal Total: -84.64 2.34 -82.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264511226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.585 kcal (2) G-P(sol) polarization free energy of solvation -84.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds